net.sourceforge.cilib.bioinf.rnaprediction
Class RNAPSO

java.lang.Object
  net.sourceforge.cilib.algorithm.Algorithm
      net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
          net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
              net.sourceforge.cilib.pso.PSO
                  net.sourceforge.cilib.bioinf.rnaprediction.RNAPSO

All Implemented Interfaces:

Serializable, Runnable, ParticipatingAlgorithm, Cloneable

public class RNAPSO
extends PSO

Author:

marais

See Also:

Serialized Form

Field Summary

Fields inherited from class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm

initialisationStrategy

Fields inherited from class net.sourceforge.cilib.algorithm.Algorithm

optimisationProblem

Constructor Summary

RNAPSO()
Create an instance of the RNAPSO.

Method Summary

void	performInitialisation() Perform the required initialisation for the algorithm.

Methods inherited from class net.sourceforge.cilib.pso.PSO

algorithmIteration, getBestSolution, getClone, getContribution, getContributionFitness, getIterationStrategy, getSolutions, getTopology, reset, setIterationStrategy, setTopology, updateContributionFitness

Methods inherited from class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm

accept, getInitialisationStrategy, setInitialisationStrategy

Methods inherited from class net.sourceforge.cilib.algorithm.Algorithm

addAlgorithmListener, addStoppingCondition, get, getAlgorithmList, getIterations, getOptimisationProblem, getPercentageComplete, getStoppingConditions, initialise, isFinished, performIteration, performUninitialisation, removeAlgorithmListener, removeStoppingCondition, run, setOptimisationProblem, terminate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RNAPSO

public RNAPSO()

Create an instance of the RNAPSO.

Method Detail

performInitialisation

public void performInitialisation()

Perform the required initialisation for the algorithm. Create the particles and add then to the specified topology.

Overrides:

performInitialisation in class PSO