Hierarchy For Package net.sourceforge.cilib.bioinf.rnaprediction

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • net.sourceforge.cilib.entity.AbstractEntity (implements net.sourceforge.cilib.entity.CandidateSolution, net.sourceforge.cilib.entity.Entity)
    • net.sourceforge.cilib.pso.particle.AbstractParticle (implements net.sourceforge.cilib.entity.Particle)
      • net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
  • net.sourceforge.cilib.algorithm.Algorithm (implements net.sourceforge.cilib.util.Cloneable, java.lang.Runnable)
    • net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
      • net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
        • net.sourceforge.cilib.pso.PSO (implements net.sourceforge.cilib.cooperative.ParticipatingAlgorithm)
          • net.sourceforge.cilib.bioinf.rnaprediction.RNAPSO
  • net.sourceforge.cilib.measurement.single.Fitness (implements net.sourceforge.cilib.measurement.Measurement)
    • net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.Efn2RNAFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.HydrogenBondFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.MethewsFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.SimpleRNAFitness
      • net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness
  • net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair (implements java.lang.Comparable<T>)
  • net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
  • net.sourceforge.cilib.problem.OptimisationProblemAdapter (implements net.sourceforge.cilib.problem.OptimisationProblem)
    • net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAAccuracyMeasurement (implements net.sourceforge.cilib.measurement.Measurement)
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAFolder
    • net.sourceforge.cilib.bioinf.rnaprediction.GreedyRNAFolder
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAInitialiser
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAStem (implements java.util.Collection<E>, java.lang.Comparable<T>, net.sourceforge.cilib.type.types.Type)
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement (implements net.sourceforge.cilib.measurement.Measurement)
  • net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate (implements net.sourceforge.cilib.pso.velocityupdatestrategies.VelocityUpdateStrategy)
  • net.sourceforge.cilib.type.types.container.Set<E> (implements net.sourceforge.cilib.type.types.container.StructuredType<E>)
    • net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
  • net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
  • net.sourceforge.cilib.bioinf.rnaprediction.StemConstraintChecker
  • net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator
  • net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
  • net.sourceforge.cilib.bioinf.rnaprediction.TestStemGenerator