A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

ABC - Class in net.sourceforge.cilib.boa
An implementation of the Artificial Bee Colony Algorithm.
ABC() - Constructor for class net.sourceforge.cilib.boa.ABC
Default constructor.
ABC(ABC) - Constructor for class net.sourceforge.cilib.boa.ABC
Copy constructor.
AbsoluteDistanceMeasure - Class in net.sourceforge.cilib.util
Deprecated. Make use of Manhattan Distance. It is the correct name.
AbsoluteDistanceMeasure() - Constructor for class net.sourceforge.cilib.util.AbsoluteDistanceMeasure
Deprecated.  
AbsoluteValue - Class in net.sourceforge.cilib.functions.continuous.unconstrained
The Absolute Value Function.
AbsoluteValue() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.AbsoluteValue
Create an instance of AbsoluteValue.
AbstractBee - Class in net.sourceforge.cilib.boa.bee
The entity class for the ABC algorithm that represents the bees.
AbstractBee() - Constructor for class net.sourceforge.cilib.boa.bee.AbstractBee
Default constructor.
AbstractBee(AbstractBee) - Constructor for class net.sourceforge.cilib.boa.bee.AbstractBee
Copy constructor.
AbstractEntity - Class in net.sourceforge.cilib.entity
Abstract class definition for all concrete Entity objects.
AbstractEntity() - Constructor for class net.sourceforge.cilib.entity.AbstractEntity
Initialise the candidate solution of the Entity.
AbstractEntity(AbstractEntity) - Constructor for class net.sourceforge.cilib.entity.AbstractEntity
Copy constructor.
AbstractGameResult - Class in net.sourceforge.cilib.games.result
 
AbstractGameResult() - Constructor for class net.sourceforge.cilib.games.result.AbstractGameResult
 
AbstractIterationStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.algorithm.population
Generic IterationStrategy class for all population based algorithms.
AbstractIterationStrategy() - Constructor for class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Create an instance of the IterationStrategy.
AbstractList<E extends Type> - Class in net.sourceforge.cilib.type.types.container
The basic definition for all Type objects that are based on a list.
AbstractList() - Constructor for class net.sourceforge.cilib.type.types.container.AbstractList
 
AbstractParticle - Class in net.sourceforge.cilib.pso.particle
This class defines the common behaviour available for all Particle instances.
AbstractParticle() - Constructor for class net.sourceforge.cilib.pso.particle.AbstractParticle
Default constructor for all Particles.
AbstractParticle(AbstractParticle) - Constructor for class net.sourceforge.cilib.pso.particle.AbstractParticle
Copy constructor.
AbstractShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents a Shape in tetris.
AbstractShape() - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
 
AbstractShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
AbstractTopology<E extends Entity> - Class in net.sourceforge.cilib.entity
This an abstract class which extends from the abstract Topology class.
AbstractTopology() - Constructor for class net.sourceforge.cilib.entity.AbstractTopology
 
AbstractTree<E extends Cloneable & Comparable<? super E>> - Class in net.sourceforge.cilib.type.types.container
Base class for all Tree objects.
AbstractTree() - Constructor for class net.sourceforge.cilib.type.types.container.AbstractTree
 
AbstractTree.TreeIterator - Class in net.sourceforge.cilib.type.types.container
Provides a simple Iterator for trees.
AbstractTree.TreeIterator() - Constructor for class net.sourceforge.cilib.type.types.container.AbstractTree.TreeIterator
Create a AbstractTree.TreeIterator instance.
accept(TopologyVisitor) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
General method to accept a visitor to perform a calculation on the current algorithm.
accept(TopologyVisitor) - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
General method to accept a visitor to perform a calculation on the current algorithm.
accept(TopologyVisitor) - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
General method to accept a visitor to perform a calculation on the current algorithm.
accept(Visitor<E>) - Method in class net.sourceforge.cilib.entity.AbstractTopology
Accept a vistitor and perform the visitor actions on this Topology.
accept(TopologyVisitor) - Method in class net.sourceforge.cilib.entity.AbstractTopology
Accept a TopologyVisitor into the Topology to perform the actions defined within the TopologyVisitor.
accept(Visitor<E>) - Method in interface net.sourceforge.cilib.entity.Topology
Accept a vistitor and perform the visitor actions on this Topology.
accept(TopologyVisitor) - Method in interface net.sourceforge.cilib.entity.Topology
Accept a TopologyVisitor into the Topology to perform the actions defined within the TopologyVisitor.
accept(ProblemVisitor) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
accept(ProblemVisitor) - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
 
accept(ProblemVisitor) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
accept(ProblemVisitor) - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Accept the provided Visitor and perform the Visitor.visit(Object) method.
accept(ProblemVisitor) - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Accept the provided Visitor and perform the Visitor.visit(Object) method.
accept(Visitor<E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Accept the Visitor instance and perform the actions within the Visitor on the objects contained within this Structure.
accept(Visitor<E>) - Method in class net.sourceforge.cilib.type.types.container.Set
Not supported for this container.
accept(Visitor<E>) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Accept the Visitor instance and perform the actions within the Visitor on the objects contained within this Structure.
accept(Visitor<E>) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Accept the Visitor instance and perform the actions within the Visitor on the objects contained within this Structure.
accept(Visitor<Type>) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Accept the Visitor instance and perform the actions within the Visitor on the objects contained within this Structure.
accept(Visitor<Numeric>) - Method in class net.sourceforge.cilib.type.types.container.Vector
Apply the visitor to all elements contained in this Vector.
acceptVisitor(GenericTopologyVisitor) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
Ackley - Class in net.sourceforge.cilib.functions.continuous.unconstrained
The Generalized Ackley.
Ackley() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Ackley
 
ActivationFunction - Class in net.sourceforge.cilib.functions.activation
Activation functions are functions that are typically used within Neurons.
ActivationFunction() - Constructor for class net.sourceforge.cilib.functions.activation.ActivationFunction
 
activationFunction - Variable in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
 
activeLearningUpdate(Object) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
activeLearningUpdate(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
activeLearningUpdate(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Update the active learning, based on the provided input.
activeLearningUpdate(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
add(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
add(E) - Method in class net.sourceforge.cilib.container.SortedList
Add the provided element to the list.
add(int, E) - Method in class net.sourceforge.cilib.container.SortedList
Add element to the list at index index.
add(E) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Inserts the specified element into the list.
add(E) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Inserts the specified element into the list.
add(Operator) - Method in class net.sourceforge.cilib.entity.operators.CompositeOperator
Add an operator to the composite.
add(Entity) - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
add(Entity, boolean) - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
Add the current provided entity to either the modifiable and unmodifiable lists, maintained within this holder.
add(E) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
add(int, E) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
add(Entity) - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
Add a child to the holder?
add(Entity, boolean) - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
 
add(E) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Adds an entity to the topology.
add(int, E) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
add(E) - Method in interface net.sourceforge.cilib.entity.Topology
Adds an entity to the topology.
add(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
Adds the candidateSolution if no solution within the archive dominates it.
add(int, OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
add(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
add(int, OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
add(OptimisationProblem) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
add(int, OptimisationProblem) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
add(E) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Convenience method.
add(E) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Add the given element to the current Structure.
add(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Add the given element to the current Structure.
add(E) - Method in class net.sourceforge.cilib.type.types.container.Set
Add the given element to the current Structure.
add(E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Add the given element to the current Structure.
add(E) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Add the given element to the current Structure.
add(Type) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Add the given element to the current Structure.
add(Numeric) - Method in class net.sourceforge.cilib.type.types.container.Vector
Add the element to the end of the current Vector.
add_escapes(String) - Method in exception net.sourceforge.cilib.type.parser.ParseException
Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addAlgorithmListener(AlgorithmListener) - Method in class net.sourceforge.cilib.algorithm.Algorithm
Adds an algorithm event listener.
addAll(Collection<? extends NucleotidePair>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
addAll(Collection<? extends E>) - Method in class net.sourceforge.cilib.container.SortedList
addAll(int, Collection<? extends E>) - Method in class net.sourceforge.cilib.container.SortedList
Insert the proveded collection to the list at index.
addAll(List<Entity>) - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
addAll(Collection<? extends E>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
addAll(int, Collection<? extends E>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
addAll(List<Entity>) - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
plural version of add()
addAll(Collection<? extends E>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
addAll(int, Collection<? extends E>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
addAll(Collection<? extends OptimisationSolution>) - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
Iterates through the collection of candidateSolutions and adds the non-dominated solutions to the archive.
addAll(int, Collection<? extends OptimisationSolution>) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
addAll(Collection<? extends OptimisationSolution>) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
addAll(int, Collection<? extends OptimisationSolution>) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
addAll(Collection<? extends OptimisationProblem>) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
addAll(int, Collection<? extends OptimisationProblem>) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
addAll(StructuredType<? extends E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Add add the objects of type E, within structureto the current Structure.
addAll(StructuredType<? extends E>) - Method in class net.sourceforge.cilib.type.types.container.Set
Add add the objects of type E, within structureto the current Structure.
addAll(StructuredType<? extends E>) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Add add the objects of type E, within structureto the current Structure.
addAll(StructuredType<? extends E>) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Add add the objects of type E, within structureto the current Structure.
addAll(StructuredType<? extends Type>) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Add add the objects of type E, within structureto the current Structure.
addAll(StructuredType<? extends Numeric>) - Method in class net.sourceforge.cilib.type.types.container.Vector
Add all the elements from the provided structure to the current Vector.
addCompetitor(Competitor) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Add a competitor to the list of population competitors.
addCompetitor(Competitor) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Add a Competitor to this list
addCompetitorList(PopulationCompetitorList) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Add a PopulationCompetitorList to this CoevolutionCompetitorList
addCompetitorList(int, List<Competitor>) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Add a list of Competitor's to specific PopulationCompetitorList
addCompetitors(List<Competitor>) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Add a List of Competitor's to this list
addDataSet(DataSet) - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
This method overrides DataSetBuilder.addDataSet(DataSet) because it works completely different than a normal DataSetBuilder.
addDataSet(DataSet) - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
addEdge(E, E) - Method in interface net.sourceforge.cilib.type.types.container.Graph
Create an edge / link between the given two vertices.
addEdge(E, E, double) - Method in interface net.sourceforge.cilib.type.types.container.Graph
Create an edge / link between the given two vertices.
addEdge(E, E, double, double) - Method in interface net.sourceforge.cilib.type.types.container.Graph
Create an edge / link between the given two vertices.
addEdge(E, E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Add a connecting edge between the provided two distinct vertexes.
addEdge(E, E, double) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Add a connecting edge between the provided two distinct vertexes, given the provided cost for the connection.
addEdge(E, E, double, double) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Add a connecting edge between the provided two distinct vertexes, given the provided cost and weight for the connection.
addEscapes(String) - Static method in error net.sourceforge.cilib.type.parser.TokenMgrError
Replaces unprintable characters by their escaped (or unicode escaped) equivalents in the given string
addGameItem(GameItem) - Method in class net.sourceforge.cilib.games.states.ListGameState
Add an item to the game state at the end of the list.
AdditionMutationOperatorStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
TODO: Complete this javadoc
AdditionMutationOperatorStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.AdditionMutationOperatorStrategy
 
addLayer(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
Used to add the array of layer sizes in XML
addLayer(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.InputOutputGenericTopologyBuilder
Used to add the array of layer sizes in XML
addMeasurement(AgentMeasure) - Method in class net.sourceforge.cilib.games.game.Game
Add a new AgentMeasure to the list of measurements
addMeasurement(Measurement) - Method in class net.sourceforge.cilib.measurement.multiple.CompositeMeasurement
Add a measurement to the composite for evaluation on the sub-algorithms.
addMeasurement(Measurement) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.postSimulation.PostMeasurementSuite
 
addMeasurement(Measurement) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Adds a measurement to the suite.
addMoveDown() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
addNonDominatedSolution(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
 
addObserver(Observer) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
addPoolSelectionStrategy(OpponentPoolSelectionStrategy) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
addPopulationBasedAlgorithm(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Add a PopulationBasedAlgorithm to the list of maintained sub-populations.
addPopulationBasedAlgorithm(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
addProgressListener(ProgressListener) - Method in class net.sourceforge.cilib.simulator.Simulation
Adds a listener for progress events.
addPrototypError(NNError) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
addRestartCondition(StoppingCondition) - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Add a stopping condition used to determine when the algorithm should be restarted.
addSelection(SelectionStrategy) - Method in class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
 
addSolution(double[]) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This method will add a solution to the vectorSolutions.
addSplitIndex(int) - Method in class net.sourceforge.cilib.cooperative.splitstrategies.IndexedSplitStrategy
 
addStoppingCondition(StoppingCondition) - Method in class net.sourceforge.cilib.algorithm.Algorithm
Adds a stopping condition.
addSubTree(Tree<E>) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Add the provided subtree to the current Tree.
addSubTree(Tree<E>) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Add a subtree to the current Tree instance.
addSubTree(Tree<E>) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Add a subtree to the current Tree instance.
addSubTree(Tree<E>) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Add a subtree to the current Tree instance.
addToCompetitorPool(CoevolutionCompetitorList, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentPoolSelectionStrategy
Add Competitors to the CoevolutionCompetitorList pool from the sub populations
addToCompetitorPool(CoevolutionCompetitorList, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.coevolution.selection.SelectAllSolutionsPoolSelectionStrategy
Add Competitors to the CoevolutionCompetitorList pool from the sub populations
addToCompetitorPool(CoevolutionCompetitorList, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
Add Competitors to the CoevolutionCompetitorList pool from the sub populations
addToCompetitorPool(CoevolutionCompetitorList, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.coevolution.selection.SelectpBestSolutionsPoolSelectionStrategy
Add Competitors to the CoevolutionCompetitorList pool from the sub populations
addToStructure(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
Adds a non-dominated candidateSolution into the archive.
addToStructure(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
adjustBeginLineColumn(int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
Agent - Class in net.sourceforge.cilib.games.agent
This class represents a game playing agent.
Agent() - Constructor for class net.sourceforge.cilib.games.agent.Agent
 
Agent(Agent) - Constructor for class net.sourceforge.cilib.games.agent.Agent
 
AgentMeasure - Class in net.sourceforge.cilib.games.measurement
 
AgentMeasure() - Constructor for class net.sourceforge.cilib.games.measurement.AgentMeasure
 
AgentMeasure(AgentMeasure) - Constructor for class net.sourceforge.cilib.games.measurement.AgentMeasure
 
agentMeasurement - Variable in class net.sourceforge.cilib.games.game.Game
 
agentScore - Variable in class net.sourceforge.cilib.games.agent.Agent
 
agentToken - Variable in class net.sourceforge.cilib.games.agent.Agent
 
Algorithm - Class in net.sourceforge.cilib.algorithm
All algorithms in CIlib should be subclasses of Algorithm.
Algorithm() - Constructor for class net.sourceforge.cilib.algorithm.Algorithm
Default constructor for Algorithm classes.
Algorithm(Algorithm) - Constructor for class net.sourceforge.cilib.algorithm.Algorithm
Copy constructor.
AlgorithmEvent - Class in net.sourceforge.cilib.algorithm
This is the event raised by algorithms after iterations and completion.
AlgorithmEvent(Algorithm) - Constructor for class net.sourceforge.cilib.algorithm.AlgorithmEvent
Creates a new instance of AlgorithmEvent with a given source algorithm.
AlgorithmFactory - Interface in net.sourceforge.cilib.algorithm
A factory used to produce an Algorithm must satisfy this interface.
algorithmFinished(AlgorithmEvent) - Method in interface net.sourceforge.cilib.algorithm.AlgorithmListener
This event is fired when the algorithm has completed normally.
algorithmFinished(AlgorithmEvent) - Method in class net.sourceforge.cilib.measurement.generic.Time
This event is fired when the algorithm has completed normally.
algorithmFinished(AlgorithmEvent) - Method in class net.sourceforge.cilib.simulator.Simulation
 
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.Algorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Perform an algorithm iteration, then restart the Algorithm and increment the number of restarts.
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Perform the iteration within the algorithm.
algorithmIteration() - Method in class net.sourceforge.cilib.algorithm.SingularAlgorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.boa.ABC
Perform the iteration within the algorithm.
algorithmIteration() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Performs a single iteration of the KMeans algorithm.
algorithmIteration() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
algorithmIteration() - Method in class net.sourceforge.cilib.ec.EC
Perform the iteration within the algorithm.
algorithmIteration() - Method in class net.sourceforge.cilib.hs.HS
The actual operations that the current Algorithm performs within a single iteration.
algorithmIteration() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
algorithmIteration() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
algorithmIteration() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
algorithmIteration() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
algorithmIteration() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
algorithmIteration() - Method in class net.sourceforge.cilib.pso.PSO
Perform the iteration of the PSO algorithm, use the appropriate IterationStrategy to perform the iteration.
algorithmIterator - Variable in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
 
AlgorithmIterator<E> - Interface in net.sourceforge.cilib.cooperative.algorithmiterators
TODO: Complete this Javadoc.
AlgorithmListener - Interface in net.sourceforge.cilib.algorithm
Any class can implement this interface to be notified about algorithm events.
algorithms - Variable in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
 
AlgorithmStack - Class in net.sourceforge.cilib.algorithm
Maintain the currently running algorithm stack.
AlgorithmStack() - Constructor for class net.sourceforge.cilib.algorithm.AlgorithmStack
Create a new AlgorithmStack instance.
algorithmStarted(AlgorithmEvent) - Method in interface net.sourceforge.cilib.algorithm.AlgorithmListener
This event is fired just prior to the execution of the main loop of the algorithm.
algorithmStarted(AlgorithmEvent) - Method in class net.sourceforge.cilib.measurement.generic.Time
This event is fired just prior to the execution of the main loop of the algorithm.
algorithmStarted(AlgorithmEvent) - Method in class net.sourceforge.cilib.simulator.Simulation
 
algorithmTerminated(AlgorithmEvent) - Method in interface net.sourceforge.cilib.algorithm.AlgorithmListener
This event is fired when the algorithm is terminated abnormally.
algorithmTerminated(AlgorithmEvent) - Method in class net.sourceforge.cilib.measurement.generic.Time
This event is fired when the algorithm is terminated abnormally.
algorithmTerminated(AlgorithmEvent) - Method in class net.sourceforge.cilib.simulator.Simulation
 
AlignmentCreator - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class is responsible for creating an output alignment by populating the input alignment with gaps at positions given by the discretization of the particles positions.
AlignmentCreator() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
AlignmentVisualizer - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class serves as a measurement, its puspose is to display the output alignment.
AlignmentVisualizer() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer
 
alpha - Variable in class net.sourceforge.cilib.util.MinkowskiMetric
 
amountInputs() - Method in class net.sourceforge.cilib.games.agent.neural.NeuralStateInputStrategy
get the amount of inputs that the Neural Network should have based on this input strategy
amountInputs() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyNeuralInputStrategy
This NeuralStateInputStrategy requires 4 input units.
amountInputs() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
get the amount of inputs that the Neural Network should have based on this input strategy
amountInputs() - Method in class net.sourceforge.cilib.games.game.tictactoe.TTTStateInputStrategy
get the amount of inputs that the Neural Network should have based on this input strategy
AngleModulation - Class in net.sourceforge.cilib.functions.continuous.decorators
A Decorator pattern class to wrap a normal function to perform Angle Modulation.
AngleModulation() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
AngleModulation(AngleModulation) - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
AntiClusterWeighing - Class in net.sourceforge.cilib.moo.archive.solutionweighing
An implementation of SolutionWeighing that weighs a collection of OptimisationSolutions based on how closely clustered these solutions are to one another.
AntiClusterWeighing() - Constructor for class net.sourceforge.cilib.moo.archive.solutionweighing.AntiClusterWeighing
 
AntiClusterWeighing(AntiClusterWeighing) - Constructor for class net.sourceforge.cilib.moo.archive.solutionweighing.AntiClusterWeighing
 
append(Type) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
append(Entity) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
append(E) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Add the provided Type to the end of the current list.
append(AbstractList<E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Add the provided AbstractList to the end of the current list.
append(AbstractList<T>, AbstractList<T>) - Static method in class net.sourceforge.cilib.type.types.container.AbstractList
Create a new (cloned) Vector consisting of rhs that has been appended to lhs.
append(AbstractList<Type>) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Add the provided AbstractList to the end of the current list.
append(AbstractList<Numeric>) - Method in class net.sourceforge.cilib.type.types.container.Vector
Add the elements of list to the end of the current Vector.
applyOutputToState(TypeList, Agent, Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.neural.NeuralOutputInterpretationStrategy
Modify the game by the output vector
applyOutputToState(TypeList, Agent, Game) - Method in class net.sourceforge.cilib.games.game.predatorprey.NeuralPredatorOutputStrategy
Modify the game by the output vector
applyOutputToState(TypeList, Agent, Game) - Method in class net.sourceforge.cilib.games.game.predatorprey.NeuralPreyOutputStrategy
Modify the game by the output vector
Archive - Class in net.sourceforge.cilib.moo.archive
A representation of an archive of non-dominated solutions used by Multi-objective optimisation algorithms for solution storage during a search.
Archive() - Constructor for class net.sourceforge.cilib.moo.archive.Archive
 
ArchiveReevaluationResponseStrategy - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
 
ArchiveReevaluationResponseStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ArchiveReevaluationResponseStrategy
 
ArchivingIterationStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.moo.iterationstrategies
A generic multi-objective IterationStrategy class that wraps another IterationStrategy and is responsible for populating the Archive of Pareto optimal solutions after the execution of the inner IterationStrategy class.
ArchivingIterationStrategy() - Constructor for class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
ArchivingIterationStrategy(ArchivingIterationStrategy<E>) - Constructor for class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
AreaUnderROC - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Fill in some javadoc.
AreaUnderROC() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
AreaUnderROC(AreaUnderROC) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
arrangeClustersAndCentroids(Vector) - Method in class net.sourceforge.cilib.util.ClusteringUtils
The three methods called in this method must be called in that specific order, i.e.
arrangedCentroids - Variable in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
arrangedClusters - Variable in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
Array - Interface in net.sourceforge.cilib.container
Very basic array abstraction.
AscendingFitnessComparator<E extends Entity> - Class in net.sourceforge.cilib.entity.comparator
Comparator to order Entity instances based on fitness values.
AscendingFitnessComparator() - Constructor for class net.sourceforge.cilib.entity.comparator.AscendingFitnessComparator
 
asList() - Method in class net.sourceforge.cilib.algorithm.AlgorithmStack
Return an unmodifiable list of Algorithm instances.
asList() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
asList() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Get all the entities within the topology.
asList() - Method in interface net.sourceforge.cilib.entity.Topology
Get all the entities within the topology.
assignObjectives(MOOptimisationProblem, List<PopulationBasedAlgorithm>) - Method in interface net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.ObjectiveAssignmentStrategy
 
assignObjectives(MOOptimisationProblem, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.RandomObjectiveAssignmentStrategy
 
assignObjectives(MOOptimisationProblem, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.SequentialObjectiveAssignmentStrategy
 
assignPlayerScore(int, Fitness) - Method in class net.sourceforge.cilib.games.game.Game
Assign a score to a player
assignPlayerScores(Game) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGameScoringStrategy
Assign a Fitness to each Agent after the completion of a Game
assignPlayerScores(Game) - Method in class net.sourceforge.cilib.games.game.scoring.GameScoringStrategy
Assign a Fitness to each Agent after the completion of a Game
assignPlayerScores(Game) - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
Assign a Fitness to each Agent after the completion of a Game
assignPlayerScores(Game) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisScoringStrategy
Assign a Fitness to each Agent after the completion of a Game
AssociatedPairDataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
This class "collects" and holds all the patterns of the DataSets specified through the AssociatedPairDataSetBuilder.addDataSet(DataSet) method.
AssociatedPairDataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Initialise the patterns data structure and set the identifier to be blank.
AssociatedPairDataSetBuilder(AssociatedPairDataSetBuilder) - Constructor for class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
 
ASTdimension - Class in net.sourceforge.cilib.type.parser
 
ASTdimension(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTdimension
 
ASTdimension(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTdimension
 
ASTdomainElement - Class in net.sourceforge.cilib.type.parser
 
ASTdomainElement(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTdomainElement
 
ASTdomainElement(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTdomainElement
 
ASTelement - Class in net.sourceforge.cilib.type.parser
 
ASTelement(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTelement
 
ASTelement(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTelement
 
ASTexponent - Class in net.sourceforge.cilib.type.parser
 
ASTexponent(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTexponent
 
ASTexponent(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTexponent
 
ASTlowerDim - Class in net.sourceforge.cilib.type.parser
 
ASTlowerDim(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTlowerDim
 
ASTlowerDim(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTlowerDim
 
ASTnumber - Class in net.sourceforge.cilib.type.parser
 
ASTnumber(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTnumber
 
ASTnumber(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTnumber
 
ASTrepeat - Class in net.sourceforge.cilib.type.parser
 
ASTrepeat(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTrepeat
 
ASTrepeat(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTrepeat
 
ASTrootElement - Class in net.sourceforge.cilib.type.parser
 
ASTrootElement(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTrootElement
 
ASTrootElement(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTrootElement
 
ASTtype - Class in net.sourceforge.cilib.type.parser
 
ASTtype(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTtype
 
ASTtype(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTtype
 
ASTupperDim - Class in net.sourceforge.cilib.type.parser
 
ASTupperDim(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTupperDim
 
ASTupperDim(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTupperDim
 
ASTvalue - Class in net.sourceforge.cilib.type.parser
 
ASTvalue(int) - Constructor for class net.sourceforge.cilib.type.parser.ASTvalue
 
ASTvalue(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.ASTvalue
 
ASynchronousIterationStrategy - Class in net.sourceforge.cilib.pso.iterationstrategies
Implementation of the asynchrounous iteration strategy for PSO.
ASynchronousIterationStrategy() - Constructor for class net.sourceforge.cilib.pso.iterationstrategies.ASynchronousIterationStrategy
 
AveFitnessCalculationStrategy - Class in net.sourceforge.cilib.coevolution.score.fitnesscalculation
This Fitness calulation strategy simply gets the average score attained regardless of win/lose or draw as the Fitness value.
AveFitnessCalculationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.AveFitnessCalculationStrategy
 
AveFitnessCalculationStrategy(FitnessCalculationStrategy) - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.AveFitnessCalculationStrategy
 
AverageDiversityAroundAllEntities - Class in net.sourceforge.cilib.measurement.single.diversity
 
AverageDiversityAroundAllEntities() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.AverageDiversityAroundAllEntities
 
AverageItemDistanceMeasure - Class in net.sourceforge.cilib.games.measurement
 
AverageItemDistanceMeasure() - Constructor for class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
AverageItemDistanceMeasure(AverageItemDistanceMeasure) - Constructor for class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
AveTetrisFeaturesMeasure - Class in net.sourceforge.cilib.games.game.tetris
 
AveTetrisFeaturesMeasure() - Constructor for class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
 
AveTetrisFeaturesMeasure(AveTetrisFeaturesMeasure) - Constructor for class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
Copy constructor

B

B - Class in net.sourceforge.cilib.type.creator
 
B() - Constructor for class net.sourceforge.cilib.type.creator.B
 
backup(int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Backup a number of characters.
BareBonesDEVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
The VelocityUpdateStrategy strategy which uses a DE strategy where the trial vector is the bare bones attractor point.
BareBonesDEVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Create a new instance of the BareBonesDEVelocityUpdate.
BareBonesDEVelocityUpdate(BareBonesDEVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Copy constructor.
BareBonesExploitVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
The VelocityUpdateStrategy strategy for the Bare Bones PSO as adapted by Kennedy.
BareBonesExploitVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesExploitVelocityUpdateStrategy
 
BareBonesExploitVelocityUpdateStrategy(BareBonesExploitVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesExploitVelocityUpdateStrategy
 
BareBonesPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
Deprecated. Refer to the replacing class.
BareBonesPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.BareBonesPositionUpdateStrategy
Deprecated. Default construstor.
BareBonesPositionUpdateStrategy(BareBonesPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.BareBonesPositionUpdateStrategy
Deprecated. Copy Constructor for the BareBonesPositionUpdateStrategy.
BareBonesVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
The VelocityUpdateStrategy strategy for the Bare Bones PSO as defined by Kennedy.
BareBonesVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
BareBonesVelocityUpdateStrategy(BareBonesVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
BatchTrainingSetEpochStrategy - Class in net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy
 
BatchTrainingSetEpochStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.BatchTrainingSetEpochStrategy
 
Beale - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Beale Function.
Beale() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Beale
Create an instance of Beale.
BeePositionUpdateStrategy - Interface in net.sourceforge.cilib.boa.positionupdatestrategies
Interface for a bee position update strategy.
beginColumn - Variable in class net.sourceforge.cilib.type.parser.Token
The column number of the first character of this Token.
beginIndex - Variable in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
beginLine - Variable in class net.sourceforge.cilib.type.parser.Token
The line number of the first character of this Token.
BeginToken() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Start.
BestMatch - Class in net.sourceforge.cilib.bioinf.sequencealignment
A scoring function based on the highest number of matches per column.
BestMatch() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.BestMatch
 
BestParticlePosition - Class in net.sourceforge.cilib.measurement.single
Print the position of the best particle in the swarm.
BestParticlePosition() - Constructor for class net.sourceforge.cilib.measurement.single.BestParticlePosition
Create a nw instance of BestParticlePosition.
BestParticlePosition(BestParticlePosition) - Constructor for class net.sourceforge.cilib.measurement.single.BestParticlePosition
Copy the provided instance.
BestPositionBoundViolations - Class in net.sourceforge.cilib.measurement.single
Checks of the best position in the current population violates boundary constraints.
BestPositionBoundViolations() - Constructor for class net.sourceforge.cilib.measurement.single.BestPositionBoundViolations
Creates a new instance of BestPositionBoundViolations.
BestPositionBoundViolations(BestPositionBoundViolations) - Constructor for class net.sourceforge.cilib.measurement.single.BestPositionBoundViolations
Copy constructor.
betweenClusterSeperationCache - Variable in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
bf - Variable in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
BiasNeuronConfig - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
TODO: Complete this javadoc.
BiasNeuronConfig() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
BiasNeuronConfig(int, Type, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
BiasNeuronConfig(NeuronConfig[], Weight[], boolean[], int, Weight, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
BinaryAdapter - Class in net.sourceforge.cilib.functions.discrete
Class to convert a binary vector into a continuous vector for optimisation of continous problems by a binary optimiser.
BinaryAdapter() - Constructor for class net.sourceforge.cilib.functions.discrete.BinaryAdapter
Constructor.
BinaryAlignmentCreator - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class is responsible for creating an output alignment by populating the input alignment with gaps at positions given by the discretization of the particles positions.
BinaryAlignmentCreator() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
BinaryDataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
TODO: COmplete this javadoc.
BinaryDataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.BinaryDataSetBuilder
 
BinaryMSAProblem - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class represents the Optimization Problem to be solved for the MSA (Binary representation).
BinaryMSAProblem() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Create an instance of the class.
BinaryPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
Binary position update strategy to enable the BinaryPSO.
BinaryPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
Create an instance of BinaryPositionUpdateStrategy.
BinaryPositionUpdateStrategy(BinaryPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
Create a copy of the provided instance.
BinaryTree<E extends Comparable<? super E> & Cloneable> - Class in net.sourceforge.cilib.type.types.container
Implementation of a BinaryTree.
BinaryTree() - Constructor for class net.sourceforge.cilib.type.types.container.BinaryTree
Create a new instance of BinaryTree.
BinaryTree(E) - Constructor for class net.sourceforge.cilib.type.types.container.BinaryTree
Create a new instance of BinaryTree with the provided parameter as the value of the key.
BinaryTree(E, BinaryTree<E>, BinaryTree<E>) - Constructor for class net.sourceforge.cilib.type.types.container.BinaryTree
Create an instance of BinaryTree with the provided tree instances as the left and right children, maintaining the provided key value.
BinaryTree(BinaryTree<E>) - Constructor for class net.sourceforge.cilib.type.types.container.BinaryTree
Copy constructor.
Bird - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bird Function
Bird() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bird
 
Bit - Class in net.sourceforge.cilib.type.types
Implemetantation of the Bit object.
Bit() - Constructor for class net.sourceforge.cilib.type.types.Bit
Create a Bit object with a random state value.
Bit(boolean) - Constructor for class net.sourceforge.cilib.type.types.Bit
Copy-constructor.
Bit(Bit) - Constructor for class net.sourceforge.cilib.type.types.Bit
Copy constructor.
BitArray - Class in net.sourceforge.cilib.container
This class represents an array of bit values and is efficient as the values are packed together.
BitArray() - Constructor for class net.sourceforge.cilib.container.BitArray
Create a BitArray with the initial number of bits equal to 32.
BitArray(int) - Constructor for class net.sourceforge.cilib.container.BitArray
Create a BitArray with the initial number of bits specified by the parameter numberOfBits.
BitArray(BitArray) - Constructor for class net.sourceforge.cilib.container.BitArray
Copy constructor.
BitStringMatcher - Class in net.sourceforge.cilib.functions.discrete
Discrete function to match the given bit string or a randomly generated bit string.
BitStringMatcher() - Constructor for class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Constructor.
Blackboard<K,V extends Type> - Class in net.sourceforge.cilib.type.types
Simple Blackboard implementation.
Blackboard() - Constructor for class net.sourceforge.cilib.type.types.Blackboard
Create a new empty Blackboard container.
Blackboard(Blackboard<K, V>) - Constructor for class net.sourceforge.cilib.type.types.Blackboard
Copy constructor.
BlendCrossoverStrategy - Class in net.sourceforge.cilib.entity.operators.crossover
Implementation of the blend cross-over strategy.
BlendCrossoverStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
BlendCrossoverStrategy(BlendCrossoverStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
BLOSUM62SoP - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class implements the Sum Of Pairs scoring function that uses the BLOSUM62 substitutions matrices that give scores for proteins in a biologically meaningful manner.
BLOSUM62SoP() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.BLOSUM62SoP
 
Bohachevsky1 - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bohachevsky 1
Bohachevsky1() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky1
Creates a new instance of Bohachevsky1.
Bohachevsky2 - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bohachevsky 2.
Bohachevsky2() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky2
Creates a new instance of Bohachevsky2.
Bohachevsky3 - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bohachevsky 3.
Bohachevsky3() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky3
Creates a new instance of Bohachevsky2.
Booth - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Booth Function
Booth() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Booth
Create an instance of the Booth function.
BouncingBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
Instead of making use of reactive boundary constraints that reinitialise an entire Particle (or components thereof), this class is a proactive approach to prevent the Particle from moving outside of the domain.
BouncingBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.BouncingBoundaryConstraint
 
boundaryConstraint - Variable in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
 
BoundaryConstraint - Interface in net.sourceforge.cilib.problem.boundaryconstraint
Enforce predefined boundary constraints on Entity instances that are operating in the current search space.
BoundedControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter instance that is defined to operate within a specific range of values.
BoundedControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Create an instance of the BoundedControlParameter.
BoundedControlParameter(BoundedControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Create a copy of the provided instance.
BoundedPersonalBestUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
Update the personal best of the particle, if it is a valid update.
BoundedPersonalBestUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.BoundedPersonalBestUpdateStrategy
 
BoundedType - Interface in net.sourceforge.cilib.type.types
Interface to define bounds.
Bounds - Class in net.sourceforge.cilib.type.types
 
Bounds() - Constructor for class net.sourceforge.cilib.type.types.Bounds
 
Bounds(double, double) - Constructor for class net.sourceforge.cilib.type.types.Bounds
 
BoundsFactory - Class in net.sourceforge.cilib.type.types
This class represents the bounds information for all Numeric types in CIlib.
BoundsFactory() - Constructor for class net.sourceforge.cilib.type.types.BoundsFactory
 
BoxShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the Box shape
BoxShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.BoxShape
 
BoxShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.BoxShape
 
Branin - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Booth Function
Branin() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Branin
Create a new instance of Branin.
breadthFirstTraversal(Visitor<Tree<E>>) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Perform a breadth first traversal of the current Tree node, executing the operation stored within the provided Visitor instance.
breadthFirstTraversal(Visitor<Tree<E>>) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Perform a breadth first traversal of the current Tree node, executing the operation stored within the provided Visitor instance.
bufcolumn - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
buffer - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
bufline - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
bufpos - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
Position in buffer.
Bukin4 - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bukin 4 Function.
Bukin4() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin4
 
Bukin6 - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Bukin 6 Function.
Bukin6() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin6
Create an instance of the function.

C

cacheBetweenClusterSeperation() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
cacheWithinClusterScatter() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
calculateAverageIntraClusterDistance() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the average intra-cluster distance.
calculateAverageSetDistance(int, int) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the average distance between two clusters (sets).
calculateBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DaviesBouldinIndex
The alpha value of the distance measure should correspond to the p value of the Davies-Bouldin Validity Index.
calculateBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex
calculateBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex33
This method implements Equation 22 in the above-mentioned article.
calculateBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex53
This method implements Equation 24 in the above-mentioned article.
calculateBetweenClusterSeperation() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.HalkidiVazirgiannisIndex
Calculate the distances between cluster separation.
calculateBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
calculateClusterDiameter(int) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the diameter of the given cluster, i.e.
calculateDistance(Vector, Vector) - Method in class net.sourceforge.cilib.util.ClusteringUtils
A central point where distances can be calculated.
calculateDistance(int, int) - Method in class net.sourceforge.cilib.util.ClusteringUtils
A central point where the cached distance between the two given patterns can be retrieved.
calculateFitness(Type) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(boolean) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Calculate the fitness of the Entity.
calculateFitness(Type) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
calculateFitness() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Calculate the fitness of the Entity incrementing the number of fitness evaluations for the algorithm.
calculateFitness(boolean) - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Calculate the fitness of the Entity.
calculateFitness() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
calculateFitness(boolean) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
calculateFitness() - Method in class net.sourceforge.cilib.ec.Individual
Calculate the fitness of the Entity incrementing the number of fitness evaluations for the algorithm.
calculateFitness(boolean) - Method in class net.sourceforge.cilib.ec.Individual
Calculate the fitness of the Entity.
calculateFitness() - Method in interface net.sourceforge.cilib.entity.Entity
Calculate the fitness of the Entity incrementing the number of fitness evaluations for the algorithm.
calculateFitness(boolean) - Method in interface net.sourceforge.cilib.entity.Entity
Calculate the fitness of the Entity.
calculateFitness() - Method in class net.sourceforge.cilib.entity.Harmony
Calculate the fitness of the Entity incrementing the number of fitness evaluations for the algorithm.
calculateFitness(boolean) - Method in class net.sourceforge.cilib.entity.Harmony
Calculate the fitness of the Entity.
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.InterClusterDistance
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.IntraClusterDistance
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.KHarmonicMeansFunction
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.NonParametricClusteringFunction
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.QuantisationErrorFunction
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DaviesBouldinIndex
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.GeneralisedDunnIndex
This is a template method.
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.HalkidiVazirgiannisIndex
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.MaulikBandyopadhyayIndex
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.TuriIndex
 
calculateFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.VeenmanReindersBackerIndex
 
calculateFitness(Type) - Method in class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated. Returns the fitness of a potential solution to this problem.
calculateFitness(Type) - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
We are actually optimising the ClusteringProblem.innerProblem, so use it to calculate the fitness.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
Calculates the fitness of a solution with respect to the modifications to the search space.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
This bases the fitness of the solution on the trainingSet samples.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.FunctionMaximisationProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.FunctionMinimisationProblem
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
Calculates the fitness of the given matrix.
calculateFitness(Type) - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Determine the Fitness of the current Problem instance based on the provided solution.
calculateFitness() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Calculate the fitness of the Entity incrementing the number of fitness evaluations for the algorithm.
calculateFitness(boolean) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Calculate the fitness of the Entity.
calculateFitness() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
calculateFitness() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
 
calculateFitness(boolean) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
calculateFitness(boolean) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Calculate the fitness of the Entity.
calculateFitnessFromScoreBoard(EntityScoreboard, int) - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.AveFitnessCalculationStrategy
Calculate the fitness from the scoreboard
calculateFitnessFromScoreBoard(EntityScoreboard, int) - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.FitnessCalculationStrategy
Calculate the fitness from the scoreboard
calculateFitnessFromScoreBoard(EntityScoreboard, int) - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.PercentageWonFitnessCalculationStrategy
Calculate the fitness from the scoreboard
calculateFitnessFromScoreBoard(EntityScoreboard, int) - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.TotalFitnessCalculationStrategy
Calculate the fitness from the scoreboard
calculateInformativeness(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
calculateIntraClusterDistance() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the intra-cluster distance.
calculateMaximumAverageDistance() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the Maximum Average Distance between the patterns in the dataset and the centers learned so far.
calculateMaximumInterClusterDistance() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the longest distance between two clusters.
calculateMaximumSetDistance(int, int) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the maximum distance between two clusters (sets).
calculateMinimumInterClusterDistance() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the shortest distance between two clusters.
calculateMinimumSetDistance(int, int) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the minimum distance between two clusters (sets).
calculateQuantisationError() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
Calculate the Quantisation Error.
calculateScore(int) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Calculate the score based on the amount of rows cleared
calculateWithinClusterScatter(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DaviesBouldinIndex
 
calculateWithinClusterScatter(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex
calculateWithinClusterScatter(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex33
This method implements Equation 28 in the above-mentioned article.
calculateWithinClusterScatter() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.HalkidiVazirgiannisIndex
The variance of the dataset is calculated using the dataset mean, whereas the variance of a specific cluster is calculated using the specific cluster's center as determined by the ClusterCenterStrategy.
calculateWithinClusterScatter(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
canBind(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
candidateSet - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
CandidateSolution - Interface in net.sourceforge.cilib.entity
Interface to describe the notion of a CandidateSoution.
CandidateSolutionMixin - Class in net.sourceforge.cilib.entity
A CandidateSolution is a potential solution within an optimization.
CandidateSolutionMixin() - Constructor for class net.sourceforge.cilib.entity.CandidateSolutionMixin
Create the Mixin class, providing the reference to the shared Blackboard data structure.
CandidateSolutionMixin(CandidateSolutionMixin) - Constructor for class net.sourceforge.cilib.entity.CandidateSolutionMixin
Instantiate a new instance, based on the provided CandidateSolutionMixin.
CauchyMutationStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
 
CauchyMutationStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
CauchyMutationStrategy(CauchyMutationStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
CenterInitialisationStrategy - Class in net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies
 
CenterInitialisationStrategy() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.CenterInitialisationStrategy
 
CentroidsInitialisationStrategy - Interface in net.sourceforge.cilib.clustering.kmeans
This strategy allows for different ways of initializing the centroids of a clustering.
changeEnvironment() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
changeEnvironment() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
changeEnvironment() - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Change the environment.
changeEnvironment() - Method in interface net.sourceforge.cilib.problem.Problem
Change the environment.
changePeaks() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
changePopulationID(int, int) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Change the population ID of this list
ChangeStrategy - Interface in net.sourceforge.cilib.problem.changestrategy
Interface used to determine if change operations should be applied to the current problem.
ChargedParticle - Class in net.sourceforge.cilib.pso.dynamic
Charged Particle used by charged PSO (ChargedVelocityUpdate).
ChargedParticle() - Constructor for class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
ChargedParticle(ChargedParticle) - Constructor for class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
ChargedParticleInitialisationStrategy - Interface in net.sourceforge.cilib.pso.dynamic
Interface for ChargedParticle intialisation.
ChargedVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.dynamic
Velocity update strategy that the so called Charged PSO makes use of.
ChargedVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
ChargedVelocityUpdateStrategy(ChargedVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
ChebyshevDistanceMeasure - Class in net.sourceforge.cilib.util
Chebyshev Distance is a special case of the Minkowski Metric with 'alpha' := infinity.
ChebyshevDistanceMeasure() - Constructor for class net.sourceforge.cilib.util.ChebyshevDistanceMeasure
Create an instance of the ChebyshevDistanceMeasure.
children - Variable in class net.sourceforge.cilib.type.parser.SimpleNode
 
childrenAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
Accept the visitor.
choose(double, double) - Static method in class net.sourceforge.cilib.math.Maths
This is a convienience method providing an alias to combination.
CICLOPS_EXCLUDE_ALGORITHM - Static variable in interface net.sourceforge.cilib.stoppingcondition.StoppingCondition
 
clamp() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Clamp the current paramter vaue between the lower and upper bound values.
clamp(Vector, int) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Clamp to maximum velocity.
clamp(Vector, int) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
TODO: Need to have a VMax strategy.
ClampingBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
Prevent any Entity from over-shooting the problem search space.
ClampingBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.ClampingBoundaryConstraint
 
ClassificationErrorReal - Class in net.sourceforge.cilib.neuralnetwork.generic.errorfunctions
 
ClassificationErrorReal() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
classIndex - Variable in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
clear() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
clear(int, int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
Clears a specific bit (0) in the matrix.
clear() - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
 
clear(int) - Method in class net.sourceforge.cilib.container.BitArray
Clear the bit (make it false) located at a specific index.
clear() - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Clear the current Matrix of it's internal state.
clear() - Method in class net.sourceforge.cilib.container.SortedList
clear() - Method in class net.sourceforge.cilib.entity.operators.CompositeOperator
Clear the composite.
clear() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
clear() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Remove all the entities from the topology.
clear() - Method in interface net.sourceforge.cilib.entity.Topology
Remove all the entities from the topology.
clear() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
clear() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
clear() - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
Removes all solutions from the vectorSolutions.
clear() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
clear() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.Set
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Clear all contained object instances from the current Structure.
clear() - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Clear all contained object instances from the current Structure.
clear() - Method in class net.sourceforge.cilib.type.types.container.Vector
Clear the Vector.
clearAll() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
this method will set all the bits to 0.
clearBestEntity() - Method in class net.sourceforge.cilib.entity.AbstractTopology
Clear the current best entity from the topology, thereby forcing a re-calculation of the best Entity within the topology.
clearBestEntity() - Method in interface net.sourceforge.cilib.entity.Topology
Clear the current best entity from the topology, thereby forcing a re-calculation of the best Entity within the topology.
clearData() - Method in class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
Clear all measured data.
clearData() - Method in class net.sourceforge.cilib.games.measurement.AgentMeasure
Clear all measured data.
clearData() - Method in class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
clearData() - Method in class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
Clear all measured data.
clearFullRows(GameItem[][], int, int) - Static method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Clear all full rows for a given game grid
clearFullRows() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Clear any full rows in the current game grid.
clearMeasurementData() - Method in class net.sourceforge.cilib.games.game.Game
Clear all the measured data while keeping all the AgentMeasure
clearMeasurements() - Method in class net.sourceforge.cilib.games.game.Game
Remove all AgentMeasure objects in the list
clearNodeScope(Node) - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
clearPoolSelectionStrategies() - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
clearScoreBoard() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
 
clearState() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Clear the state and reset it to a start state.
clearState() - Method in class net.sourceforge.cilib.games.states.GameState
Clear the state and reset it to a start state.
clearState() - Method in class net.sourceforge.cilib.games.states.GridGameState
Clear the state and reset it to a start state.
clearState() - Method in class net.sourceforge.cilib.games.states.ListGameState
Clear the state and reset it to a start state.
Cloneable - Interface in net.sourceforge.cilib.util
This interface provides a publicly available getClone() method that can be used to obtain a cloned version of the instance on which the method was invoked.
ClonedPopulationInitialisationStrategy - Class in net.sourceforge.cilib.algorithm.initialisation
Create a collection of entities by cloning the given prototype Entity.
ClonedPopulationInitialisationStrategy() - Constructor for class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Create an instance of the ClonedPopulationInitialisationStrategy.
ClonedPopulationInitialisationStrategy(ClonedPopulationInitialisationStrategy) - Constructor for class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Copy constructor.
close() - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
closeNodeScope(Node, int) - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
closeNodeScope(Node, boolean) - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
ClosestEntityVisitor - Class in net.sourceforge.cilib.entity.visitor
Vistor to calculate the closest entity to the provided targetEntity using a DistanceMeasure.
ClosestEntityVisitor() - Constructor for class net.sourceforge.cilib.entity.visitor.ClosestEntityVisitor
 
ClusterableDataSet - Interface in net.sourceforge.cilib.problem.dataset
All datasets that will be clustered have to implement this interface.
ClusterableDataSet.Pattern - Class in net.sourceforge.cilib.problem.dataset
TODO: Complete this javadoc.
ClusterableDataSet.Pattern(String, Vector) - Constructor for class net.sourceforge.cilib.problem.dataset.ClusterableDataSet.Pattern
 
ClusterableDataSet.Pattern(ClusterableDataSet.Pattern) - Constructor for class net.sourceforge.cilib.problem.dataset.ClusterableDataSet.Pattern
 
ClusterCenterStrategy - Interface in net.sourceforge.cilib.functions.clustering.clustercenterstrategies
A strategy to determine what is meant by the center of a cluster.
clusterCenterStrategy - Variable in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
ClusterCentroidStrategy - Class in net.sourceforge.cilib.functions.clustering.clustercenterstrategies
The center of a cluster is interpreted as the centroid of a cluster.
ClusterCentroidStrategy() - Constructor for class net.sourceforge.cilib.functions.clustering.clustercenterstrategies.ClusterCentroidStrategy
 
ClusteringFitnessFunction - Class in net.sourceforge.cilib.functions.clustering
This abstract class defines member variables and member functions that can be used by subclasses to calculate the fitness of a particular clustering in their respective evaluate methods.
This class makes extensive use of the ClusteringUtils helper class.
ClusteringFitnessFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
This constructor cannot be called directly since this is an abstract class.
ClusteringProblem - Class in net.sourceforge.cilib.problem
This class is used to setup/configure a problem that is capable of clustering the data in a dataset, more specifically the data contained in an AssociatedPairDataSetBuilder.
ClusteringProblem() - Constructor for class net.sourceforge.cilib.problem.ClusteringProblem
 
ClusteringProblem(ClusteringProblem) - Constructor for class net.sourceforge.cilib.problem.ClusteringProblem
 
ClusteringUtils - Class in net.sourceforge.cilib.util
A class that simplifies clustering when making use of a ClusteringProblem, a ClusterableDataSet and a ClusteringFitnessFunction.
ClusterMeanStrategy - Class in net.sourceforge.cilib.functions.clustering.clustercenterstrategies
The center of a cluster is interpreted as the mean of a cluster.
ClusterMeanStrategy() - Constructor for class net.sourceforge.cilib.functions.clustering.clustercenterstrategies.ClusterMeanStrategy
 
clustersFormed - Variable in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
CoevolutionAlgorithm - Class in net.sourceforge.cilib.coevolution
This is the framework for a coevolution algorithm, either competitive or cooperative
CoevolutionAlgorithm() - Constructor for class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
CoevolutionAlgorithm(CoevolutionAlgorithm) - Constructor for class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
CoevolutionCompetitorList - Class in net.sourceforge.cilib.coevolution.competitors
This class maintains a list of competitors per population for a coevolution problem.
CoevolutionCompetitorList() - Constructor for class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
CoevolutionCompetitorList(int) - Constructor for class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
CoevolutionCompetitorList(CoevolutionCompetitorList) - Constructor for class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
coevolutionIterationStrategy - Variable in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
CoevolutionIterationStrategy - Class in net.sourceforge.cilib.coevolution
Parent class of CompetitiveCoevolutionIterationStrategy and CooperativeCoevolutionIterationStrategy.
CoevolutionIterationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.CoevolutionIterationStrategy
 
CoevolutionOptimisationProblem - Interface in net.sourceforge.cilib.problem.coevolution
This interface should be extended by any problem that should be optimised using a CoevolutionAlgorithm
CoevolutionSynchronousIterationStrategy - Class in net.sourceforge.cilib.coevolution
FIXME: Remove this class.
CoevolutionSynchronousIterationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.CoevolutionSynchronousIterationStrategy
 
cognitiveAcceleration - Variable in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
 
CoherenceParticle - Class in net.sourceforge.cilib.pso.particle
 
CoherenceParticle() - Constructor for class net.sourceforge.cilib.pso.particle.CoherenceParticle
Creates a new instance of StandardParticle.
CoherenceParticle(CoherenceParticle) - Constructor for class net.sourceforge.cilib.pso.particle.CoherenceParticle
Copy Constructor.
CoherenceVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
Velocity update for the Coherence PSO.
CoherenceVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.CoherenceVelocityUpdate
Create an instance of CoherenceVelocityUpdate.
CoherenceVelocityUpdate(CoherenceVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.CoherenceVelocityUpdate
Copy constructor.
collides(AbstractShape) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Check whether one of the blocks in the AbstractShape collides in the current grid
collides(List<TetrisBlock>) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Check whether one of the blocks in the list collides in the current grid
column - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
Colville - Class in net.sourceforge.cilib.functions.continuous.unconstrained
The Colville Function.
Colville() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Colville
Creates a new instance of Colville.
combination(double, double) - Static method in class net.sourceforge.cilib.math.Maths
Return the combination of n and r.
compare(E, E) - Method in class net.sourceforge.cilib.entity.comparator.AscendingFitnessComparator
Compare the Entity objects returning the desired ordering.
compare(E, E) - Method in class net.sourceforge.cilib.entity.comparator.DescendingFitnessComparator
Compare the Entity objects returning the desired ordering.
compare(E, E) - Method in class net.sourceforge.cilib.entity.comparator.NaturalOrderFitnessComparator
compare(E, E) - Method in class net.sourceforge.cilib.entity.comparator.SocialBestFitnessComparator
compare(Selection.Entry<E>, Selection.Entry<E>) - Method in class net.sourceforge.cilib.util.selection.ordering.DefaultComparator
Compares its two arguments for order.
compareTo(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
compareTo(RNAStem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
compareTo(Entity) - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
compareTo(Pair<K, V>) - Method in class net.sourceforge.cilib.container.Pair
compareTo(Entity) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
compareTo(Entity) - Method in class net.sourceforge.cilib.ec.Individual
compareTo(Entity) - Method in interface net.sourceforge.cilib.entity.Entity
compareTo(Entity) - Method in class net.sourceforge.cilib.entity.Harmony
compareTo(Fitness) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
compareTo(Fitness) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
compareTo(Fitness) - Method in interface net.sourceforge.cilib.problem.Fitness
Compare the current fitness instance to the provided instance.
compareTo(Fitness) - Method in class net.sourceforge.cilib.problem.InferiorFitness
Returns -1, unless other is also the InferiorFitness instance.
compareTo(Fitness) - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Returns superior fitness for larger fitness values.
compareTo(Fitness) - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Compare the current fitness instance to the provided instance.
compareTo(Fitness) - Method in class net.sourceforge.cilib.problem.MOFitness
Compare the current fitness instance to the provided instance.
compareTo(OptimisationSolution) - Method in class net.sourceforge.cilib.problem.OptimisationSolution
compareTo(Entity) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
compareTo(Entity) - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
compareTo(Entity) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
compareTo(Numeric) - Method in class net.sourceforge.cilib.type.types.Bit
compareTo(Numeric) - Method in class net.sourceforge.cilib.type.types.Int
compareTo(Numeric) - Method in class net.sourceforge.cilib.type.types.Long
compareTo(Numeric) - Method in class net.sourceforge.cilib.type.types.Numeric
compareTo(Numeric) - Method in class net.sourceforge.cilib.type.types.Real
CompetitiveCoevolutionGameLearningOptimizationProblem - Class in net.sourceforge.cilib.problem.coevolution
This class is used by CoevolutionAlgorithm to optimize a Game.
CompetitiveCoevolutionGameLearningOptimizationProblem() - Constructor for class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
 
CompetitiveCoevolutionGameLearningOptimizationProblem(CompetitiveCoevolutionGameLearningOptimizationProblem) - Constructor for class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
Copy constructor
CompetitiveCoevolutionIterationStrategy - Class in net.sourceforge.cilib.coevolution
This iteration strategy defines methods to select opponents.
CompetitiveCoevolutionIterationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
CompetitiveCoevolutionIterationStrategy(CompetitiveCoevolutionIterationStrategy) - Constructor for class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
CompetitiveCoevolutionParticleReevaluationResponseStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
This class re-calculates all the personal best positions in the population.
CompetitiveCoevolutionParticleReevaluationResponseStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.CompetitiveCoevolutionParticleReevaluationResponseStrategy
 
CompetitiveCoevolutionParticleReevaluationResponseStrategy(CompetitiveCoevolutionParticleReevaluationResponseStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.CompetitiveCoevolutionParticleReevaluationResponseStrategy
 
CompetitiveCoevolutionProblemAdapter - Class in net.sourceforge.cilib.problem.coevolution
This class is used by the sub populations of a competitive coevolution algorithm.
CompetitiveCoevolutionProblemAdapter(int, DomainRegistry, CoevolutionOptimisationProblem) - Constructor for class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
 
CompetitiveCoevolutionProblemAdapter(CompetitiveCoevolutionProblemAdapter) - Constructor for class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
 
Competitor - Class in net.sourceforge.cilib.coevolution.competitors
 
Competitor(Type, Fitness, int) - Constructor for class net.sourceforge.cilib.coevolution.competitors.Competitor
 
Competitor(Type, int) - Constructor for class net.sourceforge.cilib.coevolution.competitors.Competitor
 
Competitor(Competitor) - Constructor for class net.sourceforge.cilib.coevolution.competitors.Competitor
 
CompositeMeasurement - Class in net.sourceforge.cilib.measurement.multiple
Measurement to perform measurements on a set of contained Algorithm instances.
CompositeMeasurement() - Constructor for class net.sourceforge.cilib.measurement.multiple.CompositeMeasurement
Create a new instance with zero measurements.
CompositeOperator - Class in net.sourceforge.cilib.entity.operators
Create a composte list of Operator instances.
CompositeOperator() - Constructor for class net.sourceforge.cilib.entity.operators.CompositeOperator
Create an new instance and initialize the internal operator list.
CompositeOperator(CompositeOperator) - Constructor for class net.sourceforge.cilib.entity.operators.CompositeOperator
Copy constructor.
CompoundSelection - Class in net.sourceforge.cilib.entity.operators.selection
This class implements the Composite design pattern to correctly apply a group of selection operators to perform a specific selection.
CompoundSelection() - Constructor for class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
 
CompoundSelection(CompoundSelection) - Constructor for class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
 
computationData - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
computeActivationFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
computeActivationFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
computeActivationFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
computeActivationFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
computeActivationFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
computeActivationFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
computeActivationFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
computeActivationFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
computeBaseDelta(Type, Type, Type) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.ErrorSignal
 
computeBaseDelta(Type, Type, Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.SquaredErrorFunction
computeDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
computeDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
 
computeDerivativeAtPos(Type) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
 
computeDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated.  
computeDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
computeDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
computeDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
 
computeDerivativeUsingLastOutput(Type) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
 
computeDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated.  
computeDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
computeErrorIteration(NNError[], TypeList, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
computeFunction(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
computeFunction(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
 
computeFunction(Type) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
 
computeFunction(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated.  
computeFunction(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
computeIteration(TypeList, NNPattern) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
computeIteration(TypeList, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
computeIteration(TypeList, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
computeOutput(NeuronConfig, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
computeOutput(NeuronConfig, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
computeOutput(NeuronConfig, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
computeOutput(NeuronConfig, NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
computeOutputFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
computeOutputFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
computeOutputFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
computeOutputFunctionDerivativeAtPos(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
computeOutputFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.BiasNeuronConfig
 
computeOutputFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
computeOutputFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
computeOutputFunctionDerivativeUsingLastOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
computeRecursiveDelta(Type, TypeList, ArrayList<Weight>, Type) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.ErrorSignal
 
computeRecursiveDelta(Type, TypeList, ArrayList<Weight>, Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.SquaredErrorFunction
conflictsWith(RNAStem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
Uses the StemConflictTable Singleton class to look up conflicts quicker.
ConstantControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter to represent a constant value.
ConstantControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Create a new instance of ConstantControlParameter.
ConstantControlParameter(double) - Constructor for class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Create a new instance of ConstantControlParameter with the provided value as the value for the ControlParameter.
ConstantControlParameter(ConstantControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Create a copy of the provided instance.
ConstrainedArchive - Class in net.sourceforge.cilib.moo.archive.constrained
An Archive constrained by the number of solutions that it can store.
ConstrainedArchive() - Constructor for class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
 
ConstrictionVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
A velocity update strategy that utilizes the constriction coefficient as developed by Clerc.
ConstrictionVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Default constructor.
ConstrictionVelocityUpdate(ConstrictionVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Copy constructor.
containedInside(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
Returns true if this pair is 'inside' or 'internal' pair of other pair.
contains(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
Returns true if other pair is 'inside' or 'internal' to this pair.
contains(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Determine if the current RNAConformation contains the provided NucleotidePair.
contains(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
contains(Object) - Method in class net.sourceforge.cilib.container.SortedList
Returns true if this list contains the specified element.
contains(Object) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
contains(Object) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
contains(Object) - Method in interface net.sourceforge.cilib.entity.Topology
contains(Object) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
contains(Object) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
contains(Object) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
contains(E) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Determine if element is contained within the Structure.
contains(E) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Determine if element is contained within the Structure.
contains(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Determine if element is contained within the Structure.
contains(E) - Method in class net.sourceforge.cilib.type.types.container.Set
Determine if element is contained within the Structure.
contains(E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Determine if element is contained within the Structure.
contains(E) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Determine if element is contained within the Structure.
contains(Type) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Determine if element is contained within the Structure.
contains(Numeric) - Method in class net.sourceforge.cilib.type.types.container.Vector
Returns true if the specified element is contained within the current Vector.
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.container.SortedList
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
containsAll(Collection<?>) - Method in interface net.sourceforge.cilib.entity.Topology
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
containsAll(Collection<?>) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
context - Variable in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
context - Variable in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
ContinuousFunction - Class in net.sourceforge.cilib.functions
 
ContinuousFunction() - Constructor for class net.sourceforge.cilib.functions.ContinuousFunction
Create an instance of ContinuousFunction.
ContinuousFunction(ContinuousFunction) - Constructor for class net.sourceforge.cilib.functions.ContinuousFunction
Copy constructor.
ContinuousStep - Class in net.sourceforge.cilib.functions.continuous
The continuous Step function.
ContinuousStep() - Constructor for class net.sourceforge.cilib.functions.continuous.ContinuousStep
Creates a new instance of Step.
ContributionUpdateStrategy - Interface in net.sourceforge.cilib.cooperative.contributionupdatestrategies
TODO: Complete this javadoc.
contributionUpdateStrategy - Variable in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
ControlParameter - Interface in net.sourceforge.cilib.controlparameter
A control parameter is a parameter that is used within most algorithm types.
controlParameter - Variable in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
 
ConvergedDimensions - Class in net.sourceforge.cilib.measurement.single
Calculates the average number of dimensions over all particles that have converged within a specified error from the specified optimum.
ConvergedDimensions() - Constructor for class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Creates a new instance of ConvergedDimensions.
ConvergedDimensions(ConvergedDimensions) - Constructor for class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Copy constructor.
CooperativeEntity - Class in net.sourceforge.cilib.cooperative
 
CooperativeEntity() - Constructor for class net.sourceforge.cilib.cooperative.CooperativeEntity
 
CooperativeEntity(CooperativeEntity) - Constructor for class net.sourceforge.cilib.cooperative.CooperativeEntity
 
CooperativeOptimisationProblemAdapter - Class in net.sourceforge.cilib.problem
TODO test this class.
CooperativeOptimisationProblemAdapter(OptimisationProblem, CooperativeEntity, int, int) - Constructor for class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
Creates an OptimisationProblemAdapter that has the specified dimension starting at the given offset (index) position of the full given problem.
CooperativeOptimisationProblemAdapter(CooperativeOptimisationProblemAdapter) - Constructor for class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
CosineDistanceMeasure - Class in net.sourceforge.cilib.util
The Cosine Distance Measure (or vector dot product) is not a distance measure, but rather a similarity metric.
CosineDistanceMeasure() - Constructor for class net.sourceforge.cilib.util.CosineDistanceMeasure
 
countCellsInRow(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Count all the Blocks that are in the given row
create(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
Creates a matrix of dimensions size*size.
create(Entity, Entity, Topology<? extends Entity>) - Method in interface net.sourceforge.cilib.entity.operators.creation.CreationStrategy
Create an Entity, based on the provided parameters.
create(Entity, Entity, Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.operators.creation.RandCreationStrategy
Create an Entity, based on the provided parameters.
create(Niche) - Method in interface net.sourceforge.cilib.pso.niching.NicheCreationStrategy
 
create(Niche) - Method in class net.sourceforge.cilib.pso.niching.StandardSwarmCreationStrategy
 
create() - Method in class net.sourceforge.cilib.type.creator.B
Create the type in a standard fashion.
create(double) - Method in class net.sourceforge.cilib.type.creator.B
Create the type with the specified value.
create(double, double) - Method in class net.sourceforge.cilib.type.creator.B
Create the type using the bounds lower and upper.
create() - Method in class net.sourceforge.cilib.type.creator.R
Create the type in a standard fashion.
create(double) - Method in class net.sourceforge.cilib.type.creator.R
Create the type with the specified value.
create(double, double) - Method in class net.sourceforge.cilib.type.creator.R
Create the type using the bounds lower and upper.
create() - Method in class net.sourceforge.cilib.type.creator.T
Create the type in a standard fashion.
create(double) - Method in class net.sourceforge.cilib.type.creator.T
Create the type with the specified value.
create(double, double) - Method in class net.sourceforge.cilib.type.creator.T
Create the type using the bounds lower and upper.
create() - Method in interface net.sourceforge.cilib.type.creator.TypeCreator
Create the type in a standard fashion.
create(double) - Method in interface net.sourceforge.cilib.type.creator.TypeCreator
Create the type with the specified value.
create(double, double) - Method in interface net.sourceforge.cilib.type.creator.TypeCreator
Create the type using the bounds lower and upper.
create() - Method in class net.sourceforge.cilib.type.creator.Z
Create the type in a standard fashion.
create(double) - Method in class net.sourceforge.cilib.type.creator.Z
Create the type with the specified value.
create(double, double) - Method in class net.sourceforge.cilib.type.creator.Z
Create the type using the bounds lower and upper.
create(Bounds) - Static method in class net.sourceforge.cilib.type.types.BoundsFactory
Create a new Bounds object, or alternatively return a precreated instance.
create(double, double) - Static method in class net.sourceforge.cilib.type.types.BoundsFactory
Create a new Bounds instance.
create(T...) - Static method in class net.sourceforge.cilib.util.Vectors
Utility method to create a Vector, given any number of Number instances.
createLayerList() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
Assemble the Neural Network
createLayerList() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
Assemble the Neural Network
createLayerList() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.InputOutputGenericTopologyBuilder
Assemble the Neural Network
createNewShape() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Create a new random Tetris shape at the top of the grid
CreationStrategy - Interface in net.sourceforge.cilib.entity.operators.creation
Creation operator definition.
CriterionBasedMOProblemAdapter - Class in net.sourceforge.cilib.moo.criterion
Serves as an adapter for a MOOptimisationProblem and converts it to a single-objective optimisation problem by selecting one of the sub-objectives as its active objective.
CriterionBasedMOProblemAdapter(MOOptimisationProblem) - Constructor for class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
CriterionBasedMOProblemAdapter(CriterionBasedMOProblemAdapter) - Constructor for class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
cross(Vector) - Method in interface net.sourceforge.cilib.math.VectorMath
Get the cross-product vector based on the current Vector and the given Vector.
cross(Vector) - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the cross-product vector based on the current Vector and the given Vector.
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionBinomialCrossover
Perform the cross-over based on the binomial method for recombination.
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionExponentialCrossover
Perform the cross-over based on the exponential method for recombination.
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.OnePointCrossoverStrategy
 
crossover(List<Entity>) - Method in class net.sourceforge.cilib.entity.operators.crossover.UniformCrossoverStrategy
CrossoverStrategy - Class in net.sourceforge.cilib.entity.operators.crossover
 
CrossoverStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
CrossoverStrategy(CrossoverStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
CrossValidationStrategy - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
TODO: Complete this javadoc.
CrossValidationStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
curChar - Variable in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
 
current() - Method in interface net.sourceforge.cilib.cooperative.algorithmiterators.AlgorithmIterator
 
current() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Returns the element at the current index.
current() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Returns the element at the current index.
currentAlgorithm - Variable in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
CurrentFitness<E extends Entity> - Class in net.sourceforge.cilib.util.selection.weighing.entity
Obtain the current fitness of an entity.
CurrentFitness() - Constructor for class net.sourceforge.cilib.util.selection.weighing.entity.CurrentFitness
 
currentIteration - Variable in class net.sourceforge.cilib.games.states.GameState
 
currentPlayer - Variable in class net.sourceforge.cilib.games.game.Game
 
currentPos() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
currentPos() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
currentPosition() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
currentPosition() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
currentSeed - Variable in class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
currentShapeCollides() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Check whether one of the blocks in the current shape of the game collides in the grid
currentState - Variable in class net.sourceforge.cilib.games.states.ListGameState
 
currentToken - Variable in exception net.sourceforge.cilib.type.parser.ParseException
This is the last token that has been consumed successfully.
CurvilinearCompEvaluator - Class in net.sourceforge.cilib.problem.mappingproblem
Implements the Curvilinear Component function for evaluating the fitness of the Mapping problem.
CurvilinearCompEvaluator() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.CurvilinearCompEvaluator
 
CurvilinearDistEvaluator - Class in net.sourceforge.cilib.problem.mappingproblem
Implements the Curvilinear Distance function for evaluating the fitness of the Mapping problem.
CurvilinearDistEvaluator() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
 

D

Damavandi - Class in net.sourceforge.cilib.functions.continuous.unconstrained
The Damavandi function obtained from N.
Damavandi() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Damavandi
Create a new instance of Damavandi.
data - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
data - Variable in class net.sourceforge.cilib.problem.dataset.ClusterableDataSet.Pattern
 
DataDistributionStrategy - Interface in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
TODO: Complete this javadoc.
DataSet - Class in net.sourceforge.cilib.problem.dataset
This interface provides an abstraction for accessing data sets.
DataSet() - Constructor for class net.sourceforge.cilib.problem.dataset.DataSet
 
DataSet(DataSet) - Constructor for class net.sourceforge.cilib.problem.dataset.DataSet
 
DataSetBasedCentroidsInitialisationStrategy - Class in net.sourceforge.cilib.clustering.kmeans
This strategy initializes the parts of the returned centroids Vector from randomly chosen patterns in the dataset.
DataSetBasedCentroidsInitialisationStrategy() - Constructor for class net.sourceforge.cilib.clustering.kmeans.DataSetBasedCentroidsInitialisationStrategy
Create a new instance of DataSetBasedCentroidsInitialisationStrategy.
DataSetBasedPositionInitialisationStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
This strategy initializes the position as well as the best position of a Particle using the DataSetBasedCentroidsInitialisationStrategy.
DataSetBasedPositionInitialisationStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.DataSetBasedPositionInitialisationStrategy
 
DataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
 
DataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
DataSetBuilder(DataSetBuilder) - Constructor for class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
dataSetBuilder - Variable in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
 
DataSetManager - Class in net.sourceforge.cilib.problem.dataset
This class is a Singleton and is responsible for managing all the DataSets and DataSetBuilders that might be instantiated by a Simulation, Problem or Thread.
dataSets - Variable in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
DaviesBouldinIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Davies-Bouldin Validity Index.
DaviesBouldinIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.DaviesBouldinIndex
 
DcPatternCount - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
DcPatternCount() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DcPatternCount
 
DcPatternCount(DcPatternCount) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DcPatternCount
 
debugStream - Variable in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Debug output.
decodeBitString(Vector) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
DEFAULT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
Lexical state.
DefaultComparator<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.ordering
A Comparator that orders objects in a natural ordering.
DefaultComparator() - Constructor for class net.sourceforge.cilib.util.selection.ordering.DefaultComparator
 
DeflectionBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
Particles that overstep the boundary get re-initialised to simulate a bouncing effect by flipping the velocity (multiplying it with -1.0).
DeflectionBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
Create a new instance.
DeflectionBoundaryConstraint(DeflectionBoundaryConstraint) - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
Create a copy of the provided instance.
delimiter - Variable in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
DEPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
Implementation of the DE PSO of Hendtlass.
DEPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.DEPositionUpdateStrategy
 
DEPositionUpdateStrategy(DEPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.DEPositionUpdateStrategy
 
depthFirstTraversal(PrePostVisitor<E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Perform a depth first traversal of the current Tree node, executing the operation stored within the provided Visitor instance.
depthFirstTraversal(PrePostVisitor<E>) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Perform a depth first traversal of the current Tree node, executing the operation stored within the provided Visitor instance.
depthFirstTraversal(PrePostVisitor<E>) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Perform a depth first traversal of the current Tree node, executing the operation stored within the provided Visitor instance.
DeratingFunctionMaximisationProblem - Class in net.sourceforge.cilib.problem
Title: DeratingFunctionMaximisationProblem
DeratingFunctionMaximisationProblem() - Constructor for class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
The default constuctor.
DescendingFitnessComparator<E extends Entity> - Class in net.sourceforge.cilib.entity.comparator
Comparator to order Entity instances based on fitness values.
DescendingFitnessComparator() - Constructor for class net.sourceforge.cilib.entity.comparator.DescendingFitnessComparator
 
DesiredMaximizationFitness - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class serves as a crude implementation of a stopping condition that forces the optimizer to stop whenever a arbitrary fitness has been reached.
DesiredMaximizationFitness() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
DesiredMaximizationFitness(DesiredMaximizationFitness) - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
detect(E) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
Check the environment in which the specified PSO algorithm is running for changes.
detect(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.NeighbourhoodBestSentriesDetectionStrategy
 
detect(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.PeriodicDetectionStrategy
 
detect(E) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
After every EnvironmentChangeDetectionStrategy.interval iterations, pick a number of random entities from the given algorithm's topology and compare their previous fitness values with their current fitness values.
detect(E) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated. Check for environment change: Pick the specified number of random particles (sentries) and evaluate their current positions.
detect(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryPointsDetectionStrategy
After every EnvironmentChangeDetectionStrategy.interval iterations, iterate through all sentry points and compare their previous fitness values with their current fitness values.
detect(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.TopologyBestSentryDetectionStrategy
 
DeviationDecorator - Class in net.sourceforge.cilib.pso.particle
 
DeviationDecorator(Particle, int) - Constructor for class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
DgPatternCount - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
DgPatternCount() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DgPatternCount
 
DgPatternCount(DgPatternCount) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DgPatternCount
 
Diameter - Class in net.sourceforge.cilib.measurement.single
Calculates the swarm diameter as the maximum euclidean distance between any two particles.
Diameter() - Constructor for class net.sourceforge.cilib.measurement.single.Diameter
Creates a new instance of SwarmDiameter.
Diameter(Diameter) - Constructor for class net.sourceforge.cilib.measurement.single.Diameter
Copy constructor.
DiameterVisitor - Class in net.sourceforge.cilib.entity.visitor
Visitor to determine the size of the diameter of the provided Topology within the visit method.
DiameterVisitor() - Constructor for class net.sourceforge.cilib.entity.visitor.DiameterVisitor
 
didChange() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
Differentiable - Interface in net.sourceforge.cilib.functions
 
DifferentialEvolutionBinomialCrossover - Class in net.sourceforge.cilib.entity.operators.crossover
Binomial crossover operator.
DifferentialEvolutionBinomialCrossover() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionBinomialCrossover
 
DifferentialEvolutionExponentialCrossover - Class in net.sourceforge.cilib.entity.operators.crossover
 
DifferentialEvolutionExponentialCrossover() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionExponentialCrossover
 
DifferentialEvolutionIterationStrategy - Class in net.sourceforge.cilib.ec.iterationstrategies
Evolutionary Strategy to implement the Differential Evolutionary Algorithm.
DifferentialEvolutionIterationStrategy() - Constructor for class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Create an instance of the DifferentialEvolutionIterationStrategy.
DifferentialEvolutionIterationStrategy(DifferentialEvolutionIterationStrategy) - Constructor for class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Copy constructor.
DIGIT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
dimension - Variable in class net.sourceforge.cilib.boa.bee.AbstractBee
 
dimension - Variable in class net.sourceforge.cilib.ec.Individual
 
dimension() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
DimensionBoundViolationsPerParticle - Class in net.sourceforge.cilib.measurement.single
Calculates the average number of violations of boundary constraints with respect to each dimension.
DimensionBoundViolationsPerParticle() - Constructor for class net.sourceforge.cilib.measurement.single.DimensionBoundViolationsPerParticle
Creates a new instance of DimensionBoundViolationsPerParticle.
DimensionBoundViolationsPerParticle(DimensionBoundViolationsPerParticle) - Constructor for class net.sourceforge.cilib.measurement.single.DimensionBoundViolationsPerParticle
Copy constructor.
dimensions - Variable in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
disable_tracing() - Method in class net.sourceforge.cilib.type.parser.DomainParser
Disable tracing.
DiscreteFunction - Class in net.sourceforge.cilib.functions
 
DiscreteFunction() - Constructor for class net.sourceforge.cilib.functions.DiscreteFunction
Create an instance of DiscreteFunction.
DiscreteOptimisationProblem - Class in net.sourceforge.cilib.problem
This class further extends the logical separation between a standard type of problem, usually placed in the real valued space, to enable Discrete problems.
DiscreteOptimisationProblem() - Constructor for class net.sourceforge.cilib.problem.DiscreteOptimisationProblem
 
DiscreteRandomNumber - Class in net.sourceforge.cilib.math.random
 
display() - Method in class net.sourceforge.cilib.games.game.Game
Print the game to the console, is useful during testing.
display() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
Print the game to the console, is useful during testing.
display() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Print the game to the console, is useful during testing.
display() - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Print the game to the console, is useful during testing.
DissipativeStep - Class in net.sourceforge.cilib.pso
TODO: This needs to be checked
DissipativeStep() - Constructor for class net.sourceforge.cilib.pso.DissipativeStep
Creates a new instance of DissipativeStep.
distance(E, E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Determine the distance between the provided vertex objects.
distance(U, U) - Method in class net.sourceforge.cilib.util.AbsoluteDistanceMeasure
Deprecated. Determine the distance between the two provided StructuredType instances.
distance(T, T) - Method in class net.sourceforge.cilib.util.AbsoluteDistanceMeasure
Deprecated. Determine the distance between the two provided Collections.
distance(U, U) - Method in class net.sourceforge.cilib.util.ChebyshevDistanceMeasure
Calculate the distance between two vectors.
distance(T, T) - Method in class net.sourceforge.cilib.util.ChebyshevDistanceMeasure
Calculate the distance between two vectors represented by Java Collection objects.
distance(U, U) - Method in class net.sourceforge.cilib.util.CosineDistanceMeasure
Calculate the "distance" (dot product) between (of) two vectors.
distance(T, T) - Method in class net.sourceforge.cilib.util.CosineDistanceMeasure
Calculate the "distance" (dot product) between (of) two vectors represented by Java Collection objects.
distance(U, U) - Method in interface net.sourceforge.cilib.util.DistanceMeasure
Determine the distance between the two provided StructuredType instances.
distance(T, T) - Method in interface net.sourceforge.cilib.util.DistanceMeasure
Determine the distance between the two provided Collections.
distance(U, U) - Method in class net.sourceforge.cilib.util.MinkowskiMetric
Calculate the distance between two vectors.
distance(T, T) - Method in class net.sourceforge.cilib.util.MinkowskiMetric
Calculate the distance between two vectors represented by Java Collection objects.
distanceMeasure - Variable in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
distanceMeasure - Variable in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
distanceMeasure - Variable in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
DistanceMeasure - Interface in net.sourceforge.cilib.util
Definition of how to determine the distance between two objects.
DistanceMetric - Interface in net.sourceforge.cilib.problem.mappingproblem
Represents a method for calculating the structure distance between two vectors in a MappingProblem.
distributor - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
Diversity - Class in net.sourceforge.cilib.measurement.single
Function to calculate the diversity of a swarm according to the definition of Krink et al
Diversity() - Constructor for class net.sourceforge.cilib.measurement.single.Diversity
 
Diversity(Diversity) - Constructor for class net.sourceforge.cilib.measurement.single.Diversity
 
Diversity - Class in net.sourceforge.cilib.measurement.single.diversity
TODO: Add JavaDoc.
Diversity() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
Diversity(Diversity) - Constructor for class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
divide(double) - Method in interface net.sourceforge.cilib.math.VectorMath
Divide the elements of the current Vector by the provided scalar.
divide(double) - Method in class net.sourceforge.cilib.type.types.container.Vector
Divide the elements of the current Vector by the provided scalar.
DNGuideSelectionStrategy - Class in net.sourceforge.cilib.pso.moo.guideselectionstrategies
Dynamic Neighbourhood Guide Selection Strategy Placeholder class for anybody interested in implementing this Multi-objective PSO.
DNGuideSelectionStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.DNGuideSelectionStrategy
 
doJob() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DynamicProgramming
 
domainElement() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
DomainParser - Class in net.sourceforge.cilib.type.parser
 
DomainParser(InputStream) - Constructor for class net.sourceforge.cilib.type.parser.DomainParser
Constructor with InputStream.
DomainParser(InputStream, String) - Constructor for class net.sourceforge.cilib.type.parser.DomainParser
Constructor with InputStream and supplied encoding
DomainParser(Reader) - Constructor for class net.sourceforge.cilib.type.parser.DomainParser
Constructor.
DomainParser(DomainParserTokenManager) - Constructor for class net.sourceforge.cilib.type.parser.DomainParser
Constructor with generated Token Manager.
DomainParser.DomainNode - Class in net.sourceforge.cilib.type.parser
 
DomainParser.DomainNode() - Constructor for class net.sourceforge.cilib.type.parser.DomainParser.DomainNode
 
DomainParser.DomainNode(String) - Constructor for class net.sourceforge.cilib.type.parser.DomainParser.DomainNode
 
DomainParserConstants - Interface in net.sourceforge.cilib.type.parser
Token literal values and constants.
DomainParserTokenManager - Class in net.sourceforge.cilib.type.parser
Token Manager.
DomainParserTokenManager(SimpleCharStream) - Constructor for class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Constructor.
DomainParserTokenManager(SimpleCharStream, int) - Constructor for class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Constructor.
DomainParserTreeConstants - Interface in net.sourceforge.cilib.type.parser
 
DomainParserVisitor - Interface in net.sourceforge.cilib.type.parser
 
DomainParserVisitorImpl - Class in net.sourceforge.cilib.type.parser
 
DomainParserVisitorImpl() - Constructor for class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
 
DomainPercentageVelocityInitialisationStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
TODO: this class should be refactored to use the RandomInitialVelocityStrategy or to be a compound operation where the velocity is first randomised and then scaled by a percentage.
DomainPercentageVelocityInitialisationStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
DomainPercentageVelocityInitialisationStrategy(DomainPercentageVelocityInitialisationStrategy) - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
DomainRegistry - Interface in net.sourceforge.cilib.type
 
DominantGuideUpdateStrategy - Class in net.sourceforge.cilib.pso.moo.guideupdatestrategies
Implementation of GuideUpdateStrategy where a particle's guide gets updated if and only if the new guide dominates the previous guide.
DominantGuideUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideupdatestrategies.DominantGuideUpdateStrategy
 
DominantGuideUpdateStrategy(GuideUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.moo.guideupdatestrategies.DominantGuideUpdateStrategy
 
dominates(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.Archive
Checks the entire archive and accumulates the solutions that dominates candidateSolution.
dominates(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
dominates(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
dominates(MOFitness) - Method in class net.sourceforge.cilib.problem.MOFitness
 
Done() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reset buffer when finished.
dot(Vector) - Method in interface net.sourceforge.cilib.math.VectorMath
Calculate the vector dot product of the current Vector and the given Vector.
dot(Vector) - Method in class net.sourceforge.cilib.type.types.container.Vector
Calculate the vector dot product of the current Vector and the given Vector.
DotProductNeuronConfig - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
TODO: Complete this javadoc.
DotProductNeuronConfig() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
DotProductNeuronConfig(int, Type, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
DotProductNeuronConfig(NeuronConfig[], Weight[], boolean[], int, Weight, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
draw(Fitness) - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Indicate that the entity that is contained in this EntityScore has drawn.
DrawResult - Class in net.sourceforge.cilib.games.result
 
DrawResult() - Constructor for class net.sourceforge.cilib.games.result.DrawResult
 
DtPatternCount - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete the javadoc.
DtPatternCount() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DtPatternCount
 
DtPatternCount(DtPatternCount) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DtPatternCount
 
DualReactionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
This reaction strategy wraps both a ReinitializationReactionStrategy and a ReevaluationReactionStrategy.
DualReactionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
DualReactionStrategy(DualReactionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
dummyEval(double[]) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
dump(String) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
DunnIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Dunn Validity Index.
DunnIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex
Create an instance of this index.
DunnIndex33 - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Dunn Index 33.
DunnIndex33() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex33
 
DunnIndex53 - Class in net.sourceforge.cilib.functions.clustering.validityindices
DunnIndex53.
DunnIndex53() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex53
 
DvPatternCount - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
DvPatternCount() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DvPatternCount
 
DvPatternCount(DvPatternCount) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DvPatternCount
 
DynamicFunction - Interface in net.sourceforge.cilib.functions
 
DynamicIterationStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic
Dynamic iteration strategy for PSO in dynamic environments.
DynamicIterationStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Create a new instance of DynamicIterationStrategy.
DynamicIterationStrategy(DynamicIterationStrategy) - Constructor for class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Create a copy of the provided instance.
DynamicParticle - Class in net.sourceforge.cilib.pso.dynamic
Special particle type to use with dynamic algorithms.
DynamicParticle() - Constructor for class net.sourceforge.cilib.pso.dynamic.DynamicParticle
 
DynamicParticle(DynamicParticle) - Constructor for class net.sourceforge.cilib.pso.dynamic.DynamicParticle
 
DynamicPatternSelectionData - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
DynamicPatternSelectionData() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
DynamicProgramming - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class implements a technique for pairwise sequence alignment known as Dynamic Programming.
DynamicProgramming() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.DynamicProgramming
 

E

Easom - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Easom function as taken from www-optima.amp.i.kyoto-u.ac.jp/member/student/hedar/Hedar_files/TestGO_files
Easom() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Easom
Create an instance of Easom.
EC - Class in net.sourceforge.cilib.ec
Generic EC skeleton algorithm.
EC() - Constructor for class net.sourceforge.cilib.ec.EC
Create a new instance of EC.
EC(EC) - Constructor for class net.sourceforge.cilib.ec.EC
Copy constructor.
ECTopologyHolder - Class in net.sourceforge.cilib.entity.topologies
 
ECTopologyHolder() - Constructor for class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
ECTopologyHolder(Topology<? extends Entity>) - Constructor for class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
edgeCount() - Method in interface net.sourceforge.cilib.type.types.container.Graph
Determine the number of edges contained within the current Graph structure.
edgeCount() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Get the number of edges contained within the Graph.
Efn2RNAFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
Efn2RNAFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.Efn2RNAFitness
 
Efn2RNAFitness(Efn2RNAFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.Efn2RNAFitness
 
element() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
ElitistSelection<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.recipes
A recipe for Elitist selection.
ElitistSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Create a new instance with a defined comparator being DefaultComparator.
ElitistSelection(Comparator<Selection.Entry<E>>) - Constructor for class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Create a new instance with the provided Comparator.
ElitistSelection(ElitistSelection) - Constructor for class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Create a copy of the provided instance.
ElitistSelectionStrategy - Class in net.sourceforge.cilib.entity.operators.selection
 
ElitistSelectionStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
 
ElitistSelectionStrategy(ElitistSelectionStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
 
EmptyEpochStrategy - Class in net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy
An epoch strategy for a Neural Network in which the epoch performs no actions at all.
EmptyEpochStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.EmptyEpochStrategy
 
enable_tracing() - Method in class net.sourceforge.cilib.type.parser.DomainParser
Enable tracing.
endColumn - Variable in class net.sourceforge.cilib.type.parser.Token
The column number of the last character of this Token.
EndGameStateEvaluator - Class in net.sourceforge.cilib.games.agent.state.evaluation
 
EndGameStateEvaluator() - Constructor for class net.sourceforge.cilib.games.agent.state.evaluation.EndGameStateEvaluator
 
EndGameStateEvaluator(EndGameStateEvaluator) - Constructor for class net.sourceforge.cilib.games.agent.state.evaluation.EndGameStateEvaluator
 
endIndex - Variable in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
endLine - Variable in class net.sourceforge.cilib.type.parser.Token
The line number of the last character of this Token.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.BouncingBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in interface net.sourceforge.cilib.problem.boundaryconstraint.BoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.ClampingBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.PerElementReinitialisation
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.PeriodicBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.RandomBoundaryConstraint
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.ReinitialisationBoundary
Enforce the defined boundary constraint on the provided Entity.
enforce(Entity) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.UnconstrainedBoundary
This enforcement of the boundary constraint does nothing.
entities - Variable in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
Entity - Interface in net.sourceforge.cilib.entity
This is the super interface which all corresponding entity implementation and extending interfaces, for use in population based algorithms, must implement/extend from.
EntityBasedFitnessCalculator - Class in net.sourceforge.cilib.util.calculator
A fitness calculator tht is specialised to determine the fitness of an Entity instance.
EntityBasedFitnessCalculator() - Constructor for class net.sourceforge.cilib.util.calculator.EntityBasedFitnessCalculator
 
EntityFitness<E extends Entity> - Interface in net.sourceforge.cilib.util.selection.weighing.entity
Obtain the fitness of an entity.
EntityIdFactory - Class in net.sourceforge.cilib.entity
 
entityNumber - Variable in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
 
EntityScore - Class in net.sourceforge.cilib.coevolution.score
This class is used to store history of competitions the entity stored in this class against one other specific entity.
EntityScore(int, int) - Constructor for class net.sourceforge.cilib.coevolution.score.EntityScore
Create a CoevolutionEntityScore for the given entity.
EntityScoreboard - Class in net.sourceforge.cilib.coevolution.score
This class provides a means of keeping a competition history of one specific entity within a CoevolutionAlgorithm.
EntityScoreboard() - Constructor for class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Create a default score board.
EntityScoreboard(EntityScoreboard) - Constructor for class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Create a copy of the provided instance.
EntityType - Enum in net.sourceforge.cilib.entity
The defined types for all properties within Entity objects.
EntityType.Coevolution - Enum in net.sourceforge.cilib.entity
Coevolution constants...
EntityType.Individual - Enum in net.sourceforge.cilib.entity
EntityType.Individual specific constants.
EntityType.Particle - Enum in net.sourceforge.cilib.entity
Particle specific constants.
EntityType.Particle.Guide - Enum in net.sourceforge.cilib.entity
 
EntityWeighing<E extends Entity> - Class in net.sourceforge.cilib.util.selection.weighing.entity
Apply a weighing based on the Fitness of Entity instances.
EntityWeighing() - Constructor for class net.sourceforge.cilib.util.selection.weighing.entity.EntityWeighing
Create a new instance.
EntityWeighing(EntityFitness<E>) - Constructor for class net.sourceforge.cilib.util.selection.weighing.entity.EntityWeighing
Create a new instance with the provided EntityFitness strategy.
EntityWeighing(EntityWeighing) - Constructor for class net.sourceforge.cilib.util.selection.weighing.entity.EntityWeighing
Create a copy of the provided instance.
entries() - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the list of internal Entry instances.
entries() - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
entrySet() - Method in class net.sourceforge.cilib.type.types.Blackboard
Obtain a Set of key / value pairs.
EnvironmentChangeDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
This abstract class defines the interface that detection strategies have to adhere to.
EnvironmentChangeDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
EnvironmentChangeDetectionStrategy(EnvironmentChangeDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
EnvironmentChangeResponseStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
TODO: Complete this Javadoc.
EnvironmentChangeResponseStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
 
EnvironmentChangeResponseStrategy(EnvironmentChangeResponseStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
 
EOF - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
End of File.
eol - Variable in exception net.sourceforge.cilib.type.parser.ParseException
The end of line string for this machine.
EpochStrategy - Interface in net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy
Define the epoch strategy to be used within a Neural Network.
EPSILON - Static variable in class net.sourceforge.cilib.math.Maths
 
epsilon - Variable in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
equals(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
equals(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
 
equals(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
It doesn;t make sense to compare the meta data of the entity.
equals(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
equals(Object) - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
equals(Object) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. 
equals(Object) - Method in class net.sourceforge.cilib.container.Pair
equals(Object) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
equals(Object) - Method in class net.sourceforge.cilib.ec.Individual
It doesn;t make sense to compare the meta data of the entity.
equals(Object) - Method in class net.sourceforge.cilib.entity.AbstractEntity
It doesn;t make sense to compare the meta data of the entity.
equals(Object) - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
equals(Object) - Method in class net.sourceforge.cilib.entity.Harmony
It doesn;t make sense to compare the meta data of the entity.
equals(Object) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
equals(Object) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
equals(Object) - Method in interface net.sourceforge.cilib.entity.Topology
equals(Object) - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
 
equals(Object) - Method in class net.sourceforge.cilib.games.items.GridLocation
Determine if this Vector is equal to the provided object.
equals(Object) - Method in interface net.sourceforge.cilib.games.items.ItemLocation
 
equals(Object) - Method in class net.sourceforge.cilib.problem.InferiorFitness
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.problem.MOFitness
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.problem.OptimisationSolution
 
equals(Object) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
equals(Object) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
It doesn;t make sense to compare the meta data of the entity.
equals(Object) - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
equals(Object) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
equals(Object) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
 
equals(Object) - Method in class net.sourceforge.cilib.type.types.Bit
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Blackboard
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Bounds
 
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.Set
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
 
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.container.Vector
Determine if this Vector is equal to the provided object.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Int
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Long
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Numeric
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.Real
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.type.types.StringType
Compare the specified object with this type for equality.
equals(Object) - Method in interface net.sourceforge.cilib.type.types.Type
Compare the specified object with this type for equality.
equals(Object) - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Determine if the provided obj is equal to the currently decorated element within this Entry.
error(Element, String) - Method in class net.sourceforge.cilib.xml.XMLObjectFactory
 
errorDg - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
ErrorDg - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
ErrorDg() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
ErrorDg(ErrorDg) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
ErrorDg(EvaluationMediator) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
errorDt - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
ErrorDt - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: complete this javadoc.
ErrorDt() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
ErrorDt(ErrorDt) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
ErrorDt(EvaluationMediator) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
errorDt - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
errorDv - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
ErrorDv - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
ErrorDv() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
ErrorDv(ErrorDv) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
ErrorDv(EvaluationMediator) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
ErrorSignal - Interface in net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies
 
EuclideanDistanceMeasure - Class in net.sourceforge.cilib.util
Euclidean Distance is a special case of the MinkowskiMetric with alpha = 2.
EuclideanDistanceMeasure() - Constructor for class net.sourceforge.cilib.util.EuclideanDistanceMeasure
Create an instance of the EuclideanDistanceMeasure.
EuclideanDiversityAroundGBest - Class in net.sourceforge.cilib.measurement.single
TODO: Complete this javadoc.
EuclideanDiversityAroundGBest(EuclideanDiversityAroundGBest) - Constructor for class net.sourceforge.cilib.measurement.single.EuclideanDiversityAroundGBest
 
evaluate(Numeric, Numeric) - Method in class net.sourceforge.cilib.entity.operators.mutation.AdditionMutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Numeric, double) - Method in class net.sourceforge.cilib.entity.operators.mutation.AdditionMutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, Numeric) - Method in class net.sourceforge.cilib.entity.operators.mutation.AdditionMutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, double) - Method in class net.sourceforge.cilib.entity.operators.mutation.AdditionMutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Numeric, Numeric) - Method in class net.sourceforge.cilib.entity.operators.mutation.MultiplicationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Numeric, double) - Method in class net.sourceforge.cilib.entity.operators.mutation.MultiplicationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, Numeric) - Method in class net.sourceforge.cilib.entity.operators.mutation.MultiplicationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, double) - Method in class net.sourceforge.cilib.entity.operators.mutation.MultiplicationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Numeric, Numeric) - Method in interface net.sourceforge.cilib.entity.operators.mutation.MutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Numeric, double) - Method in interface net.sourceforge.cilib.entity.operators.mutation.MutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, Numeric) - Method in interface net.sourceforge.cilib.entity.operators.mutation.MutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(double, double) - Method in interface net.sourceforge.cilib.entity.operators.mutation.MutationOperatorStrategy
Perform the evaluation based on the given parameters.
evaluate(Type) - Method in class net.sourceforge.cilib.functions.activation.ActivationFunction
Each function must provide an implementation which returns the function value at the given position.
evaluate(Number) - Method in class net.sourceforge.cilib.functions.activation.ActivationFunction
Determine the value of the ActivationFunction at the provided point.
evaluate(Type) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Each function must provide an implementation which returns the function value at the given position.
evaluate(Number) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Determine the value of the ActivationFunction at the provided point.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
This method is responsible for various things before the fitness can be returned: Arrange the patterns in the dataset to belong to its closest centroid.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.ContinuousStep
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.InvertedFunctionDecorator
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
Multiplies the argument vector, x, by the transpose of the rotation matrix stores the result in rotatedX and calls the evaluate method of the function being decorated with the rotated vector as the parameter.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f1
Evaluates the function f1(X_I) = x_1
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Evaluates the function g*h
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
Evaluates the function f(XII) = 1 + sum ( x_i - G(t))^2
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Evaluates the function h(f_1, g) = 1-sqrt(f_1/g)
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f1
Evaluates the function f1(X_I) = x_1
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Evaluates the function g*h
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_g
Evaluates the function g(XII) = 1 + sum((x_i)^2)
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Evaluates the function h(X_III, f_1, g) = 1-(f_1/g)^(H(t) + sum(x_i-H(t))^2)^(-1)
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Foxholes
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.GoldsteinPrice
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Himmelblau
Evaluate the function and return the result of the evaluation.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.HyperEllipsoid
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Michalewicz12
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction1
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction2
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction3
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction4
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction5
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.NastyBenchmark
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Neumaier3
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.NichePSOF1
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Quadric
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Quartic
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Ripple
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Salomon
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Schaffer2
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Schaffer6
Evaluate the function and return the evaluation.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Schwefel
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem1_2
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_21
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_22
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_26
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.ShekelN
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.ShekelsFoxholes
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Shir
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Shubert
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.SixHumpCamelBack
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.Step
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.AbsoluteValue
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Ackley
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Beale
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bird
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky1
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky2
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky3
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Booth
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Branin
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin4
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin6
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Colville
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Damavandi
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Easom
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Griewank
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rastrigin
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rosenbrock
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Spherical
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.UrsemF1
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.UrsemF3
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.continuous.UrsemF4
Evaluate the function with the given Vector as input.
evaluate(Type) - Method in class net.sourceforge.cilib.functions.ContinuousFunction
Each function must provide an implementation which returns the function value at the given position.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.ContinuousFunction
Evaluate the function with the given Vector as input.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
Evaluate the net.sourceforge.cilib.type.types.Vector by decoding the binary vector into a continuous vector and evaluate the results by feeding the result into the wrapped funtion.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Evaluate the fitness of the provided solution x.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.KnightsCoverage
Evaluate the function output, given the function input, x.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.LongestCommonSubsequence
 
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.discrete.Queens
Get the matrix and determine if there are any conflicts.
evaluate(Type) - Method in class net.sourceforge.cilib.functions.DiscreteFunction
Each function must provide an implementation which returns the function value at the given position.
evaluate(Vector) - Method in class net.sourceforge.cilib.functions.DiscreteFunction
Evaluate the function output, given the function input, x.
evaluate(Type) - Method in class net.sourceforge.cilib.functions.Function
Each function must provide an implementation which returns the function value at the given position.
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
evaluate(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
evaluate(NNPattern) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkTopology
 
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
evaluate(NNPattern) - Method in class net.sourceforge.cilib.neuralnetwork.generic.LayeredGenericTopology
 
evaluate(Type) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
evaluateEntity(int, int, Blackboard<Enum<?>, Type>) - Method in interface net.sourceforge.cilib.problem.coevolution.CoevolutionOptimisationProblem
This method evaluates an entity with regards to a number of groups of entities depending on the instance of the problem
evaluateEntity(int, int, Blackboard<Enum<?>, Type>) - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
This method evaluates an entity with regards to a number of groups of entities depending on the instance of the problem
evaluateMapping(Matrix<Double>) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearCompEvaluator
Implements the evaluateMapping function as required by.
evaluateMapping(Matrix<Double>) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
Implements the evaluateMapping function as required by.
evaluateMapping(Matrix<Double>) - Method in class net.sourceforge.cilib.problem.mappingproblem.KruskalEvaluator
Implements the evaluateMapping function as required by NonlinearMappingProblem.
evaluateMapping(Matrix<Double>) - Method in interface net.sourceforge.cilib.problem.mappingproblem.MappingEvaluator
Get called in order to perform an evaluation.
evaluateMovpeaks(double[]) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
evaluateState(Game<GameState>, int) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.EndGameStateEvaluator
Evaluate a given GameState for a given player ID.
evaluateState(Game<GameState>, int) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
Evaluate a given GameState for a given player ID.
evaluateState(Game<GameState>, int) - Method in interface net.sourceforge.cilib.games.agent.state.evaluation.StateEvaluator
Evaluate a given GameState for a given player ID.
evaluateState(Game<GameState>, int) - Method in class net.sourceforge.cilib.games.game.tetris.PierreDellacherieTetrisEvaluator
Evaluate a given GameState for a given player ID.
EvaluationMediator - Class in net.sourceforge.cilib.neuralnetwork.foundation
 
EvaluationMediator() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
evaluationStrategy - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
evaluator - Variable in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
execute(Particle) - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
ExpandBuff(boolean) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
expectedTokenSequences - Variable in exception net.sourceforge.cilib.type.parser.ParseException
Each entry in this array is an array of integers.
ExplorerBee - Class in net.sourceforge.cilib.boa.bee
Represents the explorer bee in the algorithm.
ExplorerBee() - Constructor for class net.sourceforge.cilib.boa.bee.ExplorerBee
Default constructor.
ExplorerBee(ExplorerBee) - Constructor for class net.sourceforge.cilib.boa.bee.ExplorerBee
Copy constructor.
exponent() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
EXPONENT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
ExponentiallyDecreasingControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to update itself in an exponentially decreasing manner.
ExponentiallyDecreasingControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.ExponentiallyDecreasingControlParameter
Create a new instance of ExponentiallyDecreasingControlParameter.
ExponentiallyDecreasingControlParameter(ExponentiallyDecreasingControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.ExponentiallyDecreasingControlParameter
Copy constructor.
ExponentiallyIncreasingControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to update itself in an exponentially increasing manner.
ExponentiallyIncreasingControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.ExponentiallyIncreasingControlParameter
Create a new instance of ExponentiallyIncreasingControlParameter.
ExponentiallyIncreasingControlParameter(ExponentiallyIncreasingControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.ExponentiallyIncreasingControlParameter
Copy constructor.
ExpressionFunction - Class in net.sourceforge.cilib.functions.continuous
A Function class that defines a function based on a predefined string which is parsed and interpreted during evaluation.
ExpressionFunction() - Constructor for class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Create a new instance of the ExpressionFunction.
ExpressionFunction(ExpressionFunction) - Constructor for class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Copy constructor.
extract(Particle) - Static method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
Deprecated. 
extract(Particle) - Static method in class net.sourceforge.cilib.pso.particle.LFDecorator
Deprecated.  

F

f(double) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearCompEvaluator
The function F.
f(double) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
The function F.
factorial(double) - Static method in class net.sourceforge.cilib.math.Maths
Generate the required factorial of the number x.
FactoryException - Exception in net.sourceforge.cilib.xml
 
FactoryException() - Constructor for exception net.sourceforge.cilib.xml.FactoryException
Creates a new instance of FactoryException without detail message.
FactoryException(String) - Constructor for exception net.sourceforge.cilib.xml.FactoryException
Constructs an instance of FactoryException with the specified detail message.
FanInWeightInitialiser - Class in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
TODO: Complete this javadoc.
FanInWeightInitialiser() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.FanInWeightInitialiser
 
FASTADataSetBuilder - Class in net.sourceforge.cilib.bioinf.sequencealignment
Builds the input data set that gets fed as sequences to be aligned.
FASTADataSetBuilder() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
Create an instance of FASTADataSetBuilder.
FASTADataSetBuilder(FASTADataSetBuilder) - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
Copy constructor.
FDA1_f1 - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
This function is the f1 function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
FDA1_f1() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f1
Default Contructor
FDA1_f1(FDA1_f1) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f1
copy constructor
FDA1_f2 - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
This function is the g*h function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
FDA1_f2() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Default constructor
FDA1_f2(FDA1_f2) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Copy constructor
FDA1_g - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
This function is the g function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
FDA1_g() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
Default constructor
FDA1_g(FDA1_g) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
Copy constructor
FDA1_h - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
This function is the h function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
FDA1_h() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Default constructor
FDA1_h(FDA1_h) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Copy constructor
FDA2_f1 - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
This function is the f1 function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.
FDA2_f1() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f1
Default Contructor
FDA2_f1(FDA2_f1) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f1
copy constructor
FDA2_f2 - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
This function is the g*h function of the FDA2 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
FDA2_f2() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Default constructor
FDA2_f2(FDA2_f2) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
copy constructor
FDA2_g - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
This function is the g function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.
FDA2_g() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_g
Default Constructor
FDA2_g(FDA2_g) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_g
copy constructor
FDA2_h - Class in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
This function is the h function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.
FDA2_h() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Default constructor
FDA2_h(FDA2_h) - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
copy constructor
fdrMaximizerAcceleration - Variable in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
 
FDRVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
Implementation of the FDR-PSO velocity update equation.
FDRVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
 
FDRVelocityUpdateStrategy(FDRVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
 
FEP - Class in net.sourceforge.cilib.ec
Deprecated. 
FEP() - Constructor for class net.sourceforge.cilib.ec.FEP
Deprecated.  
FFNN_GD_TrainingStrategy - Class in net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies
 
FFNN_GD_TrainingStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
FFNNEvaluationMediator - Class in net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators
Deprecated. 
FFNNEvaluationMediator() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
FFNNgenericTopologyBuilder - Class in net.sourceforge.cilib.neuralnetwork.generic.topologybuilders
 
FFNNgenericTopologyBuilder() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
 
FFNNTopology - Class in net.sourceforge.cilib.neuralnetwork.basicFFNN
This is a basic Feedforward Neural network implementation.
FFNNTopology(int, int, int, double, double) - Constructor for class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
FFNNTrainingStrategy - Class in net.sourceforge.cilib.neuralnetwork.basicFFNN
 
FFNNTrainingStrategy(FFNNTopology) - Constructor for class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
file - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
file - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
fileName - Variable in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
FillBuff() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
finaliseError() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
finaliseError() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
finaliseError() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
finaliseErrors(NNError[]) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
FIPSVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
 
FIPSVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
FIPSVelocityUpdate(FIPSVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
first() - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the first result from the current selection.
first(int) - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the frist number of elements from the current selection.
first() - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
first(int) - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
fitness - Variable in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
Fitness - Class in net.sourceforge.cilib.measurement.single
 
Fitness() - Constructor for class net.sourceforge.cilib.measurement.single.Fitness
Creates a new instance of Fitness.
Fitness(Fitness) - Constructor for class net.sourceforge.cilib.measurement.single.Fitness
Copy constructor.
Fitness - Interface in net.sourceforge.cilib.problem
This interface is an abstraction for the fitness of a solution to an optimisation problem.
fitnessCalculation - Variable in class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
FitnessCalculationStrategy - Class in net.sourceforge.cilib.coevolution.score.fitnesscalculation
 
FitnessCalculationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.FitnessCalculationStrategy
 
FitnessCalculationStrategy(FitnessCalculationStrategy) - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.FitnessCalculationStrategy
 
FitnessCalculator<T> - Interface in net.sourceforge.cilib.util.calculator
Perform the calculation of the fitness for the given Entity, decoupling the Entity from the Problem.
fitnessEvaluations - Variable in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
 
FitnessEvaluations - Class in net.sourceforge.cilib.measurement.single
 
FitnessEvaluations() - Constructor for class net.sourceforge.cilib.measurement.single.FitnessEvaluations
Creates a new instance of FitnessEvaluations.
FitnessEvaluations(FitnessEvaluations) - Constructor for class net.sourceforge.cilib.measurement.single.FitnessEvaluations
Copy constructor.
fitnessEvaluations - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
fitnessEvaluations - Variable in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
 
fitnessSharingStrategy - Variable in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
FitnessSharingStrategy - Class in net.sourceforge.cilib.coevolution
 
FitnessSharingStrategy() - Constructor for class net.sourceforge.cilib.coevolution.FitnessSharingStrategy
 
FitnessUpdateStrategy - Interface in net.sourceforge.cilib.cooperative.fitnessupdatestrategies
Update the Fitness for the current Entity based on the provided OptimisationProblem.
fitnessUpdateStrategy - Variable in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
FitShapeInGridTopDown() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Fit the current shape in the current grid from its current position moving down untill it either collides or is at the bottowm of the grid
FixedListSeedingStrategy - Class in net.sourceforge.cilib.games.random
This class is similar to the ListSeedingStrategy but differs in the following way.
FixedListSeedingStrategy() - Constructor for class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
 
FixedListSeedingStrategy(FixedListSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
 
FixedSeedStrategy - Class in net.sourceforge.cilib.games.random
This seeding strategy always uses the same seed.
FixedSeedStrategy() - Constructor for class net.sourceforge.cilib.games.random.FixedSeedStrategy
 
FixedSeedStrategy(GameSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.FixedSeedStrategy
 
FixedWeighing<E> - Class in net.sourceforge.cilib.util.selection.weighing
Apply a fixed weighing to a list of elements.
FixedWeighing() - Constructor for class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Create a new instance with the default weighing value of 0.0.
FixedWeighing(double) - Constructor for class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Create a new instance with the provided value for weighing.
FixedWeighing(FixedWeighing<E>) - Constructor for class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Create a copy of the provided instance.
flip(double) - Static method in class net.sourceforge.cilib.math.Maths
Determine if a "flip" would occur given the provided probability value.
flush() - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
Foxholes - Class in net.sourceforge.cilib.functions.continuous
This is an implementation of the Foxholes function.
Foxholes() - Constructor for class net.sourceforge.cilib.functions.continuous.Foxholes
Create an instance of Foxholes.
freePeaks() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
from(List<? extends T>) - Static method in class net.sourceforge.cilib.util.selection.Selection
Create a selection that will operate on the provided collection.
Function - Class in net.sourceforge.cilib.functions
All functions should inherit from Function.
Function() - Constructor for class net.sourceforge.cilib.functions.Function
Create a new instance of Function.
Function(Function) - Constructor for class net.sourceforge.cilib.functions.Function
Create a copy of the provided instance.
function - Variable in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
 
FunctionDimensionMapping - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
FunctionDimensionMapping() - Constructor for class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
Create an instance of FunctionDimensionMapping.
FunctionDimensionMappingProblem - Class in net.sourceforge.cilib.problem.mappingproblem
TODO: Complete this javadoc.
FunctionDimensionMappingProblem() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
FunctionDimensionMappingProblem(FunctionDimensionMappingProblem) - Constructor for class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
FunctionLearningProblem - Class in net.sourceforge.cilib.problem
 
FunctionLearningProblem() - Constructor for class net.sourceforge.cilib.problem.FunctionLearningProblem
 
FunctionLearningProblem(Function, int, double, NeuralNetworkProblem) - Constructor for class net.sourceforge.cilib.problem.FunctionLearningProblem
 
FunctionLearningProblem(FunctionLearningProblem) - Constructor for class net.sourceforge.cilib.problem.FunctionLearningProblem
 
FunctionMaximisationProblem - Class in net.sourceforge.cilib.problem
 
FunctionMaximisationProblem() - Constructor for class net.sourceforge.cilib.problem.FunctionMaximisationProblem
 
FunctionMaximisationProblem(FunctionMaximisationProblem) - Constructor for class net.sourceforge.cilib.problem.FunctionMaximisationProblem
 
FunctionMinimisationProblem - Class in net.sourceforge.cilib.problem
An implementation of OptimisationProblemAdapter that can be used to find the minimum of any Function.
FunctionMinimisationProblem() - Constructor for class net.sourceforge.cilib.problem.FunctionMinimisationProblem
 
FunctionMinimisationProblem(FunctionMinimisationProblem) - Constructor for class net.sourceforge.cilib.problem.FunctionMinimisationProblem
 
FunctionOptimisationError - Class in net.sourceforge.cilib.measurement.single
 
FunctionOptimisationError() - Constructor for class net.sourceforge.cilib.measurement.single.FunctionOptimisationError
Creates a new instance of FunctionMinimisationError.
FunctionOptimisationError(FunctionOptimisationError) - Constructor for class net.sourceforge.cilib.measurement.single.FunctionOptimisationError
 
FunctionOptimisationProblem - Class in net.sourceforge.cilib.problem
This class serves as a base class for function optimisation problems using a Function.
FunctionOptimisationProblem() - Constructor for class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Creates a new instance of FunctionOptimisationProblem with null function.
FunctionOptimisationProblem(FunctionOptimisationProblem) - Constructor for class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Create a copy of the provided instance.

G

Game<E extends GameState> - Class in net.sourceforge.cilib.games.game
 
Game() - Constructor for class net.sourceforge.cilib.games.game.Game
Default constructor
Game(Game<E>) - Constructor for class net.sourceforge.cilib.games.game.Game
Copy constructor
Game(Game<E>, E) - Constructor for class net.sourceforge.cilib.games.game.Game
Copy constructor, copy the given Game object but use the given GameState obect.
game - Variable in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
 
GameEnum - Interface in net.sourceforge.cilib.games.items
This interface should be implimented by all GameToken Enum's so that a textual description of each instance can easily be accessed
GameItem - Class in net.sourceforge.cilib.games.items
Any object that exists in the game.
GameItem() - Constructor for class net.sourceforge.cilib.games.items.GameItem
 
GameItem(Enum<?>) - Constructor for class net.sourceforge.cilib.games.items.GameItem
 
GameItem(Enum<?>, ItemLocation) - Constructor for class net.sourceforge.cilib.games.items.GameItem
 
GameItem(GameItem) - Constructor for class net.sourceforge.cilib.games.items.GameItem
 
GameLearningOptimizationProblem - Class in net.sourceforge.cilib.problem.coevolution
Optimize either a single player game or a game against hand coded opponents
GameLearningOptimizationProblem() - Constructor for class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
 
GameLearningOptimizationProblem(GameLearningOptimizationProblem) - Constructor for class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
Copy constructor
gameOver() - Method in class net.sourceforge.cilib.games.game.Game
check if the game should terminate
gameOver() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
check if the game should terminate
gameOver() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
check if the game should terminate
gameOver() - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
check if the game should terminate
GameScoringStrategy - Class in net.sourceforge.cilib.games.game.scoring
 
GameScoringStrategy() - Constructor for class net.sourceforge.cilib.games.game.scoring.GameScoringStrategy
 
GameSeedingStrategy - Class in net.sourceforge.cilib.games.random
This class is used to generate random numbers for Game's.
GameSeedingStrategy() - Constructor for class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
GameSeedingStrategy(GameSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.GameSeedingStrategy
The copy constructor makes a shallow clone.
GameState - Class in net.sourceforge.cilib.games.states
 
GameState() - Constructor for class net.sourceforge.cilib.games.states.GameState
 
GameState(GameState) - Constructor for class net.sourceforge.cilib.games.states.GameState
 
GameToken - Enum in net.sourceforge.cilib.games.items
This enum defines descriptors for any game items.
GameToken.PredatorPrey - Enum in net.sourceforge.cilib.games.items
Predator Prey tokens
GameToken.Tetris - Enum in net.sourceforge.cilib.games.items
Tetris tokens
GameToken.TicTacToe - Enum in net.sourceforge.cilib.games.items
Tick Tack Toe tokens
GapFogel - Class in net.sourceforge.cilib.bioinf.sequencealignment
Method that calculates a gap score by linearly or not scale the number of gaps over all columns.
GapFogel() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.GapFogel
 
GapFourFour - Class in net.sourceforge.cilib.bioinf.sequencealignment
Method that penalises gaps.
GapFourFour() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.GapFourFour
 
GapOpeningAndExtensionPenalty - Class in net.sourceforge.cilib.bioinf.sequencealignment
Method that penalises indels as gap groups.
GapOpeningAndExtensionPenalty() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty
 
GapPenaltiesMethod - Interface in net.sourceforge.cilib.bioinf.sequencealignment
Public common interface for gap penalties methods (GapFogel, GapFourFour and GapOpeningAndExtensionPenalty).
GaussianMutationStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
 
GaussianMutationStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
GaussianMutationStrategy(GaussianMutationStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
GaussianPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
TODO: Complete this javadoc.
GaussianPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.GaussianPositionUpdateStrategy
 
GBestCenterInitialisationStrategy - Class in net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies
TODO: Complete this javadoc.
GBestCenterInitialisationStrategy() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.GBestCenterInitialisationStrategy
 
GBestTopology<E extends Entity> - Class in net.sourceforge.cilib.entity.topologies
Implementation of the gbest neighbourhood topology.
GBestTopology() - Constructor for class net.sourceforge.cilib.entity.topologies.GBestTopology
Creates a new instance of GBestTopology.
GBestTopology(GBestTopology<E>) - Constructor for class net.sourceforge.cilib.entity.topologies.GBestTopology
 
GBestTopology.IndexedIterator<T extends Entity> - Interface in net.sourceforge.cilib.entity.topologies
Interface to define the manner in which the iterator is to be constructed for Array types.
GCVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
An implementation of the Guaranteed Convergence PSO algorithm.
GCVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Create an instance of the GC Velocity Update strategy.
GCVelocityUpdateStrategy(GCVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Copy constructor.
generalisationSet - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
GeneralisedDunnIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Generalised Dunn Index.
GeneralisedDunnIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.GeneralisedDunnIndex
 
GeneralTree<E extends Comparable<? super E> & Cloneable> - Class in net.sourceforge.cilib.type.types.container
Implementation of the General Tree data structure.
GeneralTree() - Constructor for class net.sourceforge.cilib.type.types.container.GeneralTree
Create an instance of a GeneralTree with a null key value and zero subtrees.
GeneralTree(E) - Constructor for class net.sourceforge.cilib.type.types.container.GeneralTree
Create an instance of a GeneralTree with element defined as the key value and an empty set of subtrees.
GeneralTree(GeneralTree<E>) - Constructor for class net.sourceforge.cilib.type.types.container.GeneralTree
Copy constructor.
generateBitString(Vector) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
generateParseException() - Method in class net.sourceforge.cilib.type.parser.DomainParser
Generate ParseException.
generateStates(int) - Method in interface net.sourceforge.cilib.games.game.StateGame
This method generates every possible from the current state for a specific player
generateStates(int) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
This method generates every possible from the current state for a specific player
generateStates(int) - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
This method generates every possible from the current state for a specific player
generateStems(String, Boolean) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator
 
generator - Variable in class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
GenericData - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
GenericData() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Create an instance of GenericData.
GenericFunctionMeasurement - Class in net.sourceforge.cilib.measurement.single
 
GenericFunctionMeasurement() - Constructor for class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Create a new instance of GenericFunctionMeasurement.
GenericFunctionMeasurement(GenericFunctionMeasurement) - Constructor for class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Copy constructor.
GenericTopology - Class in net.sourceforge.cilib.neuralnetwork.generic
 
GenericTopology() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
GenericTopologyBuilder - Class in net.sourceforge.cilib.neuralnetwork.generic.topologybuilders
 
GenericTopologyBuilder() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
 
GenericTopologyVisitor - Interface in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
 
GeneticAlgorithmIterationStrategy - Class in net.sourceforge.cilib.ec.iterationstrategies
TODO: Complete this javadoc.
GeneticAlgorithmIterationStrategy() - Constructor for class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Create an instance of the IterationStrategy.
GeneticAlgorithmIterationStrategy(GeneticAlgorithmIterationStrategy) - Constructor for class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Copy constructor.
get() - Static method in class net.sourceforge.cilib.algorithm.Algorithm
Accessor for the top-level currently executing algorithm running in the current thread.
get(int, int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
Returns the value of a bit.
get(int) - Method in interface net.sourceforge.cilib.container.Array
Get the element at the provided index.
get(int) - Method in class net.sourceforge.cilib.container.BitArray
Return the state of the bit specified at index index.
get(int, int) - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Return the current item within the grid, located at (row, column).
get(int) - Method in class net.sourceforge.cilib.container.MultiDimensionalArray
 
get(int) - Method in class net.sourceforge.cilib.container.SortedList
get(int) - Method in class net.sourceforge.cilib.container.StandardArray
Get the element at the provided index.
get(int) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
get(int) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
get(int) - Method in interface net.sourceforge.cilib.entity.Topology
get() - Static method in class net.sourceforge.cilib.moo.archive.Archive
Static entrypoint to get to the Archive.
get(int) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
get(int) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
get(int) - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
get(int) - Method in class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
 
get(int) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
get(K) - Method in class net.sourceforge.cilib.type.types.Blackboard
Get the value associated with the provided key, null otherwise.
get(int) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Get the Type at the given index.
get(int) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Get the Type at the given index.
get(int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the Numeric at the provided index.
get() - Static method in class net.sourceforge.cilib.util.ClusteringUtils
Return the current instance of this class.
get3prime(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
get3primeBase() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
get3primeIndex() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
get5prime(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
get5primeBase() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
get5primeIndex() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
getActivationFunction() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
Get the type of NeuronFunction that is used to construct the Neural Network
getActiveOptimisationProblem() - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
getAgentDomain() - Method in class net.sourceforge.cilib.games.agent.Agent
Get the domain the agent's solution is represented by
getAgentDomain() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
Get the domain the agent's solution is represented by
getAgentDomain() - Method in class net.sourceforge.cilib.games.agent.RandomAgent
Get the domain the agent's solution is represented by
getAgentDomain() - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
Get the domain the agent's solution is represented by
getAgentMeasurements() - Method in class net.sourceforge.cilib.games.game.Game
 
getAgentScore() - Method in class net.sourceforge.cilib.games.agent.Agent
 
getAgentToken() - Method in class net.sourceforge.cilib.games.agent.Agent
 
getAlgorithmIterator() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Get an AlgorithmIterator to iterate over the current collection of PopulationBasedAlgorithms.
getAlgorithmList() - Static method in class net.sourceforge.cilib.algorithm.Algorithm
Static accessor to allow the current level of algorithm composition to be returned.
getAlignment() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
getAlignment() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
getAlignmentCreator() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Get the alignment creator.
getAlignmentCreator() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getAllStems() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator
 
getAlpha() - Method in class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
getAlpha() - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Get the value of alpha.
getAmountHistoricGames() - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.FitnessCalculationStrategy
 
getAmountSubPopulations() - Method in interface net.sourceforge.cilib.problem.coevolution.CoevolutionOptimisationProblem
this will correlate with the amount of groups of entites an individual required for evaluation
getAmountSubPopulations() - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
this will correlate with the amount of groups of entites an individual required for evaluation
getAmOutputs() - Method in class net.sourceforge.cilib.games.agent.neural.NeuralOutputInterpretationStrategy
the the number of output units that this strategy requires
getAmOutputs() - Method in class net.sourceforge.cilib.games.game.predatorprey.NeuralPredatorOutputStrategy
This strategy requires 4 outputs: The first determines movement on the x axis the second determines if that movement is left or right The third determines movement on the y axes The fourth determines if it is up or down
getAmOutputs() - Method in class net.sourceforge.cilib.games.game.predatorprey.NeuralPreyOutputStrategy
This strategy requires 5 outputs: The first determins if the prey agent will Jump 2 cells, or move to an adjacent one The second determines movement on the x axis the third determines if that movement is left or right The fourth determines movement on the y axes The fifth determines if it is up or down
getArchive() - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
getArrangedCentroids() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the structure that represents the split-up centroids after the non-associated centroids have been removed.
getArrangedClusters() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the structure that represents the seperate clusters after the empty clusters have been removed.
getAvgError() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getBeginColumn() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get token beginning column number.
getBeginLine() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get token beginning line number.
getBehavioralDomainRegistry() - Method in class net.sourceforge.cilib.functions.Function
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Returns the domain component that describes the search space of the needed behavioral characteristics of the problem.
getBehaviouralDomain() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Returns the domain component that describes the search space of the needed behavioral characteristics of the problem.
getBehaviouralDomain() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated.  
getBehaviouralDomain() - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Return the actual domain of the problem's dataset, i.e.
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
Returns the domain component that describes the search space of the needed behavioral characteristics of the problem.
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
 
getBehaviouralDomain() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getBehaviouralDomain() - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Returns the domain component that describes the search space of the needed behavioral characteristics of the problem.
getBehaviouralParameters() - Method in class net.sourceforge.cilib.ec.Individual
Return the Entity associated behavioural parameters.
getBehaviouralParameters() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getBehaviouralParameters() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
getBestEntity() - Method in class net.sourceforge.cilib.entity.AbstractTopology
Obtain the most fit Entity within the Topology.
getBestEntity(Comparator<? super E>) - Method in class net.sourceforge.cilib.entity.AbstractTopology
Obtain the Entity within the current Topology, based on the provided Comparator instance.
getBestEntity() - Method in interface net.sourceforge.cilib.entity.Topology
Obtain the current best entity within the Topology.
getBestEntity(Comparator<? super E>) - Method in interface net.sourceforge.cilib.entity.Topology
Obtain the current best entity within the Topology, based on the provided Comparator.
getBestFitness() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Return the best fitness associated with this Entity, provided a best fitness is defined on the Entity.
getBestFitness() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Return the best fitness associated with this Entity, provided a best fitness is defined on the Entity.
getBestFitness() - Method in interface net.sourceforge.cilib.entity.Entity
Return the best fitness associated with this Entity, provided a best fitness is defined on the Entity.
getBestFitness() - Method in interface net.sourceforge.cilib.entity.Particle
Get the best Fitness for the particle.
getBestFitness() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Return the best fitness associated with this Entity, provided a best fitness is defined on the Entity.
getBestFitness() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getBestFitness() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Return the best fitness associated with this Entity, provided a best fitness is defined on the Entity.
getBestPosition() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Get the best position of the Particle.
getBestPosition() - Method in interface net.sourceforge.cilib.entity.Particle
Get the best position of the Particle.
getBestPosition() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the best position of the Particle.
getBestPosition() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getBestPosition() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Get the best position of the Particle.
getBestSolution() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
getBestSolution() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.boa.ABC
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
This doesnt really make sense since in co-evolution you have a best solution for each population
getBestSolution() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getBestSolution() - Method in class net.sourceforge.cilib.ec.EC
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.hs.HS
Get the best current solution.
getBestSolution() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getBestSolution() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
getBestSolution() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
getBestSolution() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
getBestSolution() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
getBestSolution() - Method in class net.sourceforge.cilib.pso.PSO
Get the best current solution.
getBetweenClusterSeperation(int, int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
getBinomial(double, double, double) - Static method in class net.sourceforge.cilib.math.random.DiscreteRandomNumber
Get the value of the Binomial distribution at point x, given the values for p and n.
getBit() - Method in class net.sourceforge.cilib.type.types.Bit
Return the state of the curent Bit object.
getBit(int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the boolean value of the Numeric at position index.
getBit() - Method in class net.sourceforge.cilib.type.types.Int
Get the value of this Numeric.
getBit() - Method in class net.sourceforge.cilib.type.types.Long
Get the value of this Numeric.
getBit() - Method in class net.sourceforge.cilib.type.types.Numeric
Get the value of this Numeric.
getBit() - Method in class net.sourceforge.cilib.type.types.Real
Get the value of this Numeric.
getBitsPerDimension() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getBlock(int, int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
 
getBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get a list of all the TetrisBlocks for this shape
getBoardHeight() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
getBoardSize() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
getBoardSize() - Method in class net.sourceforge.cilib.functions.discrete.Queens
 
getBoardWidth() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
getBottomBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
 
getBottomMostBlock() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get the bottom most block in this shape
getBottomMostBlock(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Return the lowest block in a specific column
getBoundaryConstraint() - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Get the currently associated BoundaryConstraint.
getBounds() - Method in interface net.sourceforge.cilib.type.types.BoundedType
 
getBounds() - Method in class net.sourceforge.cilib.type.types.Numeric
 
getBuiltRepresenation() - Method in interface net.sourceforge.cilib.type.DomainRegistry
Get the instance of the built representation for this domain string.
getBuiltRepresenation() - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Get the instance of the built representation for this domain string.
getCachedDistance(int, int) - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Retrieve the cached distance between the given patterns.
getCachedDistance(int, int) - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getCandidateSetIterator() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getCandidateSetIterator() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get an Iterator for the candidate set.
getCandidateSetSize() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getCandidateSetSize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get the size of the candidate set.
getCandidateSolution() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
getCandidateSolution() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Get the value of the CandidateSolution maintained by this Entity.
getCandidateSolution() - Method in interface net.sourceforge.cilib.entity.CandidateSolution
Get the contents of the CandidateSoltion.
getCandidateSolution() - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Get the associated candidate solution representation that the current Entity represents.
getCandidateSolution() - Method in interface net.sourceforge.cilib.entity.Entity
Get the candidate solution of the entity.
getCandidateSolution() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getCapacity() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getCapacity() - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
 
getCauchy() - Method in class net.sourceforge.cilib.math.random.RandomNumber
Convenience method to obtain a Cauchy number.
getCauchy(double, double) - Method in class net.sourceforge.cilib.math.random.RandomNumber
Return a random number sampled from the Cauchy distribution.
getCenter(int) - Method in interface net.sourceforge.cilib.functions.clustering.clustercenterstrategies.ClusterCenterStrategy
Sub-classes should implement this method to return the desired center of cluster i.
getCenter(int) - Method in class net.sourceforge.cilib.functions.clustering.clustercenterstrategies.ClusterCentroidStrategy
In this case, we are interested in the centroid of the cluster.
getCenter(int) - Method in class net.sourceforge.cilib.functions.clustering.clustercenterstrategies.ClusterMeanStrategy
In this case, we are interested in the mean of the cluster.
getCenter() - Method in class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.CenterInitialisationStrategy
Get the population center.
getCenter() - Method in class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.GBestCenterInitialisationStrategy
 
getCenter() - Method in class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.SpatialCenterInitialisationStrategy
 
getCentroidsInitialisationStrategy() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Get the centroid initialisation strategy.
getChangeFrequency() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Get the current change frequency.
getChangeStrategy() - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Get the current problem change strategy.
getCharge() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
getChargedParticleInitialisationStrategy() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
getChargedRatio() - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
getChargeMagnitude() - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
getCharRepresentation() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Get the character representation of the current RNAConformation.
getClone() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.algorithm.AlgorithmListener
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.algorithm.population.IterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.KnowledgeTransferStrategy
 
getClone() - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
getClone() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
getClone() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.Efn2RNAFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.HydrogenBondFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.MethewsFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAAccuracyMeasurement
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.SimpleRNAFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer
 
getClone() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
getClone() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getClone() - Method in class net.sourceforge.cilib.boa.ABC
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.boa.bee.ExplorerBee
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.boa.bee.OnlookerBee
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.boa.bee.WorkerBee
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in interface net.sourceforge.cilib.boa.positionupdatestrategies.BeePositionUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.boa.positionupdatestrategies.VisualPositionUpdateStategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.clustering.kmeans.DataSetBasedCentroidsInitialisationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.clustering.kmeans.RandomCentroidsInitialisationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.CoevolutionIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.CoevolutionSynchronousIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
getClone() - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.competitors.Competitor
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.FitnessSharingStrategy
 
getClone() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.AveFitnessCalculationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.PercentageWonFitnessCalculationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.TotalFitnessCalculationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.OpponentPoolSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.SelectAllOpponentSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.SelectAllSolutionsPoolSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.selection.SelectpBestSolutionsPoolSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.coevolution.StandardFitnessSharingStrategy
 
getClone() - Method in class net.sourceforge.cilib.container.BitArray
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.container.Pair
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.container.SortedList
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in interface net.sourceforge.cilib.controlparameter.ControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyDecreasingControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyIncreasingControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.LinearDecreasingControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.LinearIncreasingControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Clone the current object such that a comparison of the clone and original object will yield two separate, but duplicate objects.
getClone() - Method in interface net.sourceforge.cilib.cooperative.algorithmiterators.AlgorithmIterator
 
getClone() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Clone this list iterator and return it.
getClone() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Clone this list iterator and return it.
getClone() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
getClone() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getClone() - Method in class net.sourceforge.cilib.ec.EC
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.ec.Individual
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.ec.LognormalPhenotypeUpdateStrategy
 
getClone() - Method in interface net.sourceforge.cilib.ec.PhenotypeUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.ec.StaticPhenotypeUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.entity.AbstractTopology
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Get a clone of the current CandidateSolutionMixin.
getClone() - Method in interface net.sourceforge.cilib.entity.Entity
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.entity.Harmony
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.entity.operators.CompositeOperator
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.entity.operators.creation.CreationStrategy
 
getClone() - Method in class net.sourceforge.cilib.entity.operators.creation.RandCreationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionBinomialCrossover
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionExponentialCrossover
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.OnePointCrossoverStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.crossover.UniformCrossoverStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.mutation.UniformMutationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.entity.operators.Operator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.RandomSelectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.RouletteWheelSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.SelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.entity.Particle
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
getClone() - Method in class net.sourceforge.cilib.entity.topologies.HypercubeTopology
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.topologies.LBestTopology
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.entity.Topology
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.InterClusterDistance
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.IntraClusterDistance
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.clustering.KHarmonicMeansFunction
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.NonParametricClusteringFunction
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.QuantisationErrorFunction
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DaviesBouldinIndex
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.DunnIndex33
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.HalkidiVazirgiannisIndex
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.MaulikBandyopadhyayIndex
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.TuriIndex
 
getClone() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.VeenmanReindersBackerIndex
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.ContinuousStep
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.InvertedFunctionDecorator
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f1
return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Returns a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f1
returns a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_g
return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
return a clone
getClone() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Foxholes
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.GoldsteinPrice
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Himmelblau
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.HyperEllipsoid
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Michalewicz12
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction1
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction2
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction3
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction4
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction5
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.NastyBenchmark
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Neumaier3
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.NichePSOF1
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Quadric
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Quartic
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Ripple
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Salomon
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Schaffer2
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Schaffer6
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Schwefel
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem1_2
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_21
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_22
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_26
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.ShekelN
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.ShekelsFoxholes
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Shir
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Shubert
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.SixHumpCamelBack
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.Step
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.AbsoluteValue
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Ackley
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Beale
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bird
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky1
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky2
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky3
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Booth
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Branin
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin4
 
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin6
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Colville
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Damavandi
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Easom
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Griewank
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rastrigin
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rosenbrock
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Spherical
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF1
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF3
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF4
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.ContinuousFunction
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getClone() - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
 
getClone() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getClone() - Method in class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated.  
getClone() - Method in class net.sourceforge.cilib.functions.discrete.KnightsCoverage
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
getClone() - Method in class net.sourceforge.cilib.functions.discrete.LongestCommonSubsequence
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.functions.discrete.Queens
 
getClone() - Method in class net.sourceforge.cilib.games.agent.Agent
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.RandomAgent
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.state.traversal.MinMaxAlphaBetaTraversalStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.Game
Create a cloned copy of the current object and return it.
getClone(E) - Method in class net.sourceforge.cilib.games.game.Game
Get a clone with the given GameState This method should typically be used by the StateTraversalStrategy and Agent with regards to decision making when playing the game.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.PredPreyPositionInitializationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.RandomPredPreyInitializationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
Create a cloned copy of the current object and return it.
getClone(ListGameState) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
Get a clone with the given GameState This method should typically be used by the StateTraversalStrategy and Agent with regards to decision making when playing the game.
getClone() - Method in class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
Create a cloned copy of the current object and return it.
getClone(ListGameState) - Method in class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
Get a clone with the given GameState This method should typically be used by the StateTraversalStrategy and Agent with regards to decision making when playing the game.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.BoxShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.LineShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.LShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.RLShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.RZigZagShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.TShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.shape.ZigZagShape
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Create a cloned copy of the current object and return it.
getClone(TetrisGameState) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Get a clone with the given GameState This method should typically be used by the StateTraversalStrategy and Agent with regards to decision making when playing the game.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Create a cloned copy of the current object and return it.
getClone(GridGameState) - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Get a clone with the given GameState This method should typically be used by the StateTraversalStrategy and Agent with regards to decision making when playing the game.
getClone() - Method in class net.sourceforge.cilib.games.items.GameItem
 
getClone() - Method in class net.sourceforge.cilib.games.items.GridItem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.items.GridLocation
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.games.items.ItemLocation
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.items.PlayerItem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.measurement.AgentMeasure
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
getClone() - Method in class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.FixedSeedStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.GameSeedingStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.ListSeedingStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.random.UniqueSeedingStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.result.AbstractGameResult
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.result.DrawResult
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.result.ScoreGameResult
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.result.WinGameResult
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.states.GameState
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.states.GridGameState
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.games.states.ListGameState
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.hs.HS
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.math.random.generator.KnuthSubtractive
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.math.random.generator.MersenneTwister
Get a cloned instance of the current object.
getClone() - Method in class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
getClone() - Method in class net.sourceforge.cilib.math.random.generator.Random
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.math.random.generator.RANLUX
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.math.random.generator.Tausworthe
 
getClone() - Method in class net.sourceforge.cilib.math.random.generator.ZiffGFSR4
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.math.random.RandomNumber
 
getClone() - Method in class net.sourceforge.cilib.measurement.generic.Iterations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.generic.PercentageComplete
 
getClone() - Method in class net.sourceforge.cilib.measurement.generic.Restarts
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.generic.Time
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.measurement.Measurement
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.CompositeMeasurement
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.MultipleFitness
Deprecated. Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.MultipleSolutions
Deprecated.  
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.MultiPopulationFitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalFront
 
getClone() - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalSet
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.BestParticlePosition
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.BestPositionBoundViolations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.Diameter
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.DimensionBoundViolationsPerParticle
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.Diversity
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.EuclideanDiversityAroundGBest
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.Fitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.FitnessEvaluations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.FunctionOptimisationError
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.NormalisedDiversity
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.NumberOfClustersFormed
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.ParticleBoundViolations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.ParticlePositions
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.PbestBoundViolations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.Solution
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.measurement.single.SpatialExtent
 
getClone() - Method in class net.sourceforge.cilib.measurement.single.StoredFitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.moo.archive.solutionweighing.AntiClusterWeighing
 
getClone() - Method in interface net.sourceforge.cilib.moo.archive.solutionweighing.SolutionWeighing
 
getClone() - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
getClone() - Method in interface net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.ObjectiveAssignmentStrategy
 
getClone() - Method in class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.RandomObjectiveAssignmentStrategy
 
getClone() - Method in class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.SequentialObjectiveAssignmentStrategy
 
getClone() - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DcPatternCount
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DgPatternCount
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DtPatternCount
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DvPatternCount
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.RobelOverfittingRho
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
getClone() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getClone() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated. Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
getClone() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.BouncingBoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.problem.boundaryconstraint.BoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.ClampingBoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.PeriodicBoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.RandomBoundaryConstraint
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.ReinitialisationBoundary
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.UnconstrainedBoundary
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
 
getClone() - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.ClusterableDataSet.Pattern
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.DataSet
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
getClone() - Method in class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
getClone() - Method in class net.sourceforge.cilib.problem.DiscreteOptimisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.problem.Fitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getClone() - Method in class net.sourceforge.cilib.problem.FunctionMaximisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.FunctionMinimisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.InferiorFitness
Get the cloned instance of this object.
getClone() - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
getClone() - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
 
getClone() - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.MOFitness
 
getClone() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getClone() - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
 
getClone() - Method in interface net.sourceforge.cilib.problem.Problem
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
getClone() - Method in interface net.sourceforge.cilib.pso.dynamic.ChargedParticleInitialisationStrategy
Clone the ChargedParticleInitialisationStrategy.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
Clone the EnvironmentChangeDetectionStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.NeighbourhoodBestSentriesDetectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.PeriodicDetectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryPointsDetectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.TopologyBestSentryDetectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicParticle
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflineErrorMeasurement
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflinePerformanceMeasurement
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ArchiveReevaluationResponseStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.CompetitiveCoevolutionParticleReevaluationResponseStrategy
Clone the EnvironmentChangeResponseStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
Clone the EnvironmentChangeResponseStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.NeighbourhoodBestSentriesReactionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ParticleReevaluationResponseStrategy
Deprecated.  
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.iterationstrategies.ASynchronousIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.iterationstrategies.SynchronousIterationStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.DNGuideSelectionStrategy
 
getClone() - Method in interface net.sourceforge.cilib.pso.moo.guideselectionstrategies.GuideSelectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.NBestGuideSelectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.PBestGuideSelectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideupdatestrategies.DominantGuideUpdateStrategy
 
getClone() - Method in interface net.sourceforge.cilib.pso.moo.guideupdatestrategies.GuideUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.moo.guideupdatestrategies.StandardGuideUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.pso.particle.CoherenceParticle
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.DataSetBasedPositionInitialisationStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
getClone() - Method in interface net.sourceforge.cilib.pso.particle.initialisation.PositionInitialisationStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomInitialVelocityStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomizedPositionInitialisationStrategy
Deprecated.  
getClone() - Method in interface net.sourceforge.cilib.pso.particle.initialisation.VelocityInitialisationStrategy
Clone the VeclocityInitialisationStrategy.
getClone() - Method in class net.sourceforge.cilib.pso.particle.initialisation.ZeroInitialVelocityStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getClone() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Make a clone of the Entity the exact semantics of the clone method will be defined by the classes that implements this interface.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BareBonesPositionUpdateStrategy
Deprecated. Create a clone of this BareBonesPositionUpdateStrategy.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
Clone the stategy by creating a new object with the same contents and values as the current object.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BoundedPersonalBestUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.DEPositionUpdateStrategy
Clone the stategy by creating a new object with the same contents and values as the current object.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.GaussianPositionUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.IterationNeighbourhoodBestUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.LinearPositionUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.MemoryNeighbourhoodBestUpdateStrategy
 
getClone() - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.NeighbourhoodBestUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.PersonalBestUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.PositionUpdateStrategy
Clone the stategy by creating a new object with the same contents and values as the current object.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPersonalBestUpdateStrategy
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPositionUpdateStrategy
Clone the stategy by creating a new object with the same contents and values as the current object.
getClone() - Method in class net.sourceforge.cilib.pso.PSO
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesExploitVelocityUpdateStrategy
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.CoherenceVelocityUpdate
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
getClone() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Clone the VelocityUpdateStrategy object.
getClone() - Method in interface net.sourceforge.cilib.pso.velocityupdatestrategies.VelocityUpdateStrategy
Clone the VelocityUpdateStrategy object.
getClone() - Method in class net.sourceforge.cilib.simulator.Simulation
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
getClone() - Method in interface net.sourceforge.cilib.stoppingcondition.StoppingCondition
 
getClone() - Method in interface net.sourceforge.cilib.type.DomainRegistry
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Bit
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Blackboard
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.Set
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
 
getClone() - Method in interface net.sourceforge.cilib.type.types.container.Tree
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.container.Vector
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Int
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Long
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Numeric
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.Real
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.type.types.StringType
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.type.types.Type
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.calculator.EntityBasedFitnessCalculator
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.util.calculator.FitnessCalculator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.calculator.PropertyBasedFitnessCalculator
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.calculator.StructuredTypeFitnessCalculator
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.util.Cloneable
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.RandomSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.RingBasedPopulationSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.util.selection.recipes.SelectionRecipe
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.weighing.entity.EntityWeighing
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Create a cloned copy of the current object and return it.
getClone() - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Create a cloned copy of the current object and return it.
getClone() - Method in interface net.sourceforge.cilib.util.selection.weighing.Weighing
Create a cloned copy of the current object and return it.
getClusterableDataSet() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the ClusterableDataSet used throughout the current clustering.
getClusteringProblem() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the ClusteringProblem used throughout the current clustering.
getCoevolutionIterationStrategy() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getCoevolutionOptimisationProblem() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getCognitive() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the cognitive component.
getCognitiveAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
getCognitiveAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Get the coginitive acceleration parameter.
getCognitiveAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Gets the ControlParameter representing the cognitive component within this VelocityUpdateStrategy.
getColumn(int) - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Get a Vector representing the column within the Matrix at the given index.
getColumn() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Deprecated.  
getColumnCount() - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Get the number of columns in the Matrix.
getComparator() - Method in class net.sourceforge.cilib.container.SortedList
Get the current Comparator instance.
getComparator() - Method in class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Get the current comparator.
getComparator() - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Get the comparator.
getComparator() - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Get the comparator for the selection.
getCompeteCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get the number of times the entity assosiated with this score board has competed.
getCompeteCount(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
 
getCompetitor(int, int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
getCompetitor(int) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Return the Competitor at the specified index in the list
getCompetitorGroup() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
 
getCompetitorsFromSubList(int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
get one entry from each list at index
getComplimentaryNucleotide(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
getConflictingStems() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
getCongnitiveRandomGenerator() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
Return the random number generator for the cognitive component.
getContext() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getContribution() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Returns contribution to the solution for the co-operative optimisation algorithm.
getContribution() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Returns contribution to the solution for the co-operative optimisation algorithm.
getContribution() - Method in interface net.sourceforge.cilib.cooperative.ParticipatingAlgorithm
Returns contribution to the solution for the co-operative optimisation algorithm.
getContribution() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getContribution() - Method in class net.sourceforge.cilib.ec.EC
Returns contribution to the solution for the co-operative optimisation algorithm.
getContribution() - Method in class net.sourceforge.cilib.pso.PSO
 
getContributionFitness() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Returns the fitness of contribution to the solution.
getContributionFitness() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Returns the fitness of contribution to the solution.
getContributionFitness() - Method in interface net.sourceforge.cilib.cooperative.ParticipatingAlgorithm
Returns the fitness of contribution to the solution.
getContributionFitness() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getContributionFitness() - Method in class net.sourceforge.cilib.ec.EC
Returns the fitness of contribution to the solution.
getContributionFitness() - Method in class net.sourceforge.cilib.pso.PSO
Returns the fitness of contribution to the solution.
getContributionUpdateStrategy() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getControlParameter() - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Get the currently used ControlParameterUpdateStrategy.
getCrossoverProbability() - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
getCrossoverProbability() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the cross-over probability.
getCrossoverStrategy() - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Get the CrossoverStrategy used to create offspring entities.
getCrossoverStrategy() - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Get the currently specified CrossoverStrategy.
getCurrentAlgorithm() - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
getCurrentError() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getCurrentIteration() - Method in class net.sourceforge.cilib.games.game.Game
 
getCurrentIteration() - Method in class net.sourceforge.cilib.games.states.GameState
 
getCurrentLevel() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
getCurrentOrientation() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
 
getCurrentOutput() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getCurrentPeak() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getCurrentPlayer() - Method in class net.sourceforge.cilib.games.game.Game
 
getCurrentScore() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
getCurrentSeed() - Method in class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
getCurrentShape() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
getCurrentSpeed() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
getCurrentState() - Method in class net.sourceforge.cilib.games.game.Game
returns the current state of the game, this isnt always the same as the decision state
getD() - Method in class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
 
getDancingSelectionStrategy() - Method in class net.sourceforge.cilib.boa.ABC
 
getData() - Method in class net.sourceforge.cilib.measurement.MeasurementMemento
 
getData() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getData() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getData() - Method in class net.sourceforge.cilib.problem.dataset.DataSet
Returns the data set as a byte array.
getData() - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Get the contents of the file on disk as an array of bytes.
getDataDimension() - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
Get the dimension of the data.
getDataFromSet(LocalDataSet) - Method in class net.sourceforge.cilib.problem.dataset.DataSetManager
Either parse and retrieve or just retrieve the list of patterns that represents the requested dataset.
getDataSet(int) - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
getDataSetBuilder() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Get the associated DataSetBuilder.
getDataSetBuilder() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getDataSetBuilder() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getDataSetBuilder(AssociatedPairDataSetBuilder) - Method in class net.sourceforge.cilib.problem.dataset.DataSetManager
Either initialise and retrieve or just retrieve the object that represents the requested built up dataset.
getDataSetBuilder() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getDataSetBuilder() - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Get the associated DataSetBuilder.
getDataSetBuilder() - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Get the associated DataSetBuilder.
getDataSetMean() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the mean Vector that has been cached by the ClusteringUtils.clusterableDataSet.
getDataSetVariance() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the variance (scalar) thas been cached by the ClusteringUtils.clusterableDataSet.
getDecisionState() - Method in class net.sourceforge.cilib.games.game.Game
Returns the state of the game that the agent needs to make a decision.
getDecisionState() - Method in class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
Returns the state of the game that the agent needs to make a decision.
getDefaultDeltaT() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm parameter variable deltaT.
getDegree() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Get the degree of the current Tree.
getDegree() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Get the degree of the current Tree.
getDegree() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Get the degree of the current Tree.
getDegree() - Method in interface net.sourceforge.cilib.type.types.container.Tree
Get the degree of the current Tree.
getDelta() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm parameter variable delta.
getDelta1() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm parameter variable delta1.
getDeltaT() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm parameter variable deltaT.
getDeratingFunction() - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This method gets the function that is used to modify the search space, i.e.
getDescription() - Method in interface net.sourceforge.cilib.games.items.GameEnum
Return a description of a specific Enum, this description is used in the Game's display() method to show a GameItem
getDescription() - Method in enum net.sourceforge.cilib.games.items.GameToken
Return a description of a specific Enum, this description is used in the Game's display() method to show a GameItem
getDescription() - Method in enum net.sourceforge.cilib.games.items.GameToken.PredatorPrey
Return a description of a specific Enum, this description is used in the Game's display() method to show a GameItem
getDescription() - Method in enum net.sourceforge.cilib.games.items.GameToken.Tetris
Return a description of a specific Enum, this description is used in the Game's display() method to show a GameItem
getDescription() - Method in enum net.sourceforge.cilib.games.items.GameToken.TicTacToe
Return a description of a specific Enum, this description is used in the Game's display() method to show a GameItem
getDetectionStrategy() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Get the currently defined EnvironmentChangeDetectionStrategy.
getDeviationStrategy() - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
getDiameter() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getDiameter() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
getDimension() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Returns the dimension of the Entity.
getDimension() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Returns the dimension of the Entity.
getDimension() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
getDimension() - Method in class net.sourceforge.cilib.ec.Individual
Returns the dimension of the Entity.
getDimension() - Method in interface net.sourceforge.cilib.entity.Entity
Returns the dimension of the Entity.
getDimension() - Method in class net.sourceforge.cilib.entity.Harmony
Returns the dimension of the Entity.
getDimension() - Method in interface net.sourceforge.cilib.entity.Particle
Returns the dimension of the Entity.
getDimension() - Method in class net.sourceforge.cilib.functions.Function
 
getDimension() - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
getDimension() - Method in class net.sourceforge.cilib.problem.MOFitness
 
getDimension() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Returns the dimension of the Entity.
getDimension() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getDimension() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Returns the dimension of the Entity.
getDimension() - Method in interface net.sourceforge.cilib.type.DomainRegistry
Get the dimension of the built representation of the domain string.
getDimension() - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Get the dimension of the built representation of the domain string.
getDimension() - Method in class net.sourceforge.cilib.type.types.container.Set
getDimension() - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the dimension of the Vector.
getDimension(Type) - Static method in class net.sourceforge.cilib.type.types.Types
Get the dimension of the provided Type.
getDimensions() - Method in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
getDistance(DistanceMeasure, ItemLocation) - Method in class net.sourceforge.cilib.games.items.GridLocation
Calculate the distance between this location and another one with a specified distance measure
getDistance(DistanceMeasure, ItemLocation) - Method in interface net.sourceforge.cilib.games.items.ItemLocation
Calculate the distance between this location and another one with a specified distance measure
getDistance(int, int) - Method in interface net.sourceforge.cilib.problem.mappingproblem.DistanceMetric
Gets called by CurvilinearDistEvaluator to request the distance between two vectors to be returned.
getDistance(int, int) - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearDistanceMetric
Gets called by CurvilinearDistEvaluator to request the distance between two vectors to be returned.
getDistanceBandwidth() - Method in class net.sourceforge.cilib.hs.HS
Get the distance bandwidth.
getDistanceInputVect(int, int) - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
Retrieve the distance between the two given input vectors.
getDistanceMeasure() - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
getDistanceMeasure() - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getDistanceMeasure() - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
getDistanceMeasure() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
This method will be called from ClusteringUtils.calculateDistance(Vector, Vector) which is the central point for distance calculations during a clustering.
getDistanceMetric() - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
Can be used to retrieve the DistanceMetric to use.
getDomain() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAAccuracyMeasurement
 
getDomain() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Returns the domain component that describes the search space for this problem.
getDomain() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement
 
getDomain() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer
 
getDomain() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Returns the domain component that describes the search space for this problem.
getDomain() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getDomain() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getDomain() - Method in class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated. Returns the domain component that describes the search space for this problem.
getDomain() - Method in class net.sourceforge.cilib.functions.Function
 
getDomain() - Method in class net.sourceforge.cilib.measurement.generic.Iterations
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.generic.PercentageComplete
 
getDomain() - Method in class net.sourceforge.cilib.measurement.generic.Restarts
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.generic.Time
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in interface net.sourceforge.cilib.measurement.Measurement
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.CompositeMeasurement
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.MultipleFitness
Deprecated. Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.MultipleSolutions
Deprecated.  
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.MultiPopulationFitness
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalFront
 
getDomain() - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalSet
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.BestParticlePosition
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.BestPositionBoundViolations
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.Diameter
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.DimensionBoundViolationsPerParticle
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.Diversity
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.EuclideanDiversityAroundGBest
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.Fitness
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.FitnessEvaluations
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.FunctionOptimisationError
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.NormalisedDiversity
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.NumberOfClustersFormed
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.ParticleBoundViolations
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.ParticlePositions
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.PbestBoundViolations
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.Solution
Get the domain string representing what this measurement's results will conform to.
getDomain() - Method in class net.sourceforge.cilib.measurement.single.SpatialExtent
 
getDomain() - Method in class net.sourceforge.cilib.measurement.single.StoredFitness
 
getDomain() - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DcPatternCount
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DgPatternCount
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DtPatternCount
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DvPatternCount
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.RobelOverfittingRho
 
getDomain() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getDomain() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Return the domain as used by the configured fitness function, i.e.
getDomain() - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
 
getDomain() - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
Returns the domain component that describes the search space for this problem.
getDomain() - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
getDomain() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getDomain() - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Returns the component that describes the domain of the function.
getDomain() - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
getDomain() - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
 
getDomain() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getDomain() - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Returns the domain component that describes the search space for this problem.
getDomain() - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflineErrorMeasurement
 
getDomain() - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflinePerformanceMeasurement
 
getDomainForPlayer(int) - Method in class net.sourceforge.cilib.games.game.Game
This method is used to get the specific domain for an agents solution vector
getDomainRegistry() - Method in class net.sourceforge.cilib.functions.Function
Accessor for the domain of the function.
getDomainRegistry() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Return the actual domain of the problem's dataset, i.e.
getDomainString() - Method in interface net.sourceforge.cilib.type.DomainRegistry
Get the string specifying the domain.
getDomainString() - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Get the string specifying the domain.
getDrawCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get the number of times this entity drew.
getDrawCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get the number of times the entity this score board is used for has drawn.
getDrawScores(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get all the Fitness values for games drawn by this entity for the specified round
getDrawValue() - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
getElement(int...) - Method in class net.sourceforge.cilib.container.MultiDimensionalArray
Get the element located at the provided indicies.
getElement() - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Get the element that this Entry represents.
getEmptyCellsBeforeOccupied(int, int) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Get the number of empty cells in the grid before an occupied one
getEndColumn() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get token end column number.
getEndLine() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get token end line number.
getEntityData() - Method in class net.sourceforge.cilib.coevolution.competitors.Competitor
 
getEntityFitness() - Method in class net.sourceforge.cilib.coevolution.competitors.Competitor
 
getEntityNumber() - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Get the number of entities specified to be created by the InitialisationStrategy.
getEntitySelection() - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
getEntityType() - Method in class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Get the entity that has been defined as the prototype to for the copies.
getEntityType() - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Get the current entity type.
getEntityType() - Method in class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Get the current entity type.
getEpochStrategy() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getEpsilon() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
getEpsilon() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm parameter variable epsilon.
getErodedShapeCount() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Get the number of blocks form the current AbstractShape that will be removed if the shape was to be merged at its current position
getError() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
getError(Object) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getError(Type) - Method in class net.sourceforge.cilib.problem.FunctionMaximisationProblem
Returns the error for the given solution.
getError(Type) - Method in class net.sourceforge.cilib.problem.FunctionMinimisationProblem
Returns the error for the given solution.
getError(Type) - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Returns the error (as a double for now) that the given solution has with respect to the actual optimum solution.
getError() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
getErrorDg() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getErrorDt() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getErrorDv() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getErrorThreshold() - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
 
getEvaluationStrategy() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getEvaluator() - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
getEvaluatorDomain() - Method in class net.sourceforge.cilib.games.agent.state.evaluation.EndGameStateEvaluator
If the evaluator can be optimized then the evaluator data should be in a specific domain, this function should return that domain
getEvaluatorDomain() - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
If the evaluator can be optimized then the evaluator data should be in a specific domain, this function should return that domain
getEvaluatorDomain() - Method in interface net.sourceforge.cilib.games.agent.state.evaluation.StateEvaluator
If the evaluator can be optimized then the evaluator data should be in a specific domain, this function should return that domain
getEvaluatorDomain() - Method in class net.sourceforge.cilib.games.game.tetris.PierreDellacherieTetrisEvaluator
If the evaluator can be optimized then the evaluator data should be in a specific domain, this function should return that domain
getExclusionThreshold() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getExclusionThreshold() - Method in interface net.sourceforge.cilib.functions.DynamicFunction
 
getExplorerBee() - Method in class net.sourceforge.cilib.boa.ABC
 
getExplorerBeeUpdateLimit() - Method in class net.sourceforge.cilib.boa.ABC
 
getExplorerBeeUpdateLimit() - Method in class net.sourceforge.cilib.boa.bee.ExplorerBee
 
getExpression() - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Get the defined function.
getFailureCountThreshold() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the count of failure threshold.
getFDA1_f() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Gets the f1 function that is used in the FDA1 problem
getFDA1_f_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
returns the problem used to set the f1 function
getFDA1_g() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Returns the g function that is used in the FDA1 problem
getFDA1_g() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Returns the g function that is used in the FDA1 problem
getFDA1_g_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
returns the problem used to set the g function
getFDA1_g_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
returns the problem used to set the g function
getFDA1_h() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Gets the f1 function that is used in the FDA1 problem
getFDA1_h_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
returns the problem used to set the h function
getFDA2_f() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Returns the f function that is used in the FDA2 function
getFDA2_f_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Returns the problem used to set the f function
getFDA2_g() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Returns the g function that is used in the FDA2 problem
getFDA2_g() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Returns the g function that is used in the FDA2 function
getFDA2_g_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
returns the problem used to set the g function
getFDA2_g_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Returns function used to set g function
getFDA2_h() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Gets the f1 function that is used in the FDA2 problem
getFDA2_h_problem() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
returns the problem used to set the h function
getFdrMaximizerAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
 
getFile() - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Get the name of the file that represents this dataset on disk.
getFile() - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Get the current specified filename.
getFinalAlignment() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFourFour
 
getFitness(Collection<String>, Vector, int[]) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
getFitness(Collection<String>, Vector, int[]) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
getFitness() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
getFitness() - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Returns the Entity fitness.
getFitness() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
getFitness() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Get the fitness of the CandidateSolution maintained by this Entity.
getFitness() - Method in interface net.sourceforge.cilib.entity.CandidateSolution
Obtain the Fitness of the current CandidateSolution.
getFitness() - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Obtain the Fitness of the current CandidateSolution.
getFitness() - Method in interface net.sourceforge.cilib.entity.Entity
Returns the Entity fitness.
getFitness() - Method in interface net.sourceforge.cilib.entity.Particle
Returns the Entity fitness.
getFitness(Type, boolean) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getFitness(int) - Method in class net.sourceforge.cilib.problem.MOFitness
 
getFitness(Type[], boolean) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getFitness(Type, boolean) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getFitness(int, Type, boolean) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getFitness(Type, boolean) - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Returns the fitness of a potential solution to this problem.
getFitness(Type, boolean) - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Returns the fitness of a potential solution to this problem.
getFitness() - Method in class net.sourceforge.cilib.problem.OptimisationSolution
Returns the fitness of this solution according to OptimisationProblem.getFitness(Type, boolean).
getFitness() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getFitness(Entity, boolean) - Method in class net.sourceforge.cilib.util.calculator.EntityBasedFitnessCalculator
Get the fitness, given the position.
getFitness(T, boolean) - Method in interface net.sourceforge.cilib.util.calculator.FitnessCalculator
Get the fitness, given the position.
getFitness(Entity, boolean) - Method in class net.sourceforge.cilib.util.calculator.PropertyBasedFitnessCalculator
Get the fitness, given the position.
getFitness(T, boolean) - Method in class net.sourceforge.cilib.util.calculator.StructuredTypeFitnessCalculator
Get the fitness, given the position.
getFitness(E) - Method in class net.sourceforge.cilib.util.selection.weighing.entity.CurrentFitness
Obtain the Fitness of the provided entity.
getFitness(E) - Method in interface net.sourceforge.cilib.util.selection.weighing.entity.EntityFitness
Obtain the Fitness of the provided entity.
getFitness(SocialEntity) - Method in class net.sourceforge.cilib.util.selection.weighing.entity.SocialBestFitness
Obtain the Fitness of the provided entity.
getFitnessCalc() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
 
getFitnessCalculator() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
 
getFitnessCalculator() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Get the current FitnessCalculator for the current Entity.
getFitnessCalculator() - Method in interface net.sourceforge.cilib.entity.Entity
Get the current FitnessCalculator for the current Entity.
getFitnessDeviation() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
getFitnessEvaluations() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getFitnessEvaluations() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getFitnessEvaluations() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
getFitnessEvaluations() - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Returns the number of times the underlying fitness function has been evaluated.
getFitnessEvaluations() - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Returns the number of times the underlying fitness function has been evaluated.
getFitnessSharingStrategy() - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
getFitnessUpdateStrategy() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getForageLimit() - Method in class net.sourceforge.cilib.boa.ABC
 
getForageLimit() - Method in class net.sourceforge.cilib.boa.bee.WorkerBee
Get the forage limit.
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.InvertedFunctionDecorator
 
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
Get the function that is decorated.
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Get the decorated function contained by this instance.
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Get the decorated function.
getFunction() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
 
getFunction() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getFunction() - Method in class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Get the set function.
getFunction() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getFunction() - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Accessor for the function that is to be optimised.
getFunction() - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
getGame() - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
 
getGameResult() - Method in class net.sourceforge.cilib.games.game.Game
Get the result of the game (Win/Lose/Draw)
getGameResult() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
Get the result of the game (Win/Lose/Draw)
getGameResult() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Get the result of the game (Win/Lose/Draw)
getGameResult() - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Get the result of the game (Win/Lose/Draw)
getGapPenaltyMethod() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Get the current gap penelization method.
getGapPenaltyMethod() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getGaussian() - Method in class net.sourceforge.cilib.math.random.RandomNumber
Return a random number from the Guassian distribution with a mean of 0.0 and a deviation of 1.0.
getGaussian(double, double) - Method in class net.sourceforge.cilib.math.random.RandomNumber
Return a random number with the mean of mean and a deviation of deviation.
getGeneralisationSetIterator() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getGeneralisationSetIterator() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get an Iterator for the generalisation set.
getGeneralisationSetSize() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getGeneralisationSetSize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get the size of the generalisation set.
getGenerator() - Method in class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
getGlobalGuideSelectionStrategy() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
getGlobalGuideUpdateStrategy() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
getGradient(Number) - Method in class net.sourceforge.cilib.functions.activation.ActivationFunction
Determine the gradient of the ActivationFunction at the given point.
getGradient(Vector) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Obtain the gradient Vector for the provided input Vector.
getGradient(Number) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Determine the gradient of the ActivationFunction at the given point.
getGradient(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rastrigin
Obtain the gradient Vector for the provided input Vector.
getGradient(Vector) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Spherical
Obtain the gradient Vector for the provided input Vector.
getGradient(Vector) - Method in interface net.sourceforge.cilib.functions.Differentiable
Obtain the gradient Vector for the provided input Vector.
getGradient(Vector) - Method in class net.sourceforge.cilib.problem.GradientFunctionMinimisationProblem
Returns the gradient of the optimisation problem at the given position.
getGradient(Vector) - Method in interface net.sourceforge.cilib.problem.GradientOptimisationProblem
Returns the gradient of the optimisation problem at the given position.
getGradient() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the gradient of the particle.
getGradient(Vector) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
Returns the gradient of the problem function at the given position.
getGradientEvaluations() - Method in interface net.sourceforge.cilib.algorithm.GradientOptimisationAlgorithm
Get the number of evaluations that have been performed to determine the gradient.
getGradientEvaluations() - Method in class net.sourceforge.cilib.pso.LFPSO
Returns the number of times the gradient of the function was evaluated.
getGradientOptimisationProblem() - Method in interface net.sourceforge.cilib.algorithm.GradientOptimisationAlgorithm
Accessor for the optimisation problem to be solved.
getGradientOptimisationProblem() - Method in class net.sourceforge.cilib.pso.LFPSO
 
getGridHeight() - Method in class net.sourceforge.cilib.games.states.GridGameState
 
getGridWidth() - Method in class net.sourceforge.cilib.games.states.GridGameState
 
getHarmonyMemoryConsideringRate() - Method in class net.sourceforge.cilib.hs.HS
Get the considering rate for the harmony memory.
getHarmonyMemorySize() - Method in class net.sourceforge.cilib.hs.HS
Get the size of the harmony memory.
getHasMemory() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
 
getHeight() - Method in class net.sourceforge.cilib.games.game.GridGame
 
getHeight() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
getHiddenNodesCount() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
getHigherDimensionDistanceMatrix() - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
 
getHighScore() - Method in class net.sourceforge.cilib.games.result.ScoreGameResult
 
getHorizontalReflection() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Get the horizonal reflection.
getHorizontalScale() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Get the horizontal scale value.
getHorizontalShift() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Get the horizontal shift (X-axis) associated with this function.
getI() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable i.
getId() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
getId() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Get the identifier associated with the Entity instance.
getId() - Method in interface net.sourceforge.cilib.entity.Entity
Get the identifier associated with the Entity instance.
getId() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
getId() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Get the id associated with this Topology, if an id is defined.
getId() - Method in interface net.sourceforge.cilib.entity.Topology
Get the id associated with this Topology, if an id is defined.
getId() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getIdentifier() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Get the identifier that uniquely identifies this constructed/combined/built dataset.
GetImage() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get token literal value.
getIndex() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
getIndex() - Method in interface net.sourceforge.cilib.entity.topologies.GBestTopology.IndexedIterator
 
getInertiaWeight() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Get the ControlParameter representing the inerti weight of the VelocityUpdateStrategy.
getInitialisationStrategy() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
 
getInitialisationStrategy() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Get the current PopulationInitialisationStrategy.
getInitialisationStrategy() - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Get the currently set PopulationInitialisationStrategy.
getInitializationStrategy() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
getInitialPosition(OptimisationProblem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAInitialiser
Get the initial position for the Entity, based on the provided Problem.
getInitialVelocity(OptimisationProblem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAInitialiser
Get the initial velocity represented as a type.
getInput() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
getInput() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
getInput() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getInputDim() - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
Gets the value of M, the input dimension.
getInputLength() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
getInputLength() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
getInputStream() - Method in class net.sourceforge.cilib.problem.dataset.DataSet
Returns the data set as an input stream.
getInputStream() - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Get the contents of the file on disk as an InputStream.
getInputWeights() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getInstance() - Static method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
getInstance() - Static method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
 
getInstance() - Static method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator
 
getInstance() - Static method in class net.sourceforge.cilib.problem.dataset.DataSetManager
 
getInt(int) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
getInt() - Method in class net.sourceforge.cilib.type.types.Bit
Get the integer representation of the current Bit object.
getInt(int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the int value of the Numeric at position index.
getInt() - Method in class net.sourceforge.cilib.type.types.Int
Get the value of this Numeric.
getInt() - Method in class net.sourceforge.cilib.type.types.Long
Get the value of this Numeric.
getInt() - Method in class net.sourceforge.cilib.type.types.Numeric
Get the value of this Numeric.
getInt() - Method in class net.sourceforge.cilib.type.types.Real
Get the value of this Numeric.
getIntialisationDomain() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
getItem(int, int) - Method in class net.sourceforge.cilib.games.states.GridGameState
Get an Item at a specific index in the matrix.
getItem(int) - Method in class net.sourceforge.cilib.games.states.ListGameState
Get an item with the specified index in the list.
getItem(ItemLocation) - Method in class net.sourceforge.cilib.games.states.ListGameState
Get an item that matches a given ItemLocation
getItem(Enum) - Method in class net.sourceforge.cilib.games.states.ListGameState
Returns first item that contains specified token
getItemToken() - Method in class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
 
getIterations() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Returns the number of iterations that have been performed by the algorihtm.
getIterationsModulus() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
getIterationStrategy() - Method in class net.sourceforge.cilib.ec.EC
Get the IterationStrategy for the current EC.
getIterationStrategy() - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
getIterationStrategy() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Get the current IterationStrategy.
getIterationStrategy() - Method in class net.sourceforge.cilib.pso.PSO
Get the IterationStrategy of the PSO algorithm.
getJ() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable j.
getKappa() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Get the Kappa control parameter.
getKey() - Method in class net.sourceforge.cilib.container.Pair
 
getKey() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Get the key value maintained by this Tree.
getKey() - Method in interface net.sourceforge.cilib.type.types.container.Tree
Get the key value maintained by this Tree.
getKnowConf() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
getKnowledgeTransferStrategy() - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
getKnownStructure() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
getLayer(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
getLayerIterator(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
getLeftBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
 
getLeftMostBlock() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get the left most block in this shape
getLeftMostBlock(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get the left most block in this shape for the given row
getLength() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
getLine() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Deprecated.  
getLocalGuideSelectionStrategy() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
getLocalGuideUpdateStrategy() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
getLocation() - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
getLocation() - Method in class net.sourceforge.cilib.games.items.GameItem
 
getLong() - Method in class net.sourceforge.cilib.type.types.Long
 
getLongestString() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
getLongestString() - Method in class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
Get the length of the longest string contained in the processed DataSet objects.
getLoopStatus() - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearDistanceMetric
Retrieves the looping status.
getLoseCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get the number of times this entity lost
getLoseCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get the number of times the entity this score board is used for has lost.
getLoseScores(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get all the Fitness values for games lost by this entity for the specified round
getLoseValue() - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
getLowerActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
Return the lowerbound for the active range of this NeuronFunction
getLowerActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
Return the lowerbound for the active range of this NeuronFunction
getLowerActiveRange() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
Return the lowerbound for the active range of this NeuronFunction
getLowerActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated. Return the lowerbound for the active range of this NeuronFunction
getLowerActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
Return the lowerbound for the active range of this NeuronFunction
getLowerBound() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Get the lower bound of the control paramter.
getLowerBound() - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
getLowerBound() - Method in class net.sourceforge.cilib.type.types.Bounds
 
getM() - Method in class net.sourceforge.cilib.functions.continuous.Michalewicz12
Get the value for M.
getM() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Get the current value of M.
getM() - Method in class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
 
getM() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable m.
getMainSwarm() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
getMatrix() - Method in class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
Get the constructed Matrix.
getMatrixSize() - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
Returns the dimension as required above.
getMatrixSize() - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
This function should return the number of "doubles" required in the matrix in order to perform the mapping.
getMax() - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Get the maximum bound value.
getMaxCoordinate() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getMaxDepth() - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
getMaxDistance() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
 
getMaxHeight() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getMaximum() - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.ContinuousStep
Get the defined maximum of the Function.
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.Quadric
 
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.Quartic
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.continuous.Shir
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.ContinuousFunction
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getMaximum() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getMaximum() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
getMaximum() - Method in class net.sourceforge.cilib.functions.DiscreteFunction
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.functions.Function
Accessor for the function maximum.
getMaximum() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
getMaximumFitnessEvaluations() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
getMaximumIterations() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Get the maximum iteration count.
getMaximumPeak() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getMaxIterations() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
getMaxLines() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
getMean() - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
getMean() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Get the cached mean Vector.
getMean() - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getMeasuredData() - Method in class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
return the measured data
getMeasuredData() - Method in class net.sourceforge.cilib.games.measurement.AgentMeasure
return the measured data
getMeasuredData() - Method in class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
getMeasuredData() - Method in class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
return the measured data
getMeasurementId(Measurement) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
getMediator() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkRetrievalVisitor
 
getMediator() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
getMessage() - Method in exception net.sourceforge.cilib.type.parser.ParseException
This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in error net.sourceforge.cilib.type.parser.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMin() - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Get the minimum bound value.
getMinCoordinate() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getMinDistance() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
 
getMinimum() - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.ContinuousStep
Get the defined minimum of the Function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Foxholes
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.GoldsteinPrice
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Himmelblau
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.HyperEllipsoid
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Michalewicz12
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction1
Get the minimum value of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction2
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction3
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction4
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.MultimodalFunction5
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.NastyBenchmark
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Neumaier3
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Quadric
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Quartic
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Ripple
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Salomon
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Schaffer2
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Schaffer6
Initialise the function minimum value.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Schwefel
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem1_2
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_21
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_22
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_26
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.ShekelN
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.ShekelsFoxholes
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.Shubert
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.SixHumpCamelBack
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.AbsoluteValue
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Ackley
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Beale
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bird
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bohachevsky1
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Booth
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Branin
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin4
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Bukin6
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Colville
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Damavandi
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Easom
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Griewank
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rastrigin
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Rosenbrock
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Spherical
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF1
 
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF3
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.continuous.UrsemF4
Get the minimum of the function.
getMinimum() - Method in class net.sourceforge.cilib.functions.ContinuousFunction
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getMinimum() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getMinimum() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
getMinimum() - Method in class net.sourceforge.cilib.functions.DiscreteFunction
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.functions.Function
Accessor for the function minimum.
getMinimum() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
getModifiable() - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
getModifiable() - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
get the modifiable list of entities.
getMutationProbability() - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
getMutationStrategy() - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Get the currently specified MutationStrategy.
getN_t() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
returns the severity of change
getN_t() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
returns the severity of change
getName() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
getName() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getName() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getNeighbourhoodBest() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Get the current Particle's neighbourhood best.
getNeighbourhoodBest() - Method in interface net.sourceforge.cilib.entity.Particle
Get the current best particle within the Particles neighbourhood.
getNeighbourhoodBest() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the current Particle's neighbourhood best.
getNeighbourhoodBest() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getNeighbourhoodBest() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Get the current Particle's neighbourhood best.
getNeighbourhoodBestEntities(Topology<T>) - Static method in class net.sourceforge.cilib.entity.Topologies
Obtain the best entity from each neighbourhood and return them.
getNeighbourhoodBestEntities(Topology<T>, Comparator<T>) - Static method in class net.sourceforge.cilib.entity.Topologies
Gather the best entity of each neighbourhood (in this Topology) in a Set (duplicates are not allowed) and return them.
getNeighbourhoodBestUpdateStrategy() - Method in interface net.sourceforge.cilib.entity.SocialEntity
Get the reference to the currently employed NeighbourhoodBestUpdateStrategy.
getNeighbourhoodBestUpdateStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the reference to the currently employed NeighbourhoodBestUpdateStrategy.
getNeighbourhoodSize() - Method in class net.sourceforge.cilib.entity.topologies.HypercubeTopology
Accessor for the number of particles in a neighbourhood.
getNeighbourhoodSize() - Method in class net.sourceforge.cilib.entity.topologies.LBestTopology
Accessor for the number of particles in a neighbourhood.
getNeuralInputArray(NeuralAgent, Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.neural.NeuralStateInputStrategy
Get an input vector for the given game state
getNeuralInputArray(NeuralAgent, Game) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyNeuralInputStrategy
Get an input vector for the given game state
getNeuralInputArray(NeuralAgent, Game) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
Get an input vector for the given game state
getNeuralInputArray(NeuralAgent, Game) - Method in class net.sourceforge.cilib.games.game.tictactoe.TTTStateInputStrategy
Get an input vector for the given game state
getNeuralNetworkTopology() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
getNewPosition(Vector) - Method in class net.sourceforge.cilib.boa.bee.ExplorerBee
Returns a new random position.
getNextGradient() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the array used to store the future gradient of the particle.
getNextId() - Static method in class net.sourceforge.cilib.entity.EntityIdFactory
Get the next number in the sequence as an id for the Entity.
getNextPlayerID(int) - Method in class net.sourceforge.cilib.games.game.Game
This method returns the playerID who would play directly after the playerID that is given to the method.
getNextToken() - Method in class net.sourceforge.cilib.type.parser.DomainParser
Get the next Token.
getNextToken() - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Get the next Token.
getNoOutputs() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getNoPatterns() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getNormal() - Method in class net.sourceforge.cilib.math.random.RandomNumber
 
getNormal(double, double) - Method in class net.sourceforge.cilib.math.random.RandomNumber
Convenience method for getGaussian().
getNormalisationParameter() - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getNrEvaluationsPerEpoch() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getNrLayers() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
getNrNeurons() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
getNrNeurons() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
getNrUpdates() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
getNrUpdates() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
getNucleotide(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
getNucleotideString() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
getNumber() - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
 
getNumberOfBits() - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Get the number of bits in the bit string that must be matched.
getNumberOfClusters() - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Return the number of clusters used throughout this clustering problem.
getNumberOfCompetitors(int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
getNumberOfEntitesPerList() - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
getNumberOfEvals() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getNumberOfEvaluations() - Method in class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
getNumberOfLists() - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
getNumberOfObjects() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getNumberOfOpponents() - Method in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
getNumberOfParticipants() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getNumberOfPatterns() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Determine how many patterns are in this constructed/combined/built dataset.
getNumberOfPatterns() - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getNumberOfPatternsInDataSet() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the number of patterns in the ClusteringUtils.clusterableDataSet.
getNumberOfSentries() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
getNumberPatternsCorrect() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getNumberPatternsIncorrect() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getNumInputVectors() - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
This function retrieves the number of input vectors that forms part of the dataset.
getNumOfPairs() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Get the number of pairs within this RNAConformation.
getObjectiveAssignmentStrategy() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
getOfflineError() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getOfflinePerformance() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getOffset() - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Get the offset associated with the function.
getOffset() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
getOffset() - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
getOffspring() - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
getOnlookerTopology() - Method in class net.sourceforge.cilib.boa.ABC
 
getOperator() - Method in class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
 
getOperator() - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
getOperatorPipeline() - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Get the List<Operator> that represents the sequence of operators to be performed within the current IterationStrategy.
getOperatorStrategy(String) - Static method in class net.sourceforge.cilib.entity.operators.mutation.MutationOperatorFactory
Factory method to create the correct operator implementation object.
getOperatorStrategy() - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
Get the defined net.sourceforge.cilib.offspringList.operators.mutation.MutationOperatorStrategy.
getOpponentSelectionStrategy() - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
getOptimisationProblem() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Get the specified OptimisationProblem.
getOptimisationProblem() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Get the specified OptimisationProblem.
getOptimisationProblem() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Get the specified OptimisationProblem.
getOptimisationProblem() - Method in class net.sourceforge.cilib.ec.EC
Get the specified OptimisationProblem.
getOptimisationProblem() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
getOptimisationProblems() - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
getOriginalCentroids() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the structure that represents the split-up centroids before the non-associated centroids were removed.
getOriginalClusters() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the structure that represents the seperate clusters before the empty clusters were removed.
getOutputActivationFunction() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
Get the type of NeuronFunction that is used to construct the output layer Neural Network
getOutputBuffer() - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Get the current SynchronizedOutputBuffer.
getOutputDim() - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
Gets the value of D, the output dimension.
getOutputFunction() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
getOutputInterpretationStrategy() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
getOutputSensitivityThreshold() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getP() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
getP() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable p.
getParameter() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Get the value of the represented parameter.
getParameter(double, double) - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Get the parameter value based on the provided min and max.
getParameter() - Method in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Get the value of the represented parameter.
getParameter(double, double) - Method in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Get the parameter value based on the provided min and max.
getParameter() - Method in interface net.sourceforge.cilib.controlparameter.ControlParameter
Get the value of the represented parameter.
getParameter(double, double) - Method in interface net.sourceforge.cilib.controlparameter.ControlParameter
Get the parameter value based on the provided min and max.
getParameter() - Method in class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Get the value of the represented parameter.
getParameter(double, double) - Method in class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Get the parameter value based on the provided min and max.
getParameter() - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Get the value of this parameter after it has been multiplied with a uniform random number.
getParameter(double, double) - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Get the parameter value based on the provided min and max.
getPattern(int) - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Get the pattern that is represented by the given index.
getPattern(int) - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getPatternExpression() - Method in class net.sourceforge.cilib.problem.dataset.DataSet
Get the regular expression that has been set for this DataSet.
getPatternInputPos() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getPatterns() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Get all the patterns in this constructed/combined/built dataset.
getPatterns() - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getPatternsInDataSet() - Method in class net.sourceforge.cilib.util.ClusteringUtils
Get the patterns in the ClusteringUtils.clusterableDataSet.
getPatternWeight() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getPCore() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
getPeakHeights() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getPeakPositions() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getPenalty(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFogel
 
getPenalty(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFourFour
 
getPenalty(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty
 
getPenalty(ArrayList<String>) - Method in interface net.sourceforge.cilib.bioinf.sequencealignment.GapPenaltiesMethod
 
getPercentage() - Method in class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
getPercentage() - Method in class net.sourceforge.cilib.simulator.ProgressEvent
Accessor for the percentage completed.
getPercentageComplete() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Returns the percentage the algorithm is from completed (as a fraction).
getPercentageCompleted() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Determines the percentage complete for the associated algorithm.
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
Calculate a rough completion percentage estimate of the Algorithm based on the MinimumDiversity.calculatedDiversity, MinimumDiversity.maximumDiversity and MinimumDiversity.minimumDiversity.
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Determines the percentage complete for the associated algorithm.
getPercentageCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
getPercentageCompleted() - Method in interface net.sourceforge.cilib.stoppingcondition.StoppingCondition
Determines the percentage complete for the associated algorithm.
getPercentageWon() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get the percentage of games won from the total games played
getPersonalBestUpdateStrategy() - Method in interface net.sourceforge.cilib.entity.Particle
Get the current strategy to perform personal best updates.
getPersonalBestUpdateStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the current strategy to perform personal best updates.
getPitchAdjustingRate() - Method in class net.sourceforge.cilib.hs.HS
Get the current pitch adjusting rate as a ControlParameter.
getPlayCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get the number of games played
getPlayer(int) - Method in class net.sourceforge.cilib.games.game.Game
 
getPlayerCount() - Method in class net.sourceforge.cilib.games.game.Game
get the number of players
getPlayerID() - Method in class net.sourceforge.cilib.games.agent.Agent
 
getPlayerID() - Method in class net.sourceforge.cilib.games.items.PlayerItem
 
getPlayerIDList(int) - Method in class net.sourceforge.cilib.games.game.Game
return a list of all the playerID's, in the order that they would play starting with startPlayerID
getPlayerScore(int) - Method in class net.sourceforge.cilib.games.game.Game
return the fitness of the agent
getPoisson(double, double) - Static method in class net.sourceforge.cilib.math.random.DiscreteRandomNumber
Get the value of the Poisson distribution given a specific point and specific lambda value.
getPopulationCenter() - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getPopulationID(int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
getPopulationID() - Method in class net.sourceforge.cilib.coevolution.competitors.Competitor
 
getPopulationID() - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
get the populationID of the Competitor's in this object
getPopulations() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Get the List of current sub-populations.
getPopulationSelection() - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
getPopulationSize() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getPosition() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Get the position of the Particle.
getPosition() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Gets the bee's position (contents).
getPosition() - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Gets the bee's position (contents).
getPosition() - Method in interface net.sourceforge.cilib.entity.Particle
Get the current position of the Particle.
getPosition() - Method in class net.sourceforge.cilib.problem.OptimisationSolution
Returns the position of this solution within the search space of the problem.
getPosition() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the position of the Particle.
getPosition() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getPosition() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Get the position of the Particle.
getPositionDeviation() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
getPositionInitialisationStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the current PositionInitialisationStrategy.
getPositionThreshold() - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
getPositionUpdateStrategy() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Getter method for the position update strategy.
getPositionUpdateStrategy() - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Getter method for the position update strategy.
getPositionUpdateStrategy() - Method in interface net.sourceforge.cilib.entity.Particle
Get the current PositionUpdateStrategy of the Particle.
getPositionUpdateStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the current PostionUpdateStrategy associated with this Particle.
getPrecision() - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
getPrecision() - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
getPredLocation() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
 
getPreviousChange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
getPreviousPosition() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the position of the particle in the previous step.
getPreviousVelocity() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the velocity of the particle in the previous step.
getPreyLocation() - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
 
getProperties() - Method in class net.sourceforge.cilib.entity.AbstractEntity
Get the properties associate with the Entity.
getProperties() - Method in interface net.sourceforge.cilib.entity.CandidateSolution
Get the properties associated with this CandidateSolution.
getProperties() - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Get the properties associated with this CandidateSolution.
getProperties() - Method in interface net.sourceforge.cilib.entity.Entity
Get the properties associate with the Entity.
getPrototypeError() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getPrototypeError() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
getPruningSelection() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
getPso() - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
getQuitAnywayAfterIterations() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
getRadius() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getRadius() - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Get the value of the radius.
getRadius() - Method in class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
 
getRand1() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the first RandomNumber.
getRand2() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the secondRandomNumber.
getRand3() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the third RandomNumber.
getRandom() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getRandom() - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Get the current random number generator.
getRandomComponent() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
getRandomGenerator() - Method in class net.sourceforge.cilib.math.random.RandomNumber
Return the random number generator being used.
getRandomGenerator() - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
getRandomGenerator() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Retrieve the random number generator being used.
getRandomGenerator() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Retrieve the random number generator being used.
getRandomGenerator() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Retrieve the random number generator being used.
getRandomiser() - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Return the current Random.
getRandomiser() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
getRandomiser() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
getRandomizer() - Method in class net.sourceforge.cilib.games.states.GameState
 
getRandomNumber() - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
getRandomNumber() - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
getRandomNumberGenerator() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
getRandomParentEntities(Topology<? extends Entity>) - Static method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get a list of individuals that are suitable to be used within the recombination arithmetic operator.
getRange() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Get the range of the BoundedControlParameter.
getRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
getRange() - Method in class net.sourceforge.cilib.type.types.Bounds
 
getRawFitness(Type) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This method finds the fitness of the solution without applying the derating function.
getReal() - Method in class net.sourceforge.cilib.type.types.Bit
Get the state of the Bit returned as a double value.
getReal(int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Get the double value of the Numeric at position index.
getReal() - Method in class net.sourceforge.cilib.type.types.Int
Get the value of this Numeric.
getReal() - Method in class net.sourceforge.cilib.type.types.Long
Get the value of this Numeric.
getReal() - Method in class net.sourceforge.cilib.type.types.Numeric
Get the value of this Numeric.
getReal() - Method in class net.sourceforge.cilib.type.types.Real
Get the value of this Numeric.
getReevaluationRatio() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Get the ratio of entities that should be reevaluated.
getReevaluationRatio() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Get the ratio of entities that should be reevaluated.
getReinitialisationRatio() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
getReinitializationRatio() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Get the ratio of entities that should be reinitialized.
getReinitializationRatio() - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Get the ratio of entities that should be reinitialized.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.Bit
Get the type representation of this Bit object as a string.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Get the representation of this Vector object in the form expressed by the domain notation.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
getRepresentation() - Method in class net.sourceforge.cilib.type.types.container.Set
Not supported for this container.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.Int
Get the type representation of this Int object as a string.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.Long
Get the type representation of this Long object as a string.
getRepresentation() - Method in class net.sourceforge.cilib.type.types.Numeric
 
getRepresentation() - Method in class net.sourceforge.cilib.type.types.Real
Get the type representation of this Real object as a string.
getRepresentation(Type) - Static method in class net.sourceforge.cilib.type.types.Types
Get the representation of the type in the form expressed by the domain notation.
getRequiredNumberOfBits(DomainRegistry) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
getResolution() - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Accessor for the resolution of the results.
getResponseStrategy() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Get the currently defined EnvironmentChangeResponseStrategy,
getRestarts() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Returns the number of times that the algorithm has been restarted.
getRestarts() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
getResult() - Method in class net.sourceforge.cilib.entity.visitor.ClosestEntityVisitor
Get the result of the visitor.
getResult() - Method in class net.sourceforge.cilib.entity.visitor.DiameterVisitor
 
getResult() - Method in class net.sourceforge.cilib.entity.visitor.RadiusVisitor
 
getResult() - Method in class net.sourceforge.cilib.entity.visitor.SpatialRadiusVisitor
 
getResult() - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
Get the result of the visitor after it has performed the visit() action.
getRho() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the current value for rho.
getRhoContractCoefficient() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the coefficient value for rho contraction.
getRhoExpandCoefficient() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the coefficient value for rho expansion.
getRhoLowerBound() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the lower-bound value for rho.
getRightMostBlock() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get the right most block in this shape
getRightPeak() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.Efn2RNAFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.HydrogenBondFitness
 
getRNAFitness(Set<RNAStem>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.MethewsFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.SimpleRNAFitness
 
getRNAFitness(RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness
 
getRotationMatrix() - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
getRotationProbability() - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
getRound() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
 
getRoundsDrawn() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get a list of all the rounds the entity has drawn.
getRoundsLost() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get a list of all the rounds the entity has lost.
getRoundsWon() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get a list of all the rounds the entity has won.
getRow(int) - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Get a Vector representing the row within the Matrix at the given index.
getRowCount() - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Get the number of rows in the Matrix.
getS() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable s.
getSampleId(Algorithm) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
getSamples() - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Accessor for the number of samples to take for each measurement.
getSampleSetSize() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getScaledInput(double, double, double) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
Scale the input value from the specified range to the active range of the input nodes for the NN
getScaleStrategy() - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
getScore(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BestMatch
Get the score of the given alignment.
getScore(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BLOSUM62SoP
 
getScore(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MatchFogel
 
getScore(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.PAM250SoP
 
getScore(ArrayList<String>) - Method in interface net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod
 
getScore(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
getScores() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get a list of all the Scores for this entity
getScores(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get all the Fitness values for all games played by this entity for the specified round
getScoringStrategy() - Method in class net.sourceforge.cilib.games.game.Game
 
getSeed() - Method in class net.sourceforge.cilib.math.random.generator.NetworkBasedSeedSelectionStrategy
 
getSeed() - Static method in class net.sourceforge.cilib.math.random.generator.Seeder
Get a seed value.
getSeed() - Method in interface net.sourceforge.cilib.math.random.generator.SeedSelectionStrategy
Obtain the desired seed value based.
getSeed() - Method in class net.sourceforge.cilib.math.random.generator.ZeroSeederStrategy
Obtain the desired seed value based.
getSeederStrategy() - Static method in class net.sourceforge.cilib.math.random.generator.Seeder
Get the currently defined SeedSelectionStrategy.
getSelectionPercentage() - Method in class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
Get the percentage of selection for the elitist selection.
getSelectionStrategy() - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
getSentries() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
getShortestString() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
getShortestString() - Method in class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
Get the length of the shortest string contained in the processed DataSet objects.
getSigmoid() - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
Get the sigmoid function used within the update strategy.
getSize() - Method in class net.sourceforge.cilib.games.states.ListGameState
 
getSkipValue() - Method in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
getSocial() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Get the social component.
getSocialAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
getSocialAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Get the social acceleration parameter.
getSocialAcceleration() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Get the ControlParameter representing the social component of the velocity update equation.
getSocialBestFitness() - Method in interface net.sourceforge.cilib.entity.SocialEntity
Get the current social best fitness.
getSocialBestFitness() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the current social best fitness.
getSocialBestFitness(Entity) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.IterationNeighbourhoodBestUpdateStrategy
Get the social best fitness (neighbourhood best) of the given Entity.
getSocialBestFitness(Entity) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.MemoryNeighbourhoodBestUpdateStrategy
Get the social best fitness of the entity.
getSocialBestFitness(Entity) - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.NeighbourhoodBestUpdateStrategy
Get the social best fitness (neighbourhood best) of the given Entity.
getSocialRandomGenerator() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
 
getSolutionFitness() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Return the fitness of the solution.
getSolutions() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
getSolutions() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.boa.ABC
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
Can be useful to compare how the different populations are performing.
getSolutions() - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getSolutions() - Method in class net.sourceforge.cilib.ec.EC
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.hs.HS
Get the collection of best solutions.
getSolutions() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getSolutions() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
getSolutions() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
getSolutions() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
getSolutions() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
getSolutions() - Method in class net.sourceforge.cilib.pso.PSO
Get the collection of best solutions.
getSource() - Method in class net.sourceforge.cilib.algorithm.AlgorithmEvent
Accessor for the source algorithm.
getSplitIndex(int) - Method in class net.sourceforge.cilib.cooperative.splitstrategies.IndexedSplitStrategy
 
getSplitStrategy() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
getStandardVelocityUpdate() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
getStartingPos() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
getState(Algorithm, StateAwareMeasurement) - Method in class net.sourceforge.cilib.measurement.MeasurementStateManager
Extract the state of the provided measurement based on the current provided algorithm.
getState() - Method in class net.sourceforge.cilib.measurement.StateAwareMeasurement
Obtain a new externalised state from the current measurement.
getStateInputStrategy() - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
getStaticBlock() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Each shape has one block that never changes position when it rotates.
getSteepness() - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Get the steepness associated with the Sigmoid.
getStoppingConditions() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Get the current list of StoppingCondition instances that are associated with the current Algorithm.
getString() - Method in class net.sourceforge.cilib.type.types.StringType
Get the contained string.
getStrings() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
Get the list of build Strings.
getStrings() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
getSubPopulationDomain(int) - Method in interface net.sourceforge.cilib.problem.coevolution.CoevolutionOptimisationProblem
This method is used by the coevolution algorithm to assign an optimization problem instance to each sub population this optimization problem needs to define the domain for that specific sub population
getSubPopulationDomain(int) - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
This method is used by the coevolution algorithm to assign an optimization problem instance to each sub population this optimization problem needs to define the domain for that specific sub population
getSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Get the subtree with the specified key value.
getSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Return the subTree with the node value of element.
getSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Get the subtree with the specified key value.
getSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Return the subTree with the node value of element.
getSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Get the subtree with the specified key value.
getSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Return the subTree with the node value of element.
getSubTree(E) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Get the subtree with the specified key value.
getSubTree(int) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Return the subTree with the node value of element.
getSuccessCountThreshold() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Get the count of success threshold.
GetSuffix(int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Get the suffix.
getTabSize(int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
getTarget() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
getTarget() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
getTarget() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getTargetEntity() - Method in class net.sourceforge.cilib.entity.visitor.ClosestEntityVisitor
Get the target entity for which this visitor bases it's calculations on.
getTargetLength() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
getTargetLength() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
getTargetRandomString() - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Get the target random bit string to match.
getTargetSolution() - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
 
getTargetVectorSelectionStrategy() - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Obtain the SelectionStrategy used to select the target vector.
getTau() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
returns the iteration number
getTau() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
returns the iteration number
getTau_t() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
returns the frequency of change
getTau_t() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
returns the frequency of change
getTestingSet() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getTestingSetPercentage() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getTheMethod() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
getTheMethod() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
getTheta() - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
getTimeStepMap() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getTminus1Output() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
getToken() - Method in class net.sourceforge.cilib.games.items.GameItem
 
getToken(int) - Method in class net.sourceforge.cilib.type.parser.DomainParser
Get the specific Token.
getTopMostBlock() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Get the top most block in this shape
getTopology() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
 
getTopology() - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Get the current collection (population) of entities.
getTopology() - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Get the current collection (population) of entities.
getTopology() - Method in class net.sourceforge.cilib.boa.ABC
Get the current collection (population) of entities.
getTopology() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
getTopology() - Method in class net.sourceforge.cilib.ec.EC
Get the current collection (population) of entities.
getTopology() - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
getTopology() - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
 
getTopology() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getTopology() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
getTopology() - Method in class net.sourceforge.cilib.pso.PSO
Accessor for the topology being used.
getTopologyBuilder() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
getTotalEvaluations() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getTotalRowsCleared() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
getTournamentSize() - Method in class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Get the defined size of the tournament.
getTournamentSize() - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Get the size of the tournament.
getTrainer() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
getTrainingSet() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getTrainingSetIterator() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getTrainingSetIterator() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get an Iterator for the training set.
getTrainingSetPercentage() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
getTrainingSetSize() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getTrainingSetSize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get the size of the training set.
getTraversalStrategy() - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
 
getTrialVectorCreationStrategy() - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Get the current strategy for creation of the trial vector.
getTurbulenceProbability() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Get the ControlParameter representing the current turbulence probability.
getUniform() - Method in class net.sourceforge.cilib.math.random.RandomNumber
Get a uniform random number located within 0 <= x < 1.
getUniform(double, double) - Method in class net.sourceforge.cilib.math.random.RandomNumber
Get the uniform random number.
getUnmodifiable() - Method in class net.sourceforge.cilib.entity.topologies.ECTopologyHolder
 
getUnmodifiable() - Method in interface net.sourceforge.cilib.entity.topologies.TopologyHolder
 
getUpperActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
Return the upperbound for the active range of this NeuronFunction
getUpperActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
Return the upperbound for the active range of this NeuronFunction
getUpperActiveRange() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronFunction
Return the upperbound for the active range of this NeuronFunction
getUpperActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated. Return the upperbound for the active range of this NeuronFunction
getUpperActiveRange() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
Return the upperbound for the active range of this NeuronFunction
getUpperBound() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Get the upper bound for the control parameter.
getUpperBound() - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
getUpperBound() - Method in class net.sourceforge.cilib.type.types.Bounds
 
getValidationSetIterator() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getValidationSetIterator() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get an Iterator for the validation set.
getValidationSetSize() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
getValidationSetSize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Get the size of the validation set.
getValue(Algorithm) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAAccuracyMeasurement
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer
 
getValue() - Method in class net.sourceforge.cilib.container.Pair
 
getValue() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.generic.Iterations
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.generic.PercentageComplete
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.generic.Restarts
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.generic.Time
Get the value of the measurement.
getValue(Algorithm) - Method in interface net.sourceforge.cilib.measurement.Measurement
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.CompositeMeasurement
Get the measurement values for all sub-algorithms.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.MultipleFitness
Deprecated. Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.MultipleSolutions
Deprecated.  
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.MultiPopulationFitness
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalFront
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.multiple.ParetoOptimalSet
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.BestParticlePosition
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.BestPositionBoundViolations
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.Diameter
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.DimensionBoundViolationsPerParticle
Get the value of the measurement.
getValue() - Method in class net.sourceforge.cilib.measurement.single.diversity.AverageDiversityAroundAllEntities
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.Diversity
 
getValue() - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
getValue() - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.TopologyBasedNormalisation
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.EuclideanDiversityAroundGBest
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.Fitness
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.FitnessEvaluations
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.FunctionOptimisationError
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.NormalisedDiversity
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.NumberOfClustersFormed
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.ParticleBoundViolations
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.ParticlePositions
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.PbestBoundViolations
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.Solution
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.SpatialExtent
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.measurement.single.StoredFitness
Get the value of the measurement.
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DcPatternCount
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DgPatternCount
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DtPatternCount
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.DvPatternCount
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDg
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDt
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.ErrorDv
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.RobelOverfittingRho
 
getValue() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
Returns the underlying fitness value.
getValue() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
getValue() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
getValue() - Method in interface net.sourceforge.cilib.problem.Fitness
Returns the underlying fitness value.
getValue() - Method in class net.sourceforge.cilib.problem.InferiorFitness
Always returns null.
getValue() - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Returns the underlying fitness value.
getValue() - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Returns the underlying fitness value.
getValue() - Method in class net.sourceforge.cilib.problem.MOFitness
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflineErrorMeasurement
 
getValue(Algorithm) - Method in class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflinePerformanceMeasurement
 
getValue() - Method in class net.sourceforge.cilib.type.parser.DomainParser.DomainNode
 
getValue() - Method in class net.sourceforge.cilib.type.parser.Token
An optional attribute value of the Token.
getVariance() - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
 
getVariance() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
Get the cached variance (scalar).
getVariance() - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
getVelocity() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Get the velocity representation of the Particle.
getVelocity() - Method in interface net.sourceforge.cilib.entity.Particle
Get the current velocity of the Particle.
getVelocity() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the velocity representation of the Particle.
getVelocity() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getVelocity() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Get the velocity representation of the Particle.
getVelocityDampingFactor() - Method in class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
Get the current velocity dampening factor.
getVelocityInitialisationStrategy() - Method in interface net.sourceforge.cilib.entity.Particle
Get the strategy for the intialisation of the velocity.
getVelocityInitialisationStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the VelocityInitialisationStrategy.
getVelocityThreshold() - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
getVelocityUpdateStrategy() - Method in interface net.sourceforge.cilib.entity.Particle
Get the strategy that will be used to update the velocity.
getVelocityUpdateStrategy() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Get the VelocityUpdateStrategy of the current particle.
getVelocityUpdateStrategy() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
getVertex(int) - Method in interface net.sourceforge.cilib.type.types.container.Graph
Get the vertex at the provided index.
getVertex(int) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Get the vertex at the provided index.
getVerticalReflection() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Get the vertical reflection.
getVerticalScale() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Get the value of the vertical scale.
getVerticalShift() - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Get the vertical shift (Y-axis) associated with this function.
getVisitor() - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.TopologyBasedNormalisation
Get the decorated TopologyVisitor.
getVMax() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Get the maximum velocity parameter.
getVMax() - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Get the ControlParameter representing the vMax component.
getW1() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Get the weight that the intra-cluster-distance contributes to the final fitness.
getW2() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Get the weight that determines how much influence inter-cluster-distance contributes to the final fitness.
getW3() - Method in class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
Get the weight that the Quantisation Error contributes to the final fitness.
getWasNeighbourhoodBest() - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Returns the algorithm state variable indicating whether the particle was the neighbourhood best in the previous iteration of the algorithm.
getWeighing() - Method in class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Get the current weighing strategy.
getWeight() - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
getWeight() - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Obtain the weight value associated with this Entry.
getWeight() - Method in class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Get the weight value.
getWeight1() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Get the value of weight1.
getWeight1() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
getWeightCount() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightCountingVisitor
 
getWeights() - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
getWeights() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkTopology
 
getWeights() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
getWeights() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightExtractingVisitor
 
getWeightValue() - Method in class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
getWidth() - Method in class net.sourceforge.cilib.games.game.GridGame
 
getWidth() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
getWinCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Get the number of times this entity won
getWinCount() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get the number of times the entity this score board is used for has won.
getWinCount(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
 
getWinnerID() - Method in class net.sourceforge.cilib.games.result.WinGameResult
 
getWinScores(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Get all the Fitness values for games Won by this entity for the specified round
getWinValue() - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
getWithinClusterScatter(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
getWorkerBeeNumber() - Method in class net.sourceforge.cilib.boa.ABC
 
getWorkerTopology() - Method in class net.sourceforge.cilib.boa.ABC
 
GoldsteinPrice - Class in net.sourceforge.cilib.functions.continuous
The Goldstein-Price function.

Minimum: f(x) = 3; x = (0, -1)

-2 <= x <= 2

GoldsteinPrice() - Constructor for class net.sourceforge.cilib.functions.continuous.GoldsteinPrice
Create a new instance of GoldsteinPrice.
GradientFunctionMinimisationProblem - Class in net.sourceforge.cilib.problem
 
GradientFunctionMinimisationProblem() - Constructor for class net.sourceforge.cilib.problem.GradientFunctionMinimisationProblem
Creates a new instance of GradientFunctionMinimisationProblem.
GradientOptimisationAlgorithm - Interface in net.sourceforge.cilib.algorithm
Enable the notion of a gradient based optimisation.
GradientOptimisationProblem - Interface in net.sourceforge.cilib.problem
Optimisation problems that are able to provide gradient information should implement this interface.
Graph<E> - Interface in net.sourceforge.cilib.type.types.container
Definition of Graph operations.
GreedyRNAFolder - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
GreedyRNAFolder(RNAFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.GreedyRNAFolder
 
GridGame - Class in net.sourceforge.cilib.games.game
 
GridGame() - Constructor for class net.sourceforge.cilib.games.game.GridGame
 
GridGame(GridGame) - Constructor for class net.sourceforge.cilib.games.game.GridGame
 
GridGame(GridGame, GridGameState) - Constructor for class net.sourceforge.cilib.games.game.GridGame
 
GridGameState - Class in net.sourceforge.cilib.games.states
This is a GameState where all the GameItem's are stored in a matrix.
GridGameState() - Constructor for class net.sourceforge.cilib.games.states.GridGameState
 
GridGameState(int, int) - Constructor for class net.sourceforge.cilib.games.states.GridGameState
 
GridGameState(GridGameState) - Constructor for class net.sourceforge.cilib.games.states.GridGameState
Copy constructor
GridItem - Class in net.sourceforge.cilib.games.items
An object in the game that is located in a grid.
GridItem(int, Enum<?>, int, int) - Constructor for class net.sourceforge.cilib.games.items.GridItem
 
GridItem(int, Enum<?>, ItemLocation) - Constructor for class net.sourceforge.cilib.games.items.GridItem
 
GridItem(int, Enum<?>, int, int, int) - Constructor for class net.sourceforge.cilib.games.items.GridItem
 
GridItem(GridItem) - Constructor for class net.sourceforge.cilib.games.items.GridItem
Copy constructor
GridLocation - Class in net.sourceforge.cilib.games.items
 
GridLocation(int, int) - Constructor for class net.sourceforge.cilib.games.items.GridLocation
 
GridLocation(int, int, int) - Constructor for class net.sourceforge.cilib.games.items.GridLocation
 
GridLocation(GridLocation) - Constructor for class net.sourceforge.cilib.games.items.GridLocation
 
Griewank - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Generalised Griewank function.
Griewank() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Griewank
Create an instance of Griewank.
GuideSelectionStrategy - Interface in net.sourceforge.cilib.pso.moo.guideselectionstrategies
With Multi-objective PSOs the pBest and lBest (or gBest) particles are replaced with the concept of local and global guides respectively.
GuideUpdateStrategy - Interface in net.sourceforge.cilib.pso.moo.guideupdatestrategies
This class is used in combination with GuideSelectionStrategy to determine when and if a particle's guides get updated.

H

HalkidiVazirgiannisIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Halkidi-Vazirgiannis Validity Index.
HalkidiVazirgiannisIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.HalkidiVazirgiannisIndex
Create a new instance of HalkidiVazirgiannisIndex.
handleProgressEvent(ProgressEvent) - Method in class net.sourceforge.cilib.simulator.NoProgress
 
handleProgressEvent(ProgressEvent) - Method in interface net.sourceforge.cilib.simulator.ProgressListener
Process the given progress event.
handleProgressEvent(ProgressEvent) - Method in class net.sourceforge.cilib.simulator.ProgressText
 
Harmony - Class in net.sourceforge.cilib.entity
Entity definition for a Harmony.
Harmony() - Constructor for class net.sourceforge.cilib.entity.Harmony
 
Harmony(Harmony) - Constructor for class net.sourceforge.cilib.entity.Harmony
 
hashCode() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
hashCode() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
 
hashCode() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
hashCode() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
hashCode() - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
hashCode() - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. 
hashCode() - Method in class net.sourceforge.cilib.container.Pair
hashCode() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
hashCode() - Method in class net.sourceforge.cilib.ec.Individual
hashCode() - Method in class net.sourceforge.cilib.entity.AbstractEntity
hashCode() - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
hashCode() - Method in class net.sourceforge.cilib.entity.Harmony
hashCode() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
hashCode() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
hashCode() - Method in interface net.sourceforge.cilib.entity.Topology
hashCode() - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
 
hashCode() - Method in class net.sourceforge.cilib.problem.InferiorFitness
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.problem.MOFitness
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.problem.OptimisationSolution
 
hashCode() - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
hashCode() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
hashCode() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
hashCode() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
hashCode() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
 
hashCode() - Method in class net.sourceforge.cilib.type.types.Bit
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.Blackboard
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.Bounds
 
hashCode() - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.Set
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
 
hashCode() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.container.Vector
Returns a hash code value for the Vector.
hashCode() - Method in class net.sourceforge.cilib.type.types.Int
Return the value of the object itself.
hashCode() - Method in class net.sourceforge.cilib.type.types.Long
Return the value of the object itself.
hashCode() - Method in class net.sourceforge.cilib.type.types.Numeric
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.Real
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.type.types.StringType
Returns the hash code value for this list.
hashCode() - Method in interface net.sourceforge.cilib.type.types.Type
Returns the hash code value for this list.
hashCode() - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Obtain the hash of the decorated element.
hasMemory - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
 
hasMore() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
hasMore() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
hasMore() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
hasMore() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
hasNext() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
hasNext() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Returns true if this list iterator has more elements when traversing the list in the forward direction.
hasNext() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree.TreeIterator
hasPrevious() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Returns true if this list iterator has more elements when traversing the list in the reverse direction.
helper - Variable in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
hiddenNodesCount - Variable in class net.sourceforge.cilib.games.agent.NeuralAgent
 
Himmelblau - Class in net.sourceforge.cilib.functions.continuous
The Himmelblau function.
Himmelblau() - Constructor for class net.sourceforge.cilib.functions.continuous.Himmelblau
Create an instance of the Himmelblau function.
HoneyBee - Interface in net.sourceforge.cilib.boa.bee
Super interface for all types of bees in the artificial bee algorithm.
HS - Class in net.sourceforge.cilib.hs
Harmony Search as published in K.S.
HS() - Constructor for class net.sourceforge.cilib.hs.HS
Default constructor.
HS(HS) - Constructor for class net.sourceforge.cilib.hs.HS
Copy constructor.
HybridCooperativeAlgorithm - Class in net.sourceforge.cilib.cooperative
 
HybridCooperativeAlgorithm() - Constructor for class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Create a new instance of HybridCooperativeAlgorithm.
HybridCooperativeAlgorithm(HybridCooperativeAlgorithm) - Constructor for class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Copy constructor.
HydrogenBondFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
HydrogenBondFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.HydrogenBondFitness
 
HydrogenBondFitness(HydrogenBondFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.HydrogenBondFitness
 
HyperbollicTangentOutputFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
Hyperbollic Tangent Function.
HyperbollicTangentOutputFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.HyperbollicTangentOutputFunction
 
HypercubeTopology<E extends Entity> - Class in net.sourceforge.cilib.entity.topologies
 
HypercubeTopology() - Constructor for class net.sourceforge.cilib.entity.topologies.HypercubeTopology
 
HypercubeTopology(HypercubeTopology<E>) - Constructor for class net.sourceforge.cilib.entity.topologies.HypercubeTopology
 
HyperEllipsoid - Class in net.sourceforge.cilib.functions.continuous
HyperEllipsoid.
HyperEllipsoid() - Constructor for class net.sourceforge.cilib.functions.continuous.HyperEllipsoid
Creates a new instance of HyperEllipsoid.

I

id - Variable in class net.sourceforge.cilib.type.parser.SimpleNode
 
image - Variable in class net.sourceforge.cilib.type.parser.Token
The string image of the token.
ImperfectSplitStrategy - Class in net.sourceforge.cilib.cooperative.splitstrategies
Split an OptimisationProblem into sub-problems of unequal size/dimension.
ImperfectSplitStrategy() - Constructor for class net.sourceforge.cilib.cooperative.splitstrategies.ImperfectSplitStrategy
 
inBuf - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
increaseIteration() - Method in class net.sourceforge.cilib.games.states.GameState
 
incrementEvaluationround() - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionProblemAdapter
 
incrementEvaluationsPerEpoch() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
index - Variable in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
 
index - Variable in class net.sourceforge.cilib.games.random.ListSeedingStrategy
 
IndexedSplitStrategy - Class in net.sourceforge.cilib.cooperative.splitstrategies
 
IndexedSplitStrategy() - Constructor for class net.sourceforge.cilib.cooperative.splitstrategies.IndexedSplitStrategy
 
indexOf(Object) - Method in class net.sourceforge.cilib.container.SortedList
indexOf(Object) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
indexOf(Object) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
indexOf(Object) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
indexOf(Object) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
indexOf(Object) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
indices - Variable in class net.sourceforge.cilib.cooperative.splitstrategies.IndexedSplitStrategy
 
Individual - Class in net.sourceforge.cilib.ec
 
Individual() - Constructor for class net.sourceforge.cilib.ec.Individual
Create an instance of Individual.
Individual(Individual) - Constructor for class net.sourceforge.cilib.ec.Individual
Copy constructor.
inertiaWeight - Variable in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
 
InferiorFitness - Class in net.sourceforge.cilib.problem
This class is used to represent a fitness value that is always inferior.
informativeness - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
informativeness - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
InitialisationException - Exception in net.sourceforge.cilib.algorithm
This exception is thrown whenever an algorithm is run without being properly initialised.
InitialisationException() - Constructor for exception net.sourceforge.cilib.algorithm.InitialisationException
Creates a new instance of InitialisationException without detail message.
InitialisationException(String) - Constructor for exception net.sourceforge.cilib.algorithm.InitialisationException
Constructs an instance of InitialisationException with the specified detail message.
initialisationStrategy - Variable in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
 
initialise() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Initialises the algorithm.
initialise(Topology, OptimisationProblem) - Method in class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Perform the required initialisation, using the provided Topology and Problem.
initialise(Topology<? extends Entity>, OptimisationProblem) - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Initialise the Entity collection based on the given Topology and Problem.
initialise(Topology, OptimisationProblem) - Method in class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Initialise the Entity collection based on the given Topology and Problem.
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Intialise the Entity to something meaningful and within the problem space.
initialise() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Intialise the Entity to something meaningful and within the problem space.
initialise(ClusteringProblem, ClusterableDataSet) - Method in interface net.sourceforge.cilib.clustering.kmeans.CentroidsInitialisationStrategy
Initialize the centroid vectors for a clustering.
initialise(ClusteringProblem, ClusterableDataSet) - Method in class net.sourceforge.cilib.clustering.kmeans.DataSetBasedCentroidsInitialisationStrategy
Initialize the centroid vectors for a clustering from randomly chosen patterns in the given dataset.
initialise(ClusteringProblem, ClusterableDataSet) - Method in class net.sourceforge.cilib.clustering.kmeans.RandomCentroidsInitialisationStrategy
Initialize the centroid vectors for a clustering to random positions in the search space.
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.ec.Individual
Intialise the Entity to something meaningful and within the problem space.
initialise(OptimisationProblem) - Method in interface net.sourceforge.cilib.entity.Entity
Intialise the Entity to something meaningful and within the problem space.
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.entity.Harmony
Intialise the Entity to something meaningful and within the problem space.
initialise() - Method in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
By now, all the needed DataSets should have been parsed and added to AssociatedPairDataSetBuilder.patterns.
initialise() - Method in class net.sourceforge.cilib.problem.dataset.BinaryDataSetBuilder
 
initialise() - Method in interface net.sourceforge.cilib.problem.dataset.ClusterableDataSet
 
initialise() - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
initialise() - Method in class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
 
initialise() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
initialise() - Method in class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
 
initialise() - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
initialise(ChargedParticle) - Method in interface net.sourceforge.cilib.pso.dynamic.ChargedParticleInitialisationStrategy
Initialise the Particle charge.
initialise(ChargedParticle) - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
The initialise method overrides the parent class initialise method.
initialise(Particle, OptimisationProblem) - Method in class net.sourceforge.cilib.pso.particle.initialisation.DataSetBasedPositionInitialisationStrategy
Initialize the position and best position of the given Particle from the current dataset using the DataSetBasedCentroidsInitialisationStrategy.
initialise(Particle) - Method in class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
initialise(Particle, OptimisationProblem) - Method in interface net.sourceforge.cilib.pso.particle.initialisation.PositionInitialisationStrategy
 
initialise(Particle) - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
initialise(Particle) - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomInitialVelocityStrategy
 
initialise(Particle, OptimisationProblem) - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomizedPositionInitialisationStrategy
Deprecated.  
initialise(Particle) - Method in interface net.sourceforge.cilib.pso.particle.initialisation.VelocityInitialisationStrategy
Initialise the Particle velocity.
initialise(Particle) - Method in class net.sourceforge.cilib.pso.particle.initialisation.ZeroInitialVelocityStrategy
 
initialise(OptimisationProblemAdapter) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
 
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
initialise(OptimisationProblem) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Intialise the Entity to something meaningful and within the problem space.
initialise() - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Initialise the require output buffers for the MeasurementSuite.
initialise() - Method in class net.sourceforge.cilib.simulator.Simulation
 
initialiseParser() - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
 
Initializable - Interface in net.sourceforge.cilib.neuralnetwork.foundation
TODO: Complete this javadoc.
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
initialize() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.Initializable
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
initialize() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DataDistributionStrategy
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Perform the needed initialisation for the data object.
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.LayeredGenericTopology
 
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.InputOutputGenericTopologyBuilder
initialize() - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
initializeAgent(Type) - Method in class net.sourceforge.cilib.games.agent.Agent
Initialize the agent with the contents of an entity.
initializeAgent(Type) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
Initialize the agent with the contents of an entity.
initializeAgent(Type) - Method in class net.sourceforge.cilib.games.agent.RandomAgent
Initialize the agent with the contents of an entity.
initializeAgent(Type) - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
Initialize the agent with the contents of an entity.
initializeAgent(int, Type) - Method in class net.sourceforge.cilib.games.game.Game
This method initializes an agent with entity data.
initializeEntities(PopulationBasedAlgorithm, int) - Method in interface net.sourceforge.cilib.problem.coevolution.CoevolutionOptimisationProblem
This method adds any problem specific entries to the all the populations entites's blackboards.
initializeEntities(PopulationBasedAlgorithm, int) - Method in class net.sourceforge.cilib.problem.coevolution.CompetitiveCoevolutionGameLearningOptimizationProblem
This method adds any problem specific entries to the all the populations entites's blackboards.
initializeEvaluator(Type) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.EndGameStateEvaluator
Some state evaluators can be optimised, and therefore the evaluator should be initialized with evaluator specific data.
initializeEvaluator(Type) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
Some state evaluators can be optimised, and therefore the evaluator should be initialized with evaluator specific data.
initializeEvaluator(Type) - Method in interface net.sourceforge.cilib.games.agent.state.evaluation.StateEvaluator
Some state evaluators can be optimised, and therefore the evaluator should be initialized with evaluator specific data.
initializeEvaluator(Type) - Method in class net.sourceforge.cilib.games.game.tetris.PierreDellacherieTetrisEvaluator
Some state evaluators can be optimised, and therefore the evaluator should be initialized with evaluator specific data.
initializeGame() - Method in class net.sourceforge.cilib.games.game.Game
perform any game specific initialization
initializeGame() - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
perform any game specific initialization
initializeGame() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
perform any game specific initialization
initializeGame() - Method in class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
perform any game specific initialization
initializeMeasurements(Game) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGameScoringStrategy
Initialize the game with the neccesary AgentMeasure's that the scoring strategy may require to calculate the Fitness for all the Agents
initializeMeasurements(Game) - Method in class net.sourceforge.cilib.games.game.scoring.GameScoringStrategy
Initialize the game with the neccesary AgentMeasure's that the scoring strategy may require to calculate the Fitness for all the Agents
initializeMeasurements(Game) - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
Initialize the game with the neccesary AgentMeasure's that the scoring strategy may require to calculate the Fitness for all the Agents
initializeMeasurements(Game) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisScoringStrategy
Initialize the game with the neccesary AgentMeasure's that the scoring strategy may require to calculate the Fitness for all the Agents
initializePP(PredatorPreyGame) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
Initialize the positions of the predator and prey agents
initializePP(PredatorPreyGame) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.PredPreyPositionInitializationStrategy
Initialize the positions of the predator and prey agents
initializePP(PredatorPreyGame) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.RandomPredPreyInitializationStrategy
Initialize the positions of the predator and prey agents
initializePP(PredatorPreyGame) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
Initialize the positions of the predator and prey agents
initPeaks() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
InOrderVisitorDecorator<E> - Class in net.sourceforge.cilib.container.visitor
Simple decorator class that wraps the needed Visitor to make it compatible with In-Order Traversals in the Containers defined.
InOrderVisitorDecorator(Visitor<E>) - Constructor for class net.sourceforge.cilib.container.visitor.InOrderVisitorDecorator
 
input - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
input_stream - Variable in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
 
InputOutputGenericTopologyBuilder - Class in net.sourceforge.cilib.neuralnetwork.generic.topologybuilders
 
InputOutputGenericTopologyBuilder() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.InputOutputGenericTopologyBuilder
 
inputReader - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
inputReader - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
inputStream - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
insert(int, E) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Insert the provided Type at the specified index.
insert(int, Type) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Insert the provided Type at the specified index.
insert(int, Numeric) - Method in class net.sourceforge.cilib.type.types.container.Vector
Insert the provided Numeric at the specified index.
instance() - Static method in class net.sourceforge.cilib.problem.InferiorFitness
Obtain a reference to the InferiorFitness instance.
Int - Class in net.sourceforge.cilib.type.types
 
Int() - Constructor for class net.sourceforge.cilib.type.types.Int
Create an instance of Int.
Int(int, int) - Constructor for class net.sourceforge.cilib.type.types.Int
Create an instance of Int randomly initialised between lower and upper.
Int(int) - Constructor for class net.sourceforge.cilib.type.types.Int
Create an Int with the specified value.
Int(Int) - Constructor for class net.sourceforge.cilib.type.types.Int
Create a copy of the provided instance.
InterClusterDistance - Class in net.sourceforge.cilib.functions.clustering
This clustering fitness function will probably never be used to train on directly.
InterClusterDistance() - Constructor for class net.sourceforge.cilib.functions.clustering.InterClusterDistance
 
interval - Variable in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
IntraClusterDistance - Class in net.sourceforge.cilib.functions.clustering
This clustering fitness function will probably never be used to train on directly.
IntraClusterDistance() - Constructor for class net.sourceforge.cilib.functions.clustering.IntraClusterDistance
 
InvertedFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
Function implementation to accept a function and to return the reciprocal of that function value.
InvertedFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.InvertedFunctionDecorator
 
invokeTrainer(Object) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
invokeTrainer(Object) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.TrainingStrategy
 
invokeTrainer(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
isAltitudeDiff() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isColumnTransisitons() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isCompleted() - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Determines whether the stopping condition has been satisfied (equivalent to StoppingCondition.getPercentageCompleted() == 1.0 but may be more efficient).
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
Calculate the diversity of the population and store it.
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Determines whether the stopping condition has been satisfied (equivalent to StoppingCondition.getPercentageCompleted() == 1.0 but may be more efficient).
isCompleted() - Method in class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
isCompleted() - Method in interface net.sourceforge.cilib.stoppingcondition.StoppingCondition
Determines whether the stopping condition has been satisfied (equivalent to StoppingCondition.getPercentageCompleted() == 1.0 but may be more efficient).
isConnected(E, E) - Method in interface net.sourceforge.cilib.type.types.container.Graph
Determine if a and b are connected by an edge.
isConnected(E, E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Determine if the provided vertex objects are connected.
isConnectedHoles() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isCyclic() - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
isDominatedBy(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.Archive
Checks the archive and accumulates all solutions that is dominated by candidateSolution.
isDominatedBy(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
isDominatedBy(OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
isDone() - Method in class net.sourceforge.cilib.container.visitor.Visitor
Determine if the visitor has completed its visit operation.
isEmpty() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
isEmpty() - Method in class net.sourceforge.cilib.container.SortedList
Returns true if this list contains no elements.
isEmpty() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
isEmpty() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
isEmpty() - Method in interface net.sourceforge.cilib.entity.Topology
isEmpty() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
isEmpty() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
isEmpty() - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.SpecificWeightInitialiser
 
isEmpty() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
isEmpty() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Determine if the current Tree is empty.
isEmpty() - Method in class net.sourceforge.cilib.type.types.container.Set
Determine if the current Structure is empty.
isEmpty() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Determine if the current Structure is empty.
isEmpty() - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Determine if the current Structure is empty.
isEmpty() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Determine if the current Structure is empty.
isEmpty() - Method in class net.sourceforge.cilib.type.types.container.Vector
Return true if the Vector contains no elements.
isErodedShapeBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isFinished() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Returns true if the algorithm has finished executing.
isHoles() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isInCell(int, int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Check if there are any Blocks in the specified cell
isInsideBounds(double) - Method in class net.sourceforge.cilib.type.types.Bounds
 
isInsideBounds() - Method in class net.sourceforge.cilib.type.types.container.Set
isInsideBounds(Type) - Static method in class net.sourceforge.cilib.type.types.Types
Determine if the current type instance is within the defined bounds of the domain.
isInvalid() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Determine if the current RNAConformation is valid.
isLandingHeight() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isLeaf() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Determine if the current Tree node is a leaf node in the current structure.
isLeaf() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Determine if the current Tree node is a leaf node in the current structure.
isLeaf() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Determine if the current Tree node is a leaf node in the current structure.
isLeaf() - Method in interface net.sourceforge.cilib.type.types.container.Tree
Determine if the current Tree node is a leaf node in the current structure.
isMaxWellDepth() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isNoBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isOutputNeuron() - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
isPileHeight() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isPseudoknot(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
Returns true if the base pairs form a pseudoknot formation.
isRemovedLines() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isRowTransitions() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isStateAware() - Method in class net.sourceforge.cilib.measurement.StateAwareMeasurement
Get the state awareness of the current measurement.
isSumWells() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
isWeightedBlocks() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
itemLocation - Variable in class net.sourceforge.cilib.games.items.GameItem
 
ItemLocation - Interface in net.sourceforge.cilib.games.items
 
iter - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
IterationBasedChangeStrategy - Class in net.sourceforge.cilib.problem.changestrategy
An IterationBasedChangeStrategy is a test to ensure that a problem is altered or changed at a predefined frequency.
IterationBasedChangeStrategy() - Constructor for class net.sourceforge.cilib.problem.changestrategy.IterationBasedChangeStrategy
Create a new instance.
iterationCompleted(AlgorithmEvent) - Method in interface net.sourceforge.cilib.algorithm.AlgorithmListener
This event is fired after each iteration of the mail loop of the algorithm.
iterationCompleted(AlgorithmEvent) - Method in class net.sourceforge.cilib.measurement.generic.Time
This event is fired after each iteration of the mail loop of the algorithm.
iterationCompleted(AlgorithmEvent) - Method in class net.sourceforge.cilib.simulator.Simulation
 
IterationNeighbourhoodBestUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
 
IterationNeighbourhoodBestUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.IterationNeighbourhoodBestUpdateStrategy
 
Iterations - Class in net.sourceforge.cilib.measurement.generic
 
Iterations() - Constructor for class net.sourceforge.cilib.measurement.generic.Iterations
Creates a new instance of Iterations.
Iterations(Iterations) - Constructor for class net.sourceforge.cilib.measurement.generic.Iterations
Copy constructor.
IterationStrategy<E extends PopulationBasedAlgorithm> - Interface in net.sourceforge.cilib.algorithm.population
Interface to define the manner in which an iteration is defined for a PopulationBasedAlgorithm.
iterator() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
iterator() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
iterator() - Method in class net.sourceforge.cilib.container.SortedList
Returns an iterator over this sequence in proper order.
iterator() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
iterator() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
iterator() - Method in interface net.sourceforge.cilib.entity.Topology
iterator() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
iterator() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
iterator() - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
iterator() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
iterator() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
iterator() - Method in class net.sourceforge.cilib.type.types.container.Set
iterator() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
iterator() - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
iterator() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Returns an iterator over the elements in this list in proper sequence.
iterator() - Method in class net.sourceforge.cilib.type.types.container.Vector
Obtain an iterator to traverse the Vector iteratively.
iteratorDg - Variable in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
iteratorDg - Variable in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
iteratorDt - Variable in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.FFNNEvaluationMediator
Deprecated.  
iteratorDt - Variable in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 

J

jj_nt - Variable in class net.sourceforge.cilib.type.parser.DomainParser
Next token.
jjFillToken() - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
 
jjstrLiteralImages - Static variable in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Token literal values.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTdimension
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTdomainElement
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTelement
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTexponent
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTlowerDim
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTnumber
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTrepeat
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTrootElement
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTtype
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTupperDim
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.ASTvalue
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in interface net.sourceforge.cilib.type.parser.Node
Accept the visitor.
jjtAccept(DomainParserVisitor, Object) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
Accept the visitor.
jjtAddChild(Node, int) - Method in interface net.sourceforge.cilib.type.parser.Node
This method tells the node to add its argument to the node's list of children.
jjtAddChild(Node, int) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtClose() - Method in interface net.sourceforge.cilib.type.parser.Node
This method is called after all the child nodes have been added.
jjtClose() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
JJTDIMENSION - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTDOMAINELEMENT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTDomainParserState - Class in net.sourceforge.cilib.type.parser
 
JJTDomainParserState() - Constructor for class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
JJTELEMENT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTEXPONENT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
jjtGetChild(int) - Method in interface net.sourceforge.cilib.type.parser.Node
This method returns a child node.
jjtGetChild(int) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtGetNumChildren() - Method in interface net.sourceforge.cilib.type.parser.Node
Return the number of children the node has.
jjtGetNumChildren() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtGetParent() - Method in interface net.sourceforge.cilib.type.parser.Node
 
jjtGetParent() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtGetValue() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
JJTLOWERDIM - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
jjtNodeName - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTNUMBER - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
jjtOpen() - Method in interface net.sourceforge.cilib.type.parser.Node
This method is called after the node has been made the current node.
jjtOpen() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtree - Variable in class net.sourceforge.cilib.type.parser.DomainParser
 
JJTREPEAT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTROOTELEMENT - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
jjtSetParent(Node) - Method in interface net.sourceforge.cilib.type.parser.Node
This pair of methods are used to inform the node of its parent.
jjtSetParent(Node) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
jjtSetValue(Object) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
JJTTYPE - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTUPPERDIM - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 
JJTVALUE - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserTreeConstants
 

K

k - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
key - Variable in class net.sourceforge.cilib.type.types.container.AbstractTree
 
KHarmonicMeansFunction - Class in net.sourceforge.cilib.functions.clustering
This is the k-harmonic means clustering fitness function.
KHarmonicMeansFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.KHarmonicMeansFunction
 
kind - Variable in class net.sourceforge.cilib.type.parser.Token
An integer that describes the kind of this token.
KMeans - Class in net.sourceforge.cilib.clustering.kmeans
This algorithm is an implementation of the KMeans Clustering algorithm.
KMeans() - Constructor for class net.sourceforge.cilib.clustering.kmeans.KMeans
Create an instance of KMeans.
KMeans(KMeans) - Constructor for class net.sourceforge.cilib.clustering.kmeans.KMeans
Create a copy of the provided instance.
KnapSack - Class in net.sourceforge.cilib.functions.discrete
Perform the knapsack problem optimisation.
KnapSack() - Constructor for class net.sourceforge.cilib.functions.discrete.KnapSack
 
KnightCoverageProblem - Class in net.sourceforge.cilib.functions.discrete
Deprecated.  
KnightCoverageProblem(KnightCoverageProblem) - Constructor for class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated.  
KnightsCoverage - Class in net.sourceforge.cilib.functions.discrete
 
KnightsCoverage() - Constructor for class net.sourceforge.cilib.functions.discrete.KnightsCoverage
 
KnightsTour - Class in net.sourceforge.cilib.functions.discrete
An implementation of the Knight's Tour problem function.
KnightsTour() - Constructor for class net.sourceforge.cilib.functions.discrete.KnightsTour
 
KnowledgeTransferStrategy - Interface in net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies
This interface is used in combination with a MultiPopulationBasedAlgorithm to enable different types of knowledge (like global best particle positions etc.) to be shared among different sub-populations during a search.
knownConf - Variable in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
knownStructure - Variable in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
KnuthSubtractive - Class in net.sourceforge.cilib.math.random.generator
An implementation of Knuth's subtractive random number generator.
KnuthSubtractive() - Constructor for class net.sourceforge.cilib.math.random.generator.KnuthSubtractive
Create an instance of KnuthSubtractive.
KnuthSubtractive(long) - Constructor for class net.sourceforge.cilib.math.random.generator.KnuthSubtractive
Create an instance, with the given seed value.
kOffset - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
KruskalEvaluator - Class in net.sourceforge.cilib.problem.mappingproblem
Implements the Kruskal stress function for evaluating the fitness of the MappingProblem.
KruskalEvaluator() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.KruskalEvaluator
 

L

lambda - Variable in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
last() - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the last element contained within the current selection.
last(int) - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the last number of elements from the current selection.
last() - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
last(int) - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
lastIndexOf(Object) - Method in class net.sourceforge.cilib.container.SortedList
lastIndexOf(Object) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
lastIndexOf(Object) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
lastIndexOf(Object) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
lastIndexOf(Object) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
lastIndexOf(Object) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
LayeredGenericTopology - Class in net.sourceforge.cilib.neuralnetwork.generic
TODO: Complete this javadoc.
LayeredGenericTopology() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.LayeredGenericTopology
 
LayerIterator - Interface in net.sourceforge.cilib.neuralnetwork.generic
 
layerSizes - Variable in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
 
LBestTopology<E extends Entity> - Class in net.sourceforge.cilib.entity.topologies
Implementation of the Local Best Neighbourhood topology.
LBestTopology() - Constructor for class net.sourceforge.cilib.entity.topologies.LBestTopology
Creates a new instance of LBestTopology.
LBestTopology(LBestTopology<E>) - Constructor for class net.sourceforge.cilib.entity.topologies.LBestTopology
Copy constructor.
learningEpoch() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
length() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Get the length of the current RNAConformation.
length() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
length() - Method in class net.sourceforge.cilib.container.BitArray
This method returns the number of bits currently represented by the BitArray.
LexicalError(boolean, int, int, int, String, char) - Static method in error net.sourceforge.cilib.type.parser.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexStateNames - Static variable in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Lexer state names.
LFDecorator - Class in net.sourceforge.cilib.pso.particle
LFDecorator.
LFDecorator(Particle) - Constructor for class net.sourceforge.cilib.pso.particle.LFDecorator
Creates a new instance of LFParticleDecorator.
LFPSO - Class in net.sourceforge.cilib.pso
An implementation of the LeapFrog PSO algorithm, a modified Particle Swarm Optimiser based upon the improved leapfrog dynamic method for unconstrained minimization.
LFPSO() - Constructor for class net.sourceforge.cilib.pso.LFPSO
Creates a new instance of LFPSO.
LFVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
 
LFVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
Creates a new instance of LFVelocityUpdate.
LFVelocityUpdate(LFVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
line - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
LinearDataIterator - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
LinearDataIterator(ArrayList<NNPattern>) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
Create an instance, with the provided list.
LinearDecreasingControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to update itself in an linearly decreasing manner.
LinearDecreasingControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.LinearDecreasingControlParameter
Create a new instance of LinearDecreasingControlParameter.
LinearDecreasingControlParameter(LinearDecreasingControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.LinearDecreasingControlParameter
Create a copy of the provided instance.
LinearDistanceMetric - Class in net.sourceforge.cilib.problem.mappingproblem
Represents a method for calculating the structure distance between two vectors in a MappingProblem.
LinearDistanceMetric() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.LinearDistanceMetric
 
LinearIncreasingControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to update itself in an linearly increasing manner.
LinearIncreasingControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.LinearIncreasingControlParameter
Create an instance of LinearDecreasingControlParameter.
LinearIncreasingControlParameter(LinearIncreasingControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.LinearIncreasingControlParameter
Copy constructor.
LinearMappingProblem - Class in net.sourceforge.cilib.problem.mappingproblem
This class provides an adapter for implementation of NonlinearMapping evaluation functions.
LinearMappingProblem() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
 
LinearMappingProblem(LinearMappingProblem) - Constructor for class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
 
LinearOutputFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
 
LinearOutputFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.LinearOutputFunction
 
LinearPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
This sets the position to the velocity.
LinearPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.LinearPositionUpdateStrategy
 
LinearPositionUpdateStrategy(LinearPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.LinearPositionUpdateStrategy
 
LinearVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
TODO: test this.
LinearVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
Create an instance of LinearVelocityUpdate.
LinearWeighing<E> - Class in net.sourceforge.cilib.util.selection.weighing
Apply a weighting to the provided list of elements.
LinearWeighing() - Constructor for class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Create a new instance with the bounds of [0,1].
LinearWeighing(double, double) - Constructor for class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Create a new instance with the linear bounds of [min, max].
LinearWeighing(LinearWeighing<E>) - Constructor for class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Create a copy of the provided instance.
LineShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the line shape
LineShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.LineShape
 
LineShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.LineShape
 
ListGameState - Class in net.sourceforge.cilib.games.states
This is a GameState where GameItem's are stored in a list of items.
ListGameState() - Constructor for class net.sourceforge.cilib.games.states.ListGameState
 
ListGameState(ListGameState) - Constructor for class net.sourceforge.cilib.games.states.ListGameState
Copy constructor
listIterator() - Method in class net.sourceforge.cilib.container.SortedList
listIterator(int) - Method in class net.sourceforge.cilib.container.SortedList
listIterator() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
listIterator(int) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
listIterator() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
listIterator(int) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
listIterator() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
listIterator(int) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
listIterator() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
listIterator(int) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
listIterator() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
listIterator(int) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
ListSeedingStrategy - Class in net.sourceforge.cilib.games.random
This class contains a list of seed values to use.
ListSeedingStrategy() - Constructor for class net.sourceforge.cilib.games.random.ListSeedingStrategy
 
ListSeedingStrategy(ListSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.ListSeedingStrategy
 
LocalDataSet - Class in net.sourceforge.cilib.problem.dataset
This class represents a local dataset, i.e.
LocalDataSet() - Constructor for class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
LocalDataSet(LocalDataSet) - Constructor for class net.sourceforge.cilib.problem.dataset.LocalDataSet
 
log(double, double) - Static method in class net.sourceforge.cilib.math.Maths
Determine the log of the specified value with the provided base.
LognormalPhenotypeUpdateStrategy - Class in net.sourceforge.cilib.ec
 
LognormalPhenotypeUpdateStrategy() - Constructor for class net.sourceforge.cilib.ec.LognormalPhenotypeUpdateStrategy
 
Long - Class in net.sourceforge.cilib.type.types
 
Long() - Constructor for class net.sourceforge.cilib.type.types.Long
Create an instance of Long.
Long(long, long) - Constructor for class net.sourceforge.cilib.type.types.Long
Create an instance of Long randomly initialised between lower and upper.
Long(long) - Constructor for class net.sourceforge.cilib.type.types.Long
Create an Long with the specified value.
Long(Long) - Constructor for class net.sourceforge.cilib.type.types.Long
Create a copy of the provided instance.
LongestCommonSubsequence - Class in net.sourceforge.cilib.functions.discrete
Implementation of the Longest Common Subsequence problem.
LongestCommonSubsequence() - Constructor for class net.sourceforge.cilib.functions.discrete.LongestCommonSubsequence
 
lose(Fitness) - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Indicate that the entity that is contained in this EntityScore has been defeated.
lowerBoundVector(Vector) - Static method in class net.sourceforge.cilib.util.Vectors
Constructs a Vector from vector Vector with each component's value set to the lower bound of that component.
lowerDim() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
LShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the L shape
LShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.LShape
 
LShape(LShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.LShape
 

M

main(String[]) - Static method in class net.sourceforge.cilib.bioinf.rnaprediction.TestStemGenerator
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.TrainAndTestNN
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.tester
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.TestErrorINCLearnWithTrainer
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.TestFFNNandGDTrainer
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.TestNeuronAndEvaluateFFNN
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.TestSAILAwithTrainer
 
main(String[]) - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.XMLmimic
 
Main - Class in net.sourceforge.cilib.simulator
This is the entry point for the CILib simulator.
main(String[]) - Static method in class net.sourceforge.cilib.simulator.Main
 
ManhattanDistanceMeasure - Class in net.sourceforge.cilib.util
Manhattan Distance is a special case of the Minkowski Metric with 'alpha' := 1.
ManhattanDistanceMeasure() - Constructor for class net.sourceforge.cilib.util.ManhattanDistanceMeasure
Create an instance of the ManhattanDistanceMeasure.
MappingEvaluator - Interface in net.sourceforge.cilib.problem.mappingproblem
Class that actually evaluates a given Mapping.
MappingProblem - Class in net.sourceforge.cilib.problem.mappingproblem
Abstract MappingProblem class that allows for implementing methods of mapping high-dimensional data onto lower dimensions.
MappingProblem() - Constructor for class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
 
MatchFogel - Class in net.sourceforge.cilib.bioinf.sequencealignment
A scoring function based on the overall score for the number of matched symbols over all columns.
MatchFogel() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.MatchFogel
 
MathewsFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
MathewsFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
 
MathewsFitness(MathewsFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
 
Maths - Class in net.sourceforge.cilib.math
This class provides helper functions in addtion to the standard java.lang.Math class.
Matrix<E> - Class in net.sourceforge.cilib.container
Deprecated. 
Matrix(int, int) - Constructor for class net.sourceforge.cilib.container.Matrix
Deprecated. Create a new Matrix object with dimensions: rows x columns.
Matrix(Matrix<E>) - Constructor for class net.sourceforge.cilib.container.Matrix
Deprecated. Copy constructor.
MatrixDataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
TODO: This needs to implement the reading of a matrix as needed by MappingProblem.
MatrixDataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
 
MatrixDataSetBuilder(MatrixDataSetBuilder) - Constructor for class net.sourceforge.cilib.problem.dataset.MatrixDataSetBuilder
 
MaulikBandyopadhyayIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
MaulikBandyopadhyayIndex.
MaulikBandyopadhyayIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.MaulikBandyopadhyayIndex
 
maxConsecutiveMinChange - Variable in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
 
maxDepth - Variable in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
MaximisationFitness - Class in net.sourceforge.cilib.problem
 
MaximisationFitness(Double) - Constructor for class net.sourceforge.cilib.problem.MaximisationFitness
Constructs a new MaximisationFitness with the given fitness value.
MaximisationFitness(MaximisationFitness) - Constructor for class net.sourceforge.cilib.problem.MaximisationFitness
Copy constructor.
MaximumDeratingFunction1 - Class in net.sourceforge.cilib.functions.continuous
 
MaximumDeratingFunction1() - Constructor for class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Create an instance of the function.
MaximumFitnessEvaluations - Class in net.sourceforge.cilib.stoppingcondition
 
MaximumFitnessEvaluations() - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
Creates a new instance of MaximumFitnessEvaluationsIndicator.
MaximumFitnessEvaluations(MaximumFitnessEvaluations) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
MaximumFitnessEvaluations(int) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
MaximumIterations - Class in net.sourceforge.cilib.stoppingcondition
 
MaximumIterations() - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Creates a new instance of MaximumIterations.
MaximumIterations(MaximumIterations) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Copy constructor.
MaximumIterations(int) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Create an instance, with the given number of iterations.
MaximumRestarts - Class in net.sourceforge.cilib.stoppingcondition
The maximum number of allowed restarts.
MaximumRestarts() - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
Creates a new instance of MaximumRestarts.
MaximumRestarts(MaximumRestarts) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
MaximumRestarts(int) - Constructor for class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
maxNextCharInd - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
mean(Vector) - Static method in class net.sourceforge.cilib.math.Stats
 
meanVector(Collection<ClusterableDataSet.Pattern>) - Static method in class net.sourceforge.cilib.math.Stats
Calculates the mean Vector of the given set/cluster/collection of ClusterableDataSet.Patterns.
measure(Game<GameState>) - Method in class net.sourceforge.cilib.games.game.tetris.AveTetrisFeaturesMeasure
Measure game specific information and store it
measure(Game<GameState>) - Method in class net.sourceforge.cilib.games.measurement.AgentMeasure
Measure game specific information and store it
measure(Game<GameState>) - Method in class net.sourceforge.cilib.games.measurement.AverageItemDistanceMeasure
 
measure(Game<GameState>) - Method in class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
Measure game specific information and store it
measure(Algorithm) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Measure the provided Algorithm.
Measurement - Interface in net.sourceforge.cilib.measurement
All measurements must implement this interface.
MeasurementFactory - Interface in net.sourceforge.cilib.measurement
 
MeasurementMemento - Class in net.sourceforge.cilib.measurement
 
MeasurementMemento() - Constructor for class net.sourceforge.cilib.measurement.MeasurementMemento
 
MeasurementStateManager - Class in net.sourceforge.cilib.measurement
 
MeasurementStateManager() - Constructor for class net.sourceforge.cilib.measurement.MeasurementStateManager
 
MeasurementSuite - Class in net.sourceforge.cilib.simulator
The MeasurementSuite is essentially a collection of measurements.
MeasurementSuite() - Constructor for class net.sourceforge.cilib.simulator.MeasurementSuite
Creates a new instance of MeasurementSuite.
measures - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
MemoryNeighbourhoodBestUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
This class.....
MemoryNeighbourhoodBestUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.MemoryNeighbourhoodBestUpdateStrategy
 
merge(CoevolutionCompetitorList) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Merge another CoevolutionCompetitorList into this one
merge(PopulationCompetitorList) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Merge this list with the specified list
mergeCurrentShape() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Merge the current AbstractShape into the grid
mergeEntityScore(EntityScore) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Merge the given EntityScore into this scoreboard
mergeScoreBoard(EntityScore) - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Merge this scoreboard with another one
MersenneTwister - Class in net.sourceforge.cilib.math.random.generator
This is an implementation of the MT19937 random number generator.
MersenneTwister() - Constructor for class net.sourceforge.cilib.math.random.generator.MersenneTwister
Default Constructor.
MersenneTwister(long) - Constructor for class net.sourceforge.cilib.math.random.generator.MersenneTwister
Create a MersenneTwister with the given seed value.
MersenneTwister(MersenneTwister) - Constructor for class net.sourceforge.cilib.math.random.generator.MersenneTwister
Copy constructor.
MethewsFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
MethewsFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.MethewsFitness
 
MethewsFitness(MethewsFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.MethewsFitness
 
Michalewicz - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Michalewicz funtion 12.
Michalewicz() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Creates a new instance of EpistaticMichalewicz.
Michalewicz12 - Class in net.sourceforge.cilib.functions.continuous
Michalewicz function.
Michalewicz12() - Constructor for class net.sourceforge.cilib.functions.continuous.Michalewicz12
Create an instance of Michalewicz12.
minChange - Variable in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
 
minChangeCounter - Variable in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
 
MinimisationFitness - Class in net.sourceforge.cilib.problem
This class implements the Comparable interface for a minimisation problem.
MinimisationFitness(Double) - Constructor for class net.sourceforge.cilib.problem.MinimisationFitness
Constructs a new MinimisationFitness with the given fitness value.
MinimisationFitness(MinimisationFitness) - Constructor for class net.sourceforge.cilib.problem.MinimisationFitness
Create a copy of the given MinimisationFitness.
MinimumDiversity - Class in net.sourceforge.cilib.stoppingcondition
A stopping condition that is based on the Diversity of the population.
MinimumDiversity() - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
 
MinimumDiversity(MinimumDiversity) - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
 
MinimumFunctionMinimisationError - Class in net.sourceforge.cilib.stoppingcondition
 
MinimumFunctionMinimisationError() - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
Creates a new instance of MinimumErrorIndicator.
MinimumFunctionMinimisationError(double) - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
MinimumFunctionMinimisationError(MinimumFunctionMinimisationError) - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
MinimumSwarmDiameter - Class in net.sourceforge.cilib.stoppingcondition
 
MinimumSwarmDiameter() - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
Creates a new instance of MinimumSwarmDiameterIndicator.
MinimumSwarmDiameter(double) - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
MinimumSwarmDiameter(MinimumSwarmDiameter) - Constructor for class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
MinkowskiMetric - Class in net.sourceforge.cilib.util
The Minkowski Metric is a generic measure of distance.
MinkowskiMetric() - Constructor for class net.sourceforge.cilib.util.MinkowskiMetric
Instantiate the Minkowski Metric with 'alpha' value equal to zero.
MinkowskiMetric(int) - Constructor for class net.sourceforge.cilib.util.MinkowskiMetric
Instantiate the Minkowski Metric with the specified 'alpha' value.
MinMaxAlphaBetaTraversalStrategy - Class in net.sourceforge.cilib.games.agent.state.traversal
 
MinMaxAlphaBetaTraversalStrategy() - Constructor for class net.sourceforge.cilib.games.agent.state.traversal.MinMaxAlphaBetaTraversalStrategy
 
MinMaxAlphaBetaTraversalStrategy(MinMaxAlphaBetaTraversalStrategy) - Constructor for class net.sourceforge.cilib.games.agent.state.traversal.MinMaxAlphaBetaTraversalStrategy
 
MinMaxDistanceInitializationStrategy - Class in net.sourceforge.cilib.games.game.predatorprey.init
 
MinMaxDistanceInitializationStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
 
MinMaxDistanceInitializationStrategy(MinMaxDistanceInitializationStrategy) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
Copy Constructor
MINUS - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
MNNNeuronAdapter - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
TODO: Complete this javadoc.
MNNNeuronAdapter() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.MNNNeuronAdapter
 
modifyFitness(CoevolutionAlgorithm, Entity) - Method in class net.sourceforge.cilib.coevolution.FitnessSharingStrategy
modifies the fitness of the entity according to a specific fitness sharing strategy.
modifyFitness(CoevolutionAlgorithm, Entity) - Method in class net.sourceforge.cilib.coevolution.StandardFitnessSharingStrategy
in this case, assign the number of victory to the fitness of the Entity.
MOFitness - Class in net.sourceforge.cilib.problem
 
MOFitness(MOOptimisationProblem, Type[], boolean) - Constructor for class net.sourceforge.cilib.problem.MOFitness
 
MOFitness(MOOptimisationProblem, Type, boolean) - Constructor for class net.sourceforge.cilib.problem.MOFitness
 
MOFitness(MOFitness) - Constructor for class net.sourceforge.cilib.problem.MOFitness
 
MOOptimisationProblem - Class in net.sourceforge.cilib.problem
 
MOOptimisationProblem() - Constructor for class net.sourceforge.cilib.problem.MOOptimisationProblem
 
MOOptimisationProblem(MOOptimisationProblem) - Constructor for class net.sourceforge.cilib.problem.MOOptimisationProblem
 
mostInformative - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
mostInformative - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
move(Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.Agent
Alter the current game by making a decision.
move(Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
Alter the current game by making a decision.
move(Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.RandomAgent
Alter the current game by making a decision.
move(Game) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
Alter the current game by making a decision.
move(Game<GameState>) - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
Alter the current game by making a decision.
moveBlock(TetrisBlock, int, int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Move a specific block in this shape
moveItem(Type) - Method in class net.sourceforge.cilib.games.items.GridLocation
Move this location by the specified amount
moveItem(Type) - Method in interface net.sourceforge.cilib.games.items.ItemLocation
Move this location by the specified amount
MOVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
With Multi-objective PSOs the pBest and lBest (or gBest) particles are replaced with the concept of local and global guides respectively.
MOVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
MOVelocityUpdateStrategy(MOVelocityUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
movePlayer(int, int, int) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
Move a specified player
moveRight() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Move the current piece one position to the right if it doesn't collide there.
moveShapeX(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Move the shape on the X axes
moveShapeY(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Move the shape on the Y axes
MovingPeaks - Class in net.sourceforge.cilib.functions.continuous.dynamic
 
MovingPeaks() - Constructor for class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Creates a new instance of MovingPeaks.
MovingPeaksOfflineErrorMeasurement - Class in net.sourceforge.cilib.pso.dynamic
 
MovingPeaksOfflineErrorMeasurement() - Constructor for class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflineErrorMeasurement
 
MovingPeaksOfflineErrorMeasurement(MovingPeaksOfflineErrorMeasurement) - Constructor for class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflineErrorMeasurement
 
MovingPeaksOfflinePerformanceMeasurement - Class in net.sourceforge.cilib.pso.dynamic
 
MovingPeaksOfflinePerformanceMeasurement() - Constructor for class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflinePerformanceMeasurement
 
MovingPeaksOfflinePerformanceMeasurement(MovingPeaksOfflinePerformanceMeasurement) - Constructor for class net.sourceforge.cilib.pso.dynamic.MovingPeaksOfflinePerformanceMeasurement
 
MSAProblem - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class represents the Optimization Problem to be solved for the MSA (Real representation).
MSAProblem() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
MSEErrorFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.errorfunctions
 
MSEErrorFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
MSEErrorFunction(int, int, double) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
MultiDimensionalArray<E> - Class in net.sourceforge.cilib.container
This class fills the need to create a arbitraty multi-dimensional array structure.
MultiDimensionalArray() - Constructor for class net.sourceforge.cilib.container.MultiDimensionalArray
 
MultiDimensionalArray(int...) - Constructor for class net.sourceforge.cilib.container.MultiDimensionalArray
 
MultimodalFunction1 - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
MultimodalFunction1() - Constructor for class net.sourceforge.cilib.functions.continuous.MultimodalFunction1
Create an instance of MultimodalFunction1.
MultimodalFunction2 - Class in net.sourceforge.cilib.functions.continuous
 
MultimodalFunction2() - Constructor for class net.sourceforge.cilib.functions.continuous.MultimodalFunction2
Create a new instance of MultimodalFunction2.
MultimodalFunction3 - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
MultimodalFunction3() - Constructor for class net.sourceforge.cilib.functions.continuous.MultimodalFunction3
Create a new instance of MultimodalFunction3.
MultimodalFunction4 - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
MultimodalFunction4() - Constructor for class net.sourceforge.cilib.functions.continuous.MultimodalFunction4
Create a new instance of MultimodalFunction4.
MultimodalFunction5 - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
MultimodalFunction5() - Constructor for class net.sourceforge.cilib.functions.continuous.MultimodalFunction5
Create a new instance of MultimodalFunction5.
MultiObjectiveParticle - Class in net.sourceforge.cilib.pso.particle
TODO: Complete this javadoc.
MultiObjectiveParticle() - Constructor for class net.sourceforge.cilib.pso.particle.MultiObjectiveParticle
 
MultipleFitness - Class in net.sourceforge.cilib.measurement.multiple
Deprecated. This class is no longer valid. A combination of the CompositeMeasurement and Fitness should be used instead
MultipleFitness() - Constructor for class net.sourceforge.cilib.measurement.multiple.MultipleFitness
Deprecated. Create an instance of MultipleFitness.
MultipleFitness(MultipleFitness) - Constructor for class net.sourceforge.cilib.measurement.multiple.MultipleFitness
Deprecated. Copy constructor.
MultipleSolutions - Class in net.sourceforge.cilib.measurement.multiple
Deprecated. This class is no longer valid. A combination of the CompositeMeasurement and Solution should be used instead
MultipleSolutions() - Constructor for class net.sourceforge.cilib.measurement.multiple.MultipleSolutions
Deprecated.  
MultipleSolutions(MultipleSolutions) - Constructor for class net.sourceforge.cilib.measurement.multiple.MultipleSolutions
Deprecated.  
MultiplicationOperatorStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
 
MultiplicationOperatorStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.MultiplicationOperatorStrategy
 
multiply(double) - Method in interface net.sourceforge.cilib.math.VectorMath
Multiply a scalar with each component in the Vector.
multiply(double) - Method in class net.sourceforge.cilib.type.types.container.Vector
Multiply a scalar with each component in the Vector.
MultiPopulationBasedAlgorithm - Class in net.sourceforge.cilib.algorithm.population
Algorithm class to describe the notion of aggregated PopulationBasedAlgorithm instances.
MultiPopulationBasedAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Create an instance of MultiPopulationBasedAlgorithm.
MultiPopulationBasedAlgorithm(MultiPopulationBasedAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Create a copy of the provided instance.
MultiPopulationCriterionBasedAlgorithm - Class in net.sourceforge.cilib.algorithm.population
Generic class that represents the case where a Criterion-based MultiPopulationBasedAlgorithm (like VEPSO) is used to solve a Multi-objective problem.
MultiPopulationCriterionBasedAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
MultiPopulationCriterionBasedAlgorithm(MultiPopulationCriterionBasedAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
MultiPopulationFitness - Class in net.sourceforge.cilib.measurement.multiple
 
MultiPopulationFitness() - Constructor for class net.sourceforge.cilib.measurement.multiple.MultiPopulationFitness
 
MultiPopulationFitness(MultiPopulationFitness) - Constructor for class net.sourceforge.cilib.measurement.multiple.MultiPopulationFitness
 
MultistartOptimisationAlgorithm - Class in net.sourceforge.cilib.algorithm
MultistartOptimisationAlgorithm is simply a wrapper.
MultistartOptimisationAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Creates a new instance of MultistartOptimisationAlgorithm.
MultistartOptimisationAlgorithm(MultistartOptimisationAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Create a copy of the provided instance.
mutate(List<? extends Entity>) - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
Perform the mutation operation on the provided list of offspring individuals.
mutate(List<? extends Entity>) - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
Perform the mutation operation on the provided list of offspring individuals.
mutate(List<? extends Entity>) - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
Perform the mutation operation on the provided list of offspring individuals.
mutate(List<? extends Entity>) - Method in class net.sourceforge.cilib.entity.operators.mutation.UniformMutationStrategy
Perform the mutation operation on the provided list of offspring individuals.
MutationOperatorFactory - Class in net.sourceforge.cilib.entity.operators.mutation
Factory to return the correct object based on the given symbol / token.
MutationOperatorStrategy - Interface in net.sourceforge.cilib.entity.operators.mutation
 
MutationStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
 
MutationStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
MutationStrategy(MutationStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 

N

NaryTree<E extends Comparable<? super E> & Cloneable> - Class in net.sourceforge.cilib.type.types.container
Implementation of a Nary Tree data structure.
NaryTree() - Constructor for class net.sourceforge.cilib.type.types.container.NaryTree
Create an empty NaryTree instance.
NaryTree(int) - Constructor for class net.sourceforge.cilib.type.types.container.NaryTree
Create an NaryTree instance with the specified degree.
NaryTree(int, E) - Constructor for class net.sourceforge.cilib.type.types.container.NaryTree
Create a NaryTree instance, with the given degree and key value.
NaryTree(NaryTree<E>) - Constructor for class net.sourceforge.cilib.type.types.container.NaryTree
Copy constructor.
NastyBenchmark - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
NastyBenchmark() - Constructor for class net.sourceforge.cilib.functions.continuous.NastyBenchmark
Create a new instance of NastyBenchmark.
NaturalOrderFitnessComparator<E extends Entity> - Class in net.sourceforge.cilib.entity.comparator
Perform a comparison based on the natural ordering of fitnesses.
NaturalOrderFitnessComparator() - Constructor for class net.sourceforge.cilib.entity.comparator.NaturalOrderFitnessComparator
 
NBestGuideSelectionStrategy - Class in net.sourceforge.cilib.pso.moo.guideselectionstrategies
A concrete implementation of GuideSelectionStrategy where the neighbourhood best position of a particle gets selected as a guide (usually global guide).
NBestGuideSelectionStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.NBestGuideSelectionStrategy
 
NBestGuideSelectionStrategy(NBestGuideSelectionStrategy) - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.NBestGuideSelectionStrategy
 
NearestBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
If a particle oversteps the boundary it gets re-initialised and placed on the overstepped boundary.
NearestBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Create an instance of the constraint with a turbulence probability initially set to 0.0.
NearestBoundaryConstraint(NearestBoundaryConstraint) - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Create a copy of the provided instance.
neighbourhood(Iterator<? extends Entity>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
neighbourhood(Iterator<? extends Entity>) - Method in class net.sourceforge.cilib.entity.topologies.HypercubeTopology
Returns an Iterator over all particles in the neighbourhood of the particle referred to by the given Iterator.
neighbourhood(Iterator<? extends Entity>) - Method in class net.sourceforge.cilib.entity.topologies.LBestTopology
Recalculate the LBestTopology.neighbourhoodSize by updating the ControlParameter and then construct a new iterator to be returned.
neighbourhood(Iterator<? extends Entity>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Returns an Iterator over all particles in the neighbourhood of the particle referred to by the given Iterator.
neighbourhood(Iterator<? extends Entity>) - Method in interface net.sourceforge.cilib.entity.Topology
Returns an Iterator over all particles in the neighbourhood of the particle referred to by the given Iterator.
neighbourhoodBest - Variable in class net.sourceforge.cilib.pso.particle.StandardParticle
 
NeighbourhoodBestSentriesDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
 
NeighbourhoodBestSentriesDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.NeighbourhoodBestSentriesDetectionStrategy
 
NeighbourhoodBestSentriesDetectionStrategy(NeighbourhoodBestSentriesDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.NeighbourhoodBestSentriesDetectionStrategy
 
NeighbourhoodBestSentriesReactionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
 
NeighbourhoodBestSentriesReactionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.NeighbourhoodBestSentriesReactionStrategy
 
NeighbourhoodBestSentriesReactionStrategy(NeighbourhoodBestSentriesReactionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.NeighbourhoodBestSentriesReactionStrategy
 
neighbourhoodBestUpdateStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
NeighbourhoodBestUpdateStrategy - Interface in net.sourceforge.cilib.pso.positionupdatestrategies
Interface specifying the manner in which the neighbourhood best of the Entity is obtained.
net.sourceforge.cilib.algorithm - package net.sourceforge.cilib.algorithm
The Algorithm package provides the generic algorithm foundation for all Algorithm instances.
net.sourceforge.cilib.algorithm.initialisation - package net.sourceforge.cilib.algorithm.initialisation
 
net.sourceforge.cilib.algorithm.population - package net.sourceforge.cilib.algorithm.population
 
net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies - package net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies
 
net.sourceforge.cilib.bioinf.rnaprediction - package net.sourceforge.cilib.bioinf.rnaprediction
 
net.sourceforge.cilib.bioinf.sequencealignment - package net.sourceforge.cilib.bioinf.sequencealignment
 
net.sourceforge.cilib.boa - package net.sourceforge.cilib.boa
 
net.sourceforge.cilib.boa.bee - package net.sourceforge.cilib.boa.bee
 
net.sourceforge.cilib.boa.positionupdatestrategies - package net.sourceforge.cilib.boa.positionupdatestrategies
 
net.sourceforge.cilib.clustering.kmeans - package net.sourceforge.cilib.clustering.kmeans
 
net.sourceforge.cilib.coevolution - package net.sourceforge.cilib.coevolution
 
net.sourceforge.cilib.coevolution.competitors - package net.sourceforge.cilib.coevolution.competitors
 
net.sourceforge.cilib.coevolution.score - package net.sourceforge.cilib.coevolution.score
 
net.sourceforge.cilib.coevolution.score.fitnesscalculation - package net.sourceforge.cilib.coevolution.score.fitnesscalculation
 
net.sourceforge.cilib.coevolution.selection - package net.sourceforge.cilib.coevolution.selection
 
net.sourceforge.cilib.container - package net.sourceforge.cilib.container
 
net.sourceforge.cilib.container.visitor - package net.sourceforge.cilib.container.visitor
 
net.sourceforge.cilib.controlparameter - package net.sourceforge.cilib.controlparameter
A ControlParameter is a generalised parameter type within CIlib.
net.sourceforge.cilib.cooperative - package net.sourceforge.cilib.cooperative
 
net.sourceforge.cilib.cooperative.algorithmiterators - package net.sourceforge.cilib.cooperative.algorithmiterators
 
net.sourceforge.cilib.cooperative.contributionupdatestrategies - package net.sourceforge.cilib.cooperative.contributionupdatestrategies
 
net.sourceforge.cilib.cooperative.fitnessupdatestrategies - package net.sourceforge.cilib.cooperative.fitnessupdatestrategies
 
net.sourceforge.cilib.cooperative.splitstrategies - package net.sourceforge.cilib.cooperative.splitstrategies
 
net.sourceforge.cilib.ec - package net.sourceforge.cilib.ec
 
net.sourceforge.cilib.ec.iterationstrategies - package net.sourceforge.cilib.ec.iterationstrategies
 
net.sourceforge.cilib.entity - package net.sourceforge.cilib.entity
 
net.sourceforge.cilib.entity.comparator - package net.sourceforge.cilib.entity.comparator
 
net.sourceforge.cilib.entity.operators - package net.sourceforge.cilib.entity.operators
 
net.sourceforge.cilib.entity.operators.creation - package net.sourceforge.cilib.entity.operators.creation
 
net.sourceforge.cilib.entity.operators.crossover - package net.sourceforge.cilib.entity.operators.crossover
 
net.sourceforge.cilib.entity.operators.general - package net.sourceforge.cilib.entity.operators.general
 
net.sourceforge.cilib.entity.operators.mutation - package net.sourceforge.cilib.entity.operators.mutation
 
net.sourceforge.cilib.entity.operators.selection - package net.sourceforge.cilib.entity.operators.selection
 
net.sourceforge.cilib.entity.topologies - package net.sourceforge.cilib.entity.topologies
This package contains different topology implementations.
net.sourceforge.cilib.entity.visitor - package net.sourceforge.cilib.entity.visitor
 
net.sourceforge.cilib.functions - package net.sourceforge.cilib.functions
Collection of different types of functions.
net.sourceforge.cilib.functions.activation - package net.sourceforge.cilib.functions.activation
 
net.sourceforge.cilib.functions.clustering - package net.sourceforge.cilib.functions.clustering
 
net.sourceforge.cilib.functions.clustering.clustercenterstrategies - package net.sourceforge.cilib.functions.clustering.clustercenterstrategies
 
net.sourceforge.cilib.functions.clustering.validityindices - package net.sourceforge.cilib.functions.clustering.validityindices
 
net.sourceforge.cilib.functions.continuous - package net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
net.sourceforge.cilib.functions.continuous.decorators - package net.sourceforge.cilib.functions.continuous.decorators
 
net.sourceforge.cilib.functions.continuous.dynamic - package net.sourceforge.cilib.functions.continuous.dynamic
 
net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1 - package net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
 
net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2 - package net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
 
net.sourceforge.cilib.functions.continuous.unconstrained - package net.sourceforge.cilib.functions.continuous.unconstrained
 
net.sourceforge.cilib.functions.discrete - package net.sourceforge.cilib.functions.discrete
 
net.sourceforge.cilib.games.agent - package net.sourceforge.cilib.games.agent
 
net.sourceforge.cilib.games.agent.neural - package net.sourceforge.cilib.games.agent.neural
 
net.sourceforge.cilib.games.agent.state - package net.sourceforge.cilib.games.agent.state
 
net.sourceforge.cilib.games.agent.state.evaluation - package net.sourceforge.cilib.games.agent.state.evaluation
 
net.sourceforge.cilib.games.agent.state.traversal - package net.sourceforge.cilib.games.agent.state.traversal
 
net.sourceforge.cilib.games.game - package net.sourceforge.cilib.games.game
 
net.sourceforge.cilib.games.game.predatorprey - package net.sourceforge.cilib.games.game.predatorprey
 
net.sourceforge.cilib.games.game.predatorprey.init - package net.sourceforge.cilib.games.game.predatorprey.init
 
net.sourceforge.cilib.games.game.scoring - package net.sourceforge.cilib.games.game.scoring
 
net.sourceforge.cilib.games.game.tetris - package net.sourceforge.cilib.games.game.tetris
 
net.sourceforge.cilib.games.game.tetris.shape - package net.sourceforge.cilib.games.game.tetris.shape
 
net.sourceforge.cilib.games.game.tictactoe - package net.sourceforge.cilib.games.game.tictactoe
 
net.sourceforge.cilib.games.items - package net.sourceforge.cilib.games.items
 
net.sourceforge.cilib.games.measurement - package net.sourceforge.cilib.games.measurement
 
net.sourceforge.cilib.games.random - package net.sourceforge.cilib.games.random
 
net.sourceforge.cilib.games.result - package net.sourceforge.cilib.games.result
 
net.sourceforge.cilib.games.states - package net.sourceforge.cilib.games.states
 
net.sourceforge.cilib.hs - package net.sourceforge.cilib.hs
 
net.sourceforge.cilib.math - package net.sourceforge.cilib.math
 
net.sourceforge.cilib.math.random - package net.sourceforge.cilib.math.random
 
net.sourceforge.cilib.math.random.generator - package net.sourceforge.cilib.math.random.generator
 
net.sourceforge.cilib.math.random.generator.quasi - package net.sourceforge.cilib.math.random.generator.quasi
 
net.sourceforge.cilib.measurement - package net.sourceforge.cilib.measurement
 
net.sourceforge.cilib.measurement.generic - package net.sourceforge.cilib.measurement.generic
 
net.sourceforge.cilib.measurement.multiple - package net.sourceforge.cilib.measurement.multiple
 
net.sourceforge.cilib.measurement.single - package net.sourceforge.cilib.measurement.single
 
net.sourceforge.cilib.measurement.single.diversity - package net.sourceforge.cilib.measurement.single.diversity
 
net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies - package net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies
 
net.sourceforge.cilib.measurement.single.diversity.normalisation - package net.sourceforge.cilib.measurement.single.diversity.normalisation
 
net.sourceforge.cilib.moo.archive - package net.sourceforge.cilib.moo.archive
 
net.sourceforge.cilib.moo.archive.constrained - package net.sourceforge.cilib.moo.archive.constrained
 
net.sourceforge.cilib.moo.archive.solutionweighing - package net.sourceforge.cilib.moo.archive.solutionweighing
 
net.sourceforge.cilib.moo.archive.unconstrained - package net.sourceforge.cilib.moo.archive.unconstrained
 
net.sourceforge.cilib.moo.criterion - package net.sourceforge.cilib.moo.criterion
 
net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies - package net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies
 
net.sourceforge.cilib.moo.iterationstrategies - package net.sourceforge.cilib.moo.iterationstrategies
 
net.sourceforge.cilib.neuralnetwork.basicFFNN - package net.sourceforge.cilib.neuralnetwork.basicFFNN
 
net.sourceforge.cilib.neuralnetwork.foundation - package net.sourceforge.cilib.neuralnetwork.foundation
 
net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy - package net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy
 
net.sourceforge.cilib.neuralnetwork.foundation.measurements - package net.sourceforge.cilib.neuralnetwork.foundation.measurements
 
net.sourceforge.cilib.neuralnetwork.foundation.postSimulation - package net.sourceforge.cilib.neuralnetwork.foundation.postSimulation
 
net.sourceforge.cilib.neuralnetwork.generic - package net.sourceforge.cilib.neuralnetwork.generic
 
net.sourceforge.cilib.neuralnetwork.generic.datacontainers - package net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
net.sourceforge.cilib.neuralnetwork.generic.errorfunctions - package net.sourceforge.cilib.neuralnetwork.generic.errorfunctions
 
net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators - package net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators
 
net.sourceforge.cilib.neuralnetwork.generic.neuron - package net.sourceforge.cilib.neuralnetwork.generic.neuron
 
net.sourceforge.cilib.neuralnetwork.generic.topologybuilders - package net.sourceforge.cilib.neuralnetwork.generic.topologybuilders
 
net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors - package net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
 
net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies - package net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies
 
net.sourceforge.cilib.neuralnetwork.testarea - package net.sourceforge.cilib.neuralnetwork.testarea
 
net.sourceforge.cilib.problem - package net.sourceforge.cilib.problem
 
net.sourceforge.cilib.problem.boundaryconstraint - package net.sourceforge.cilib.problem.boundaryconstraint
 
net.sourceforge.cilib.problem.changestrategy - package net.sourceforge.cilib.problem.changestrategy
Dynamic environments need to know when it should be applicable to change the problem.
net.sourceforge.cilib.problem.coevolution - package net.sourceforge.cilib.problem.coevolution
 
net.sourceforge.cilib.problem.dataset - package net.sourceforge.cilib.problem.dataset
 
net.sourceforge.cilib.problem.mappingproblem - package net.sourceforge.cilib.problem.mappingproblem
 
net.sourceforge.cilib.pso - package net.sourceforge.cilib.pso
 
net.sourceforge.cilib.pso.dynamic - package net.sourceforge.cilib.pso.dynamic
 
net.sourceforge.cilib.pso.dynamic.detectionstrategies - package net.sourceforge.cilib.pso.dynamic.detectionstrategies
 
net.sourceforge.cilib.pso.dynamic.responsestrategies - package net.sourceforge.cilib.pso.dynamic.responsestrategies
 
net.sourceforge.cilib.pso.iterationstrategies - package net.sourceforge.cilib.pso.iterationstrategies
 
net.sourceforge.cilib.pso.moo.guideselectionstrategies - package net.sourceforge.cilib.pso.moo.guideselectionstrategies
 
net.sourceforge.cilib.pso.moo.guideupdatestrategies - package net.sourceforge.cilib.pso.moo.guideupdatestrategies
 
net.sourceforge.cilib.pso.niching - package net.sourceforge.cilib.pso.niching
 
net.sourceforge.cilib.pso.particle - package net.sourceforge.cilib.pso.particle
 
net.sourceforge.cilib.pso.particle.initialisation - package net.sourceforge.cilib.pso.particle.initialisation
 
net.sourceforge.cilib.pso.positionupdatestrategies - package net.sourceforge.cilib.pso.positionupdatestrategies
 
net.sourceforge.cilib.pso.velocityupdatestrategies - package net.sourceforge.cilib.pso.velocityupdatestrategies
 
net.sourceforge.cilib.simulator - package net.sourceforge.cilib.simulator
 
net.sourceforge.cilib.stoppingcondition - package net.sourceforge.cilib.stoppingcondition
 
net.sourceforge.cilib.type - package net.sourceforge.cilib.type
 
net.sourceforge.cilib.type.creator - package net.sourceforge.cilib.type.creator
 
net.sourceforge.cilib.type.parser - package net.sourceforge.cilib.type.parser
 
net.sourceforge.cilib.type.types - package net.sourceforge.cilib.type.types
 
net.sourceforge.cilib.type.types.container - package net.sourceforge.cilib.type.types.container
 
net.sourceforge.cilib.util - package net.sourceforge.cilib.util
 
net.sourceforge.cilib.util.calculator - package net.sourceforge.cilib.util.calculator
 
net.sourceforge.cilib.util.selection - package net.sourceforge.cilib.util.selection
 
net.sourceforge.cilib.util.selection.ordering - package net.sourceforge.cilib.util.selection.ordering
 
net.sourceforge.cilib.util.selection.recipes - package net.sourceforge.cilib.util.selection.recipes
 
net.sourceforge.cilib.util.selection.weighing - package net.sourceforge.cilib.util.selection.weighing
 
net.sourceforge.cilib.util.selection.weighing.entity - package net.sourceforge.cilib.util.selection.weighing.entity
 
net.sourceforge.cilib.xml - package net.sourceforge.cilib.xml
 
NetworkBasedSeedSelectionStrategy - Class in net.sourceforge.cilib.math.random.generator
Determine the initial seed value by manipulating the current network address.
NetworkBasedSeedSelectionStrategy() - Constructor for class net.sourceforge.cilib.math.random.generator.NetworkBasedSeedSelectionStrategy
 
Neumaier3 - Class in net.sourceforge.cilib.functions.continuous
 
Neumaier3() - Constructor for class net.sourceforge.cilib.functions.continuous.Neumaier3
Creates a new instance of Neumaier.
NeuralAgent - Class in net.sourceforge.cilib.games.agent
 
NeuralAgent() - Constructor for class net.sourceforge.cilib.games.agent.NeuralAgent
 
NeuralAgent(NeuralAgent) - Constructor for class net.sourceforge.cilib.games.agent.NeuralAgent
 
NeuralNetworkController - Class in net.sourceforge.cilib.neuralnetwork.foundation
Deprecated. This class is no longer viable - Please see EvaluationMediator
NeuralNetworkController() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
NeuralNetworkController(NeuralNetworkController) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
NeuralNetworkData - Interface in net.sourceforge.cilib.neuralnetwork.foundation
 
NeuralNetworkDataIterator - Interface in net.sourceforge.cilib.neuralnetwork.foundation
TODO: Complete the javadoc.
NeuralNetworkProblem - Class in net.sourceforge.cilib.neuralnetwork.foundation
Deprecated. This class is no longer really valid.
NeuralNetworkProblem() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
NeuralNetworkProblem(NeuralNetworkProblem) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
NeuralNetworkRetrievalVisitor - Class in net.sourceforge.cilib.neuralnetwork.foundation
 
NeuralNetworkRetrievalVisitor() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkRetrievalVisitor
 
neuralNetworkTopology - Variable in class net.sourceforge.cilib.games.agent.NeuralAgent
 
NeuralNetworkTopology - Interface in net.sourceforge.cilib.neuralnetwork.foundation
 
NeuralOutputInterpretationStrategy - Class in net.sourceforge.cilib.games.agent.neural
 
NeuralOutputInterpretationStrategy() - Constructor for class net.sourceforge.cilib.games.agent.neural.NeuralOutputInterpretationStrategy
 
NeuralPredatorOutputStrategy - Class in net.sourceforge.cilib.games.game.predatorprey
 
NeuralPredatorOutputStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.NeuralPredatorOutputStrategy
 
NeuralPreyOutputStrategy - Class in net.sourceforge.cilib.games.game.predatorprey
 
NeuralPreyOutputStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.NeuralPreyOutputStrategy
 
NeuralStateEvaluator - Class in net.sourceforge.cilib.games.agent.state.evaluation
 
NeuralStateEvaluator() - Constructor for class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
 
NeuralStateEvaluator(NeuralStateEvaluator) - Constructor for class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
Copy Constructor
NeuralStateInputStrategy - Class in net.sourceforge.cilib.games.agent.neural
 
NeuralStateInputStrategy() - Constructor for class net.sourceforge.cilib.games.agent.neural.NeuralStateInputStrategy
 
NeuronConfig - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
 
NeuronConfig() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
NeuronConfig(int, Type, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
NeuronConfig(NeuronConfig[], Weight[], boolean[], int, Weight, Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
NeuronFunction - Interface in net.sourceforge.cilib.neuralnetwork.generic.neuron
This is the interface that a Neuron output function needs to conform to.
newAlgorithm() - Method in interface net.sourceforge.cilib.algorithm.AlgorithmFactory
Returns a newly constructed algorithm.
newAlgorithm() - Method in class net.sourceforge.cilib.xml.XMLAlgorithmFactory
Returns a newly constructed algorithm.
newInstance(Double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
newInstance(Double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
newInstance(Double) - Method in interface net.sourceforge.cilib.problem.Fitness
Creation method that maintains Fitness object immutability by returning a new instance of the current class type.
newInstance(Double) - Method in class net.sourceforge.cilib.problem.InferiorFitness
Creation method that maintains Fitness object immutability by returning a new instance of the current class type.
newInstance(Double) - Method in class net.sourceforge.cilib.problem.MaximisationFitness
Creation method that maintains Fitness object immutability by returning a new instance of the current class type.
newInstance(Double) - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Creation method that maintains Fitness object immutability by returning a new instance of the current class type.
newInstance(Double) - Method in class net.sourceforge.cilib.problem.MOFitness
Creation method that maintains Fitness object immutability by returning a new instance of the current class type.
newMeasurement() - Method in interface net.sourceforge.cilib.measurement.MeasurementFactory
 
newMeasurement() - Method in class net.sourceforge.cilib.xml.XMLMeasurementFactory
 
newObject() - Method in class net.sourceforge.cilib.xml.XMLObjectFactory
Constructs a new Object based on the underlying XML object description.
newProblem() - Method in interface net.sourceforge.cilib.problem.ProblemFactory
Returns a newly contructed problem.
newProblem() - Method in class net.sourceforge.cilib.xml.XMLProblemFactory
 
newStoppingCondition() - Method in interface net.sourceforge.cilib.stoppingcondition.StoppingConditionFactory
 
newStoppingCondition() - Method in class net.sourceforge.cilib.xml.XMLStoppingConditionFactory
Returns a newly constructed StoppingCondition.
newToken(int, String) - Static method in class net.sourceforge.cilib.type.parser.Token
Returns a new Token object, by default.
newToken(int) - Static method in class net.sourceforge.cilib.type.parser.Token
 
next() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
next() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Gets the next element in the list.
next() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Gets the next element in the list.
next(int) - Method in class net.sourceforge.cilib.math.random.generator.KnuthSubtractive
next(int) - Method in class net.sourceforge.cilib.math.random.generator.MersenneTwister
next(int) - Method in class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
next(int) - Method in class net.sourceforge.cilib.math.random.generator.RANLUX
next(int) - Method in class net.sourceforge.cilib.math.random.generator.Tausworthe
 
next(int) - Method in class net.sourceforge.cilib.math.random.generator.ZiffGFSR4
next() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
next() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
next - Variable in class net.sourceforge.cilib.type.parser.Token
A reference to the next regular (non-special) token from the input stream.
next() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree.TreeIterator
nextDouble() - Method in class net.sourceforge.cilib.math.random.generator.MersenneTwister
nextIndex() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Returns the index of the element that would be returned by a subsequent call to next.
nextNeuron() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
nextNeuron() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
nextPoint() - Method in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
nextPoint() - Method in class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
Niche - Class in net.sourceforge.cilib.pso.niching
 
Niche() - Constructor for class net.sourceforge.cilib.pso.niching.Niche
 
NicheCreationStrategy - Interface in net.sourceforge.cilib.pso.niching
 
NichePSOF1 - Class in net.sourceforge.cilib.functions.continuous
 
NichePSOF1() - Constructor for class net.sourceforge.cilib.functions.continuous.NichePSOF1
 
NNError - Interface in net.sourceforge.cilib.neuralnetwork.foundation
TODO: Complete this javadoc.
NNFunctionAdapter - Class in net.sourceforge.cilib.neuralnetwork.testarea
TODO: Complete this javadoc.
NNFunctionAdapter() - Constructor for class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
NNOutput - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
Measurement to determine the output of a Neural Network.
NNOutput() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
NNOutput(NNOutput) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
NNPattern - Interface in net.sourceforge.cilib.neuralnetwork.foundation
TODO: Complete this javadoc.
NoChangeStrategy - Class in net.sourceforge.cilib.problem.changestrategy
Environmental change strategy for problems that does not allow a change to occur.
NoChangeStrategy() - Constructor for class net.sourceforge.cilib.problem.changestrategy.NoChangeStrategy
 
Node - Interface in net.sourceforge.cilib.type.parser
 
nodeArity() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
nodeCreated() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
noInputs - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
noInputs - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
NoisyFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
 
NoisyFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
Create an instance of the decorator and set the domain to "R" by default.
NonParametricClusteringFunction - Class in net.sourceforge.cilib.functions.clustering
This class makes use of the helper/member functions defined and implemented in {@linkplain ClusteringFitnessFunction) to calculate a non-parameterised fitness of a particular clustering in the calculateFitness method.
NonParametricClusteringFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.NonParametricClusteringFunction
 
noOutputs - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
noPatterns - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
NoProgress - Class in net.sourceforge.cilib.simulator
Progress listener that does not create any output whatsoever.
NoProgress() - Constructor for class net.sourceforge.cilib.simulator.NoProgress
 
norm() - Method in interface net.sourceforge.cilib.math.VectorMath
Calculate the norm of this Vector object.
norm() - Method in class net.sourceforge.cilib.type.types.container.Vector
Calculate the norm of this Vector object.
normalisationParameter - Variable in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
NormalisationParameter - Class in net.sourceforge.cilib.measurement.single.diversity.normalisation
TODO: Complete this javadoc.
NormalisationParameter() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
normalisationParameter - Variable in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
normalise(double) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This method is used to calculate the normalised distance of a value in the domain of the problem.
NormalisedDiversity - Class in net.sourceforge.cilib.measurement.single
TODO: Rather let this extend Diversity, call super.getValue, but how to type-cast this back to a double?
NormalisedDiversity(NormalisedDiversity) - Constructor for class net.sourceforge.cilib.measurement.single.NormalisedDiversity
Copy constructor.
normalisedOSVector(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
normalize() - Method in interface net.sourceforge.cilib.math.VectorMath
Create a unit vector from the current Vector.
normalize() - Method in class net.sourceforge.cilib.type.types.container.Vector
Create a unit vector from the current Vector.
notifyObservers() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
nrEvaluationsPerEpoch - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
NucleotidePair - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
NucleotidePair(int, char, int, char) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
NucleotidePair(int, int) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
 
nucleotides - Variable in class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
 
NucleotideString - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
nucleotideString - Variable in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
number() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
NUMBER - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
NumberOfClustersFormed - Class in net.sourceforge.cilib.measurement.single
This measurement measures the number of clusters that were formed during a particular clustering.
NumberOfClustersFormed() - Constructor for class net.sourceforge.cilib.measurement.single.NumberOfClustersFormed
 
NumberOfClustersFormed(NumberOfClustersFormed) - Constructor for class net.sourceforge.cilib.measurement.single.NumberOfClustersFormed
 
numberOfEvaluations - Variable in class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
numberOfOpponents - Variable in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
numberOfSentries - Variable in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
numberPatternsCorrect - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
numberPatternsIncorrect - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
Numeric - Class in net.sourceforge.cilib.type.types
Definition of the Numeric type.
Numeric() - Constructor for class net.sourceforge.cilib.type.types.Numeric
 

O

ObjectiveAssignmentStrategy - Interface in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies
Used by MultiPopulationCriterionBasedAlgorithm to assign the different sub-objectives in a MOOptimisationProblem to specific PopulationBasedAlgorithms.
Observer - Interface in net.sourceforge.cilib.neuralnetwork.generic
 
OnePointCrossoverStrategy - Class in net.sourceforge.cilib.entity.operators.crossover
 
OnePointCrossoverStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.OnePointCrossoverStrategy
 
OnePointCrossoverStrategy(OnePointCrossoverStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.crossover.OnePointCrossoverStrategy
 
OnlookerBee - Class in net.sourceforge.cilib.boa.bee
Represents an onlooker bee in the hive.
OnlookerBee() - Constructor for class net.sourceforge.cilib.boa.bee.OnlookerBee
Default constructor.
OnlookerBee(AbstractBee) - Constructor for class net.sourceforge.cilib.boa.bee.OnlookerBee
 
OnlookerBee(OnlookerBee) - Constructor for class net.sourceforge.cilib.boa.bee.OnlookerBee
Copy constructor.
openNodeScope(Node) - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
Operator - Interface in net.sourceforge.cilib.entity.operators
Interface to define all operators within the general structure of CIlib.
operatorPipeline - Variable in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
 
OpponentPoolSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
This strategy is used to select the pool of potential opponents for a competitive coevolution algorithm.
OpponentPoolSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.OpponentPoolSelectionStrategy
 
OpponentPoolSelectionStrategy(OpponentPoolSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.OpponentPoolSelectionStrategy
 
opponentSelectionStrategy - Variable in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
OpponentSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
This class determins how opponents are selected from the opponent pool.
OpponentSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
OpponentSelectionStrategy(OpponentSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
optimisationProblem - Variable in class net.sourceforge.cilib.algorithm.Algorithm
 
OptimisationProblem - Interface in net.sourceforge.cilib.problem
Optimisation problems are characterized by a domain that specifies the search space and a fitness given a potential solution.
OptimisationProblemAdapter - Class in net.sourceforge.cilib.problem
This is a convenience class that keeps track of the number of fitness evaluations.
OptimisationProblemAdapter() - Constructor for class net.sourceforge.cilib.problem.OptimisationProblemAdapter
 
OptimisationProblemAdapter(OptimisationProblemAdapter) - Constructor for class net.sourceforge.cilib.problem.OptimisationProblemAdapter
 
OptimisationSolution - Class in net.sourceforge.cilib.problem
This class represents a solution to an OptimisationProblem.
OptimisationSolution(Type, Fitness) - Constructor for class net.sourceforge.cilib.problem.OptimisationSolution
Constructs a new instance of OptimisationSolution.
OptimiserStalled - Class in net.sourceforge.cilib.stoppingcondition
used to check if optimisation algorithm has stalled.
OptimiserStalled() - Constructor for class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Creates a new instance of OptimiserStalled.
OptimiserStalled(OptimiserStalled) - Constructor for class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Copy constructor.
order(List<Selection.Entry<E>>) - Method in interface net.sourceforge.cilib.util.selection.ordering.Ordering
Apply the ordering on the provided list.
order(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.ordering.ProportionalOrdering
Apply the ordering on the provided list.
order(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.ordering.RandomOrdering
Apply the ordering on the provided list.
order(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.ordering.ReverseOrdering
Apply the ordering on the provided list.
order(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.ordering.RingBasedOrdering
Apply the ordering on the provided list.
order(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.ordering.SortedOrdering
Apply the ordering on the provided list.
orderBy(Ordering<E>) - Method in class net.sourceforge.cilib.util.selection.Selection
Apply the provided ordering on the current selection.
orderBy(Ordering<E>) - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
Ordering<E> - Interface in net.sourceforge.cilib.util.selection.ordering
An ordering is a construct to define how a list of elements should be ordered.
outputActivationFunction - Variable in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
 
outputInterpretationStrategy - Variable in class net.sourceforge.cilib.games.agent.NeuralAgent
 
outputSensitivityThreshold - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
ownPopulationID - Variable in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 

P

Pair<K extends Comparable<? super K>,V> - Class in net.sourceforge.cilib.container
Simple structure to associate a key to a value.
Pair() - Constructor for class net.sourceforge.cilib.container.Pair
Default constructor.
Pair(K, V) - Constructor for class net.sourceforge.cilib.container.Pair
Construct a Pair with the given key and value.
Pair(Pair<K, V>) - Constructor for class net.sourceforge.cilib.container.Pair
Copy constructor.
PAM250SoP - Class in net.sourceforge.cilib.bioinf.sequencealignment
This class implements the Sum Of Pairs scoring function that uses PAM250 substitutions matrices that give scores for proteins in a biologically meaningful manner.
PAM250SoP() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.PAM250SoP
 
parameter - Variable in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
 
parameter - Variable in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
 
ParametricClusteringFunction - Class in net.sourceforge.cilib.functions.clustering
This class makes use of the helper/member functions defined and implemented in ClusteringFitnessFunction to calculate a parameterised fitness of a particular clustering in the calculateFitness method.
ParametricClusteringFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
 
ParametricWithQuantisationErrorFunction - Class in net.sourceforge.cilib.functions.clustering
This class makes use of the helper/member functions defined and implemented in {@linkplain ClusteringFitnessFunction) to calculate an improved parameterised fitness of a particular clustering in the calculateFitness method.
ParametricWithQuantisationErrorFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
Create a new instance of ParametricWithQuantisationErrorFunction.
parent - Variable in class net.sourceforge.cilib.type.parser.SimpleNode
 
ParetoOptimalFront - Class in net.sourceforge.cilib.measurement.multiple
Measures the set of non-dominated objective vectors withing an archive.
ParetoOptimalFront() - Constructor for class net.sourceforge.cilib.measurement.multiple.ParetoOptimalFront
 
ParetoOptimalFront(ParetoOptimalFront) - Constructor for class net.sourceforge.cilib.measurement.multiple.ParetoOptimalFront
 
ParetoOptimalSet - Class in net.sourceforge.cilib.measurement.multiple
Measures the set of non-dominated decision vectors within an archive.
ParetoOptimalSet() - Constructor for class net.sourceforge.cilib.measurement.multiple.ParetoOptimalSet
 
ParetoOptimalSet(ParetoOptimalSet) - Constructor for class net.sourceforge.cilib.measurement.multiple.ParetoOptimalSet
 
parse(String) - Static method in class net.sourceforge.cilib.type.parser.DomainParser
 
parseDataSet() - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Parse the dataset, building up a list containing all the patterns in the dataset.
ParseException - Exception in net.sourceforge.cilib.type.parser
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception net.sourceforge.cilib.type.parser.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception net.sourceforge.cilib.type.parser.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception net.sourceforge.cilib.type.parser.ParseException
Constructor with message.
parser - Variable in class net.sourceforge.cilib.type.parser.SimpleNode
 
PartialReinitialisationResponseStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
 
PartialReinitialisationResponseStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
PartialReinitialisationResponseStrategy(PartialReinitialisationResponseStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
ParticipatingAlgorithm - Interface in net.sourceforge.cilib.cooperative
Any algorithm that implements this interface can be used as a participant in any Cooperative Algorithm.
Particle - Interface in net.sourceforge.cilib.entity
Definition of a particle.
ParticleBoundViolations - Class in net.sourceforge.cilib.measurement.single
Calculates the average number of particles in the current swarm that violates boundary constraints.
ParticleBoundViolations() - Constructor for class net.sourceforge.cilib.measurement.single.ParticleBoundViolations
Creates a new instance of ParticleBoundViolations.
ParticleBoundViolations(ParticleBoundViolations) - Constructor for class net.sourceforge.cilib.measurement.single.ParticleBoundViolations
Copy constructor.
ParticleDecorator - Class in net.sourceforge.cilib.pso.particle
 
ParticleDecorator() - Constructor for class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
ParticleDecorator(Particle) - Constructor for class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
ParticlePositions - Class in net.sourceforge.cilib.measurement.single
 
ParticlePositions() - Constructor for class net.sourceforge.cilib.measurement.single.ParticlePositions
Default constructor.
ParticlePositions(ParticlePositions) - Constructor for class net.sourceforge.cilib.measurement.single.ParticlePositions
Copy constructor.
ParticleReevaluationResponseStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
Deprecated. Rather use ReevaluationReactionStrategy
ParticleReevaluationResponseStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ParticleReevaluationResponseStrategy
Deprecated.  
ParticleReevaluationResponseStrategy(ParticleReevaluationResponseStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ParticleReevaluationResponseStrategy
Deprecated.  
ParticleVisitor - Class in net.sourceforge.cilib.pso.particle
 
ParticleVisitor() - Constructor for class net.sourceforge.cilib.pso.particle.ParticleVisitor
 
patternExpression - Variable in class net.sourceforge.cilib.problem.dataset.DataSet
Deprecated. 
patterns - Variable in class net.sourceforge.cilib.problem.dataset.AssociatedPairDataSetBuilder
 
PbestBoundViolations - Class in net.sourceforge.cilib.measurement.single
Calculates the average number of personal best positions in the current swarm that violates boundary constraints.
PbestBoundViolations() - Constructor for class net.sourceforge.cilib.measurement.single.PbestBoundViolations
Creates a new instance of PbestBoundViolations.
PbestBoundViolations(PbestBoundViolations) - Constructor for class net.sourceforge.cilib.measurement.single.PbestBoundViolations
Copy constructor.
PBestGuideSelectionStrategy - Class in net.sourceforge.cilib.pso.moo.guideselectionstrategies
A concrete implementation of GuideSelectionStrategy where the personal best position of a particle gets selected as a guide (usually local guide).
PBestGuideSelectionStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.PBestGuideSelectionStrategy
 
PBestGuideSelectionStrategy(PBestGuideSelectionStrategy) - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.PBestGuideSelectionStrategy
 
peak - Variable in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
peek() - Method in class net.sourceforge.cilib.algorithm.AlgorithmStack
Get the Algorithm that is currently at the top of the stack.
peekNode() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
PercentageComplete - Class in net.sourceforge.cilib.measurement.generic
 
PercentageComplete() - Constructor for class net.sourceforge.cilib.measurement.generic.PercentageComplete
Creates a new instance of PercentageComplete.
PercentageComplete(PercentageComplete) - Constructor for class net.sourceforge.cilib.measurement.generic.PercentageComplete
 
percentageCorrect - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
PercentageWonFitnessCalculationStrategy - Class in net.sourceforge.cilib.coevolution.score.fitnesscalculation
This class uses the percentage games won as the Fitness value
PercentageWonFitnessCalculationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.PercentageWonFitnessCalculationStrategy
 
PercentageWonFitnessCalculationStrategy(PercentageWonFitnessCalculationStrategy) - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.PercentageWonFitnessCalculationStrategy
 
percentCan - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
percentCan - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
percentGen - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
percentGen - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
percentTrain - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
percentTrain - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
percentVal - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
PerElementReinitialisation - Class in net.sourceforge.cilib.problem.boundaryconstraint
Reinitialise each element within the provided Type element if it is no longer within the valid search space.
PerElementReinitialisation() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.PerElementReinitialisation
 
PerfectSplitStrategy - Class in net.sourceforge.cilib.cooperative.splitstrategies
Split an OptimisationProblem into sub-problems of equal size/dimension.
PerfectSplitStrategy() - Constructor for class net.sourceforge.cilib.cooperative.splitstrategies.PerfectSplitStrategy
 
PerformanceEvaluationOptimizationProblem - Class in net.sourceforge.cilib.problem.coevolution
 
PerformanceEvaluationOptimizationProblem() - Constructor for class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
PerformanceEvaluationOptimizationProblem(PerformanceEvaluationOptimizationProblem) - Constructor for class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
Copy constructor
performCrossOver() - Method in class net.sourceforge.cilib.ec.FEP
Deprecated.  
performFitnessEvaluation(Topology<Individual>) - Method in class net.sourceforge.cilib.ec.FEP
Deprecated.  
performInitialisation() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Perform the needed initialisation required before the execution of the algorithm starts.
performInitialisation() - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Perform the needed initialisation required before the execution of the algorithm starts.
performInitialisation() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
performInitialisation() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAPSO
Perform the required initialisation for the algorithm.
performInitialisation() - Method in class net.sourceforge.cilib.boa.ABC
Perform the needed initialisation required before the execution of the algorithm starts.
performInitialisation() - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
This initialisation of the centroids is handled by the chosen CentroidsInitialisationStrategy.
performInitialisation() - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
initialises every population.
performInitialisation() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
performInitialisation() - Method in class net.sourceforge.cilib.ec.EC
Perform the needed initialisation required before the execution of the algorithm starts.
performInitialisation() - Method in class net.sourceforge.cilib.ec.FEP
Deprecated. Perform the initialisation of the algorithm.
performInitialisation() - Method in class net.sourceforge.cilib.hs.HS
Perform the needed initialisation required before the execution of the algorithm starts.
performInitialisation() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
performInitialisation() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
performInitialisation() - Method in class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
performInitialisation() - Method in class net.sourceforge.cilib.pso.niching.Niche
 
performInitialisation() - Method in class net.sourceforge.cilib.pso.PSO
Perform the required initialisation for the algorithm.
performIteration() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Perform the actions of the current Algorithm for a single iteration.
performIteration(E) - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration(E) - Method in interface net.sourceforge.cilib.algorithm.population.IterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration(CoevolutionAlgorithm) - Method in class net.sourceforge.cilib.coevolution.CoevolutionIterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration(PSO) - Method in class net.sourceforge.cilib.coevolution.CoevolutionSynchronousIterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration(CoevolutionAlgorithm) - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration() - Method in class net.sourceforge.cilib.ec.FEP
Deprecated.  
performIteration(EC) - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Perform an iteration of the DE algorithm defined as the DE/x/y/z implementation.
performIteration(EC) - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Perform the iteration of the PopulationBasedAlgorithm.
performIteration(E) - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
performIteration(EvaluationMediator) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.BatchTrainingSetEpochStrategy
 
performIteration(EvaluationMediator) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.EmptyEpochStrategy
Perform the iteration of the provided Neural Network.
performIteration(EvaluationMediator) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.EpochStrategy
Perform the iteration of the provided Neural Network.
performIteration(EvaluationMediator) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.StochasticTrainingGeneralisationEpochStrategy
 
performIteration(E) - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
 
performIteration(PSO) - Method in class net.sourceforge.cilib.pso.iterationstrategies.ASynchronousIterationStrategy
This is an ASynchronous strategy:
performIteration(PSO) - Method in class net.sourceforge.cilib.pso.iterationstrategies.SynchronousIterationStrategy
This is an ASynchronous strategy:
performLearning() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
performMapping(Matrix<Double>, Vector, Matrix<Double>) - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearMappingProblem
This function performs the actual mapping.
performMapping(Matrix<Double>, Vector, Matrix<Double>) - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
This function is there to perform the mapping.
performMeasurement() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.postSimulation.PostMeasurementSuite
 
performNextGenerationFormation() - Method in class net.sourceforge.cilib.ec.FEP
Deprecated.  
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.CompositeOperator
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.creation.RandCreationStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionBinomialCrossover
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.crossover.DifferentialEvolutionExponentialCrossover
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.crossover.OnePointCrossoverStrategy
 
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.crossover.UniformCrossoverStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
Perform the TopologyLoopingOperator by looping over the topology and delegate the operation to the wrapped operator.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.mutation.UniformMutationStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in interface net.sourceforge.cilib.entity.operators.Operator
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
 
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
Perform the selection procedure.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.selection.RandomSelectionStrategy
 
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.selection.RouletteWheelSelectionStrategy
Perform the operator operation given the current TopologyHolder.
performOperation(TopologyHolder) - Method in class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Perform the operator operation given the current TopologyHolder.
performReaction(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ArchiveReevaluationResponseStrategy
 
performReaction(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.CompetitiveCoevolutionParticleReevaluationResponseStrategy
This is the method responsible for responding that should be overridden by sub-classes.
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Respond by firstly reinitializing a specified number of entities and then reevaluating another specified number of entities.
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
This is the method responsible for responding that should be overridden by sub-classes.
performReaction(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.NeighbourhoodBestSentriesReactionStrategy
 
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
Respond to environment change by re-evaluating each particle's position, personal best and neighbourhood best, and reinitialising the positions of a specified percentage of particles.
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ParticleReevaluationResponseStrategy
Deprecated. Re-evaluate each particle's position, personal best and neighbourhood best.
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Just reevaluate the entities inside the topology.
performReaction(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Reinitialize the entities inside the topology.
performUninitialisation() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Perform the needed unintialisation steps after the algorithm completes it's execution.
performUninitialisation() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
performUninitialisation() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
performUninitialisation() - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
PeriodicBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
If a particle oversteps the upper boundary it gets re-initialised and placed near the lower boundary and vice versa.
PeriodicBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.PeriodicBoundaryConstraint
 
PeriodicDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
 
PeriodicDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.PeriodicDetectionStrategy
 
PeriodicDetectionStrategy(EnvironmentChangeDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.PeriodicDetectionStrategy
 
permutation(double, double) - Static method in class net.sourceforge.cilib.math.Maths
In combinatorics, a permutation is usually understood to be a sequence containing each element from a finite set once, and only once.
personalBestUpdateStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
PersonalBestUpdateStrategy - Interface in net.sourceforge.cilib.pso.positionupdatestrategies
Update the personal best of the particle.
pf - Variable in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
PhenotypeUpdateStrategy - Interface in net.sourceforge.cilib.ec
 
PierreDellacherieTetrisEvaluator - Class in net.sourceforge.cilib.games.game.tetris
 
PierreDellacherieTetrisEvaluator() - Constructor for class net.sourceforge.cilib.games.game.tetris.PierreDellacherieTetrisEvaluator
 
playerID - Variable in class net.sourceforge.cilib.games.agent.Agent
 
PlayerItem - Class in net.sourceforge.cilib.games.items
any game item controlled by a player
PlayerItem(int) - Constructor for class net.sourceforge.cilib.games.items.PlayerItem
 
PlayerItem(int, Enum<?>) - Constructor for class net.sourceforge.cilib.games.items.PlayerItem
 
PlayerItem(PlayerItem) - Constructor for class net.sourceforge.cilib.games.items.PlayerItem
 
players - Variable in class net.sourceforge.cilib.games.game.Game
 
playGame(boolean) - Method in class net.sourceforge.cilib.games.game.Game
initialize and play the game until the end conditions are met while recording any playing information.
playGame() - Method in class net.sourceforge.cilib.games.game.Game
 
playGame(int, EntityScore) - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
This method should be called after all the players have been initialized for this game the required amount of games are played and the scores are stored
plus(Vector) - Method in interface net.sourceforge.cilib.math.VectorMath
Adding this Vector to another will result in a resultant Vector.
plus(Vector) - Method in class net.sourceforge.cilib.type.types.container.Vector
Adding this Vector to another will result in a resultant Vector.
pop() - Method in class net.sourceforge.cilib.algorithm.AlgorithmStack
Remove the current top of the stack and return it.
popNode() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
populateData(ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
populateData(ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DataDistributionStrategy
 
populateData(ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>, ArrayList<NNPattern>) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
PopulationBasedAlgorithm - Class in net.sourceforge.cilib.algorithm.population
Base class for all algorithms that manage a collection of entities in some manner.
PopulationBasedAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
 
PopulationBasedAlgorithm(PopulationBasedAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
 
populationCenter - Variable in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
PopulationCompetitorList - Class in net.sourceforge.cilib.coevolution.competitors
This class represents a list of Competitor's with the same populationID
PopulationCompetitorList(int) - Constructor for class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
 
PopulationCompetitorList(int, List<Competitor>) - Constructor for class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
 
PopulationCompetitorList(PopulationCompetitorList) - Constructor for class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
 
PopulationInitialisationStrategy - Class in net.sourceforge.cilib.algorithm.initialisation
Interface describing the manner in which populations are initialised.
PopulationInitialisationStrategy() - Constructor for class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
 
positionInitialisationStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
PositionInitialisationStrategy - Interface in net.sourceforge.cilib.pso.particle.initialisation
TODO: Complete this javadoc.
positionUpdateStrategy - Variable in class net.sourceforge.cilib.boa.bee.AbstractBee
 
positionUpdateStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
PositionUpdateStrategy - Interface in net.sourceforge.cilib.pso.positionupdatestrategies
TODO: Complete this javadoc.
POSITIVE_INTEGER - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
postEpochActions(Object) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
postEpochActions(Object) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.TrainingStrategy
 
postEpochActions(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
PostMeasurementSuite - Class in net.sourceforge.cilib.neuralnetwork.foundation.postSimulation
TODO: Complete this javadoc.
PostMeasurementSuite() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.postSimulation.PostMeasurementSuite
 
PostOrderVisitorDecorator<E> - Class in net.sourceforge.cilib.container.visitor
Simple decorator class that wraps the needed Visitor to make it compatible with Post-Order Traversals in the Containers defined.
PostOrderVisitorDecorator(Visitor<E>) - Constructor for class net.sourceforge.cilib.container.visitor.PostOrderVisitorDecorator
Create a new instance of PostOrderVisitorDecorator, decorating the provided Visitor instance.
postVisit(E) - Method in class net.sourceforge.cilib.container.visitor.PostOrderVisitorDecorator
Post-visit the given element.
postVisit(E) - Method in class net.sourceforge.cilib.container.visitor.PrePostVisitor
Post-visit the given element.
PredatorPreyGame - Class in net.sourceforge.cilib.games.game.predatorprey
 
PredatorPreyGame() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
PredatorPreyGame(PredatorPreyGame) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
PredatorPreyGame(PredatorPreyGame, ListGameState) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
PredatorPreyGameScoringStrategy - Class in net.sourceforge.cilib.games.game.predatorprey
 
PredatorPreyGameScoringStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGameScoringStrategy
 
PredatorPreyNeuralInputStrategy - Class in net.sourceforge.cilib.games.game.predatorprey
 
PredatorPreyNeuralInputStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyNeuralInputStrategy
 
PredPreyPositionInitializationStrategy - Class in net.sourceforge.cilib.games.game.predatorprey.init
 
PredPreyPositionInitializationStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.PredPreyPositionInitializationStrategy
 
PredPreyPositionInitializationStrategy(PredPreyPositionInitializationStrategy) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.PredPreyPositionInitializationStrategy
 
preEpochActions(Object) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
preEpochActions(Object) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.TrainingStrategy
 
preEpochActions(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
PreOrderVisitorDecorator<E> - Class in net.sourceforge.cilib.container.visitor
Simple decorator class that wraps the needed Visitor to make it compatible with Pre-Order Traversals in the Containers defined.
PreOrderVisitorDecorator(Visitor<E>) - Constructor for class net.sourceforge.cilib.container.visitor.PreOrderVisitorDecorator
Create a visitor that will pre-visit all nodes.
prepend(E) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Prepend the provided Type to the from of this list.
prepend(AbstractList<E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Add the provided AbstractList to the start of the current list.
prepend(AbstractList, AbstractList) - Static method in class net.sourceforge.cilib.type.types.container.AbstractList
Create a new (cloned) Vector consisting of rhs that has been prepended to lhs.
prepend(AbstractList<Type>) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Add the provided AbstractList to the start of the current list.
prepend(AbstractList<Numeric>) - Method in class net.sourceforge.cilib.type.types.container.Vector
Add all the elements contained within list to the beginning of the current Vector.
PrePostVisitor<E> - Class in net.sourceforge.cilib.container.visitor
Extension of the default Visitor to make pre and post visit operations possible.
PrePostVisitor() - Constructor for class net.sourceforge.cilib.container.visitor.PrePostVisitor
Create a new instance of PrePostVisitor.
prevCharIsCR - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
prevCharIsLF - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
previous() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Gets the previous element in the list.
previous() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Gets the previous element in the list.
previousIndex() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Returns the index of the element that would be returned by a subsequent call to previous.
preVisit(E) - Method in class net.sourceforge.cilib.container.visitor.PreOrderVisitorDecorator
Pre-visit the given element.
preVisit(E) - Method in class net.sourceforge.cilib.container.visitor.PrePostVisitor
Pre-visit the given element.
printPeakData() - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 
printRepresentation() - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
printStatistics() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Print some statistics about the data.
prioritisePattern(NNPattern, NNError) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
prioritisePattern(NNPattern, double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
problem - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
Problem - Interface in net.sourceforge.cilib.problem
This is a common abstraction for all problem classes.
ProblemFactory - Interface in net.sourceforge.cilib.problem
A factory used to produce a Problem must satisfy this interface.
problems - Variable in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
ProblemVisitor - Class in net.sourceforge.cilib.problem
 
ProblemVisitor() - Constructor for class net.sourceforge.cilib.problem.ProblemVisitor
 
ProgressEvent - Class in net.sourceforge.cilib.simulator
A progress event informs the listening party about the percentage complete of the simulation.
ProgressEvent(double) - Constructor for class net.sourceforge.cilib.simulator.ProgressEvent
Creates a new instance of ProgressEvent with a given completion percentage.
ProgressListener - Interface in net.sourceforge.cilib.simulator
This interface must be implemented by any class that wishes to receive progress events.
ProgressText - Class in net.sourceforge.cilib.simulator
Implements a text progress meter.
ProgressText(int) - Constructor for class net.sourceforge.cilib.simulator.ProgressText
Creates new form ProgressFrame.
PropertyBasedFitnessCalculator - Class in net.sourceforge.cilib.util.calculator
 
PropertyBasedFitnessCalculator() - Constructor for class net.sourceforge.cilib.util.calculator.PropertyBasedFitnessCalculator
 
ProportionalControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to return a proportional value.
ProportionalControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Create a new ProportionalControlParameter instance.
ProportionalControlParameter(ProportionalControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
 
ProportionalOrdering<E> - Class in net.sourceforge.cilib.util.selection.ordering
Apply a proportionate ordering.
ProportionalOrdering() - Constructor for class net.sourceforge.cilib.util.selection.ordering.ProportionalOrdering
Create a new instance with an internal MersenneTwister.
ProportionalOrdering(Random) - Constructor for class net.sourceforge.cilib.util.selection.ordering.ProportionalOrdering
Create a new instance with the provided Random.
prototypeError - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
prototypeError - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
prototypeWeight - Variable in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
 
prune() - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
This method needs to be implemented by all subclasses to provide a way in which certain solutions will be removed if the archive grows too big.
prune() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
PSO - Class in net.sourceforge.cilib.pso
An implementation of the standard PSO algorithm.
PSO() - Constructor for class net.sourceforge.cilib.pso.PSO
Creates a new instance of PSO.
PSO(PSO) - Constructor for class net.sourceforge.cilib.pso.PSO
Create a copy of the provided instance.
push(Algorithm) - Method in class net.sourceforge.cilib.algorithm.AlgorithmStack
Push the current Algorithm onto the stack.
pushNode(Node) - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
put(K, V) - Method in class net.sourceforge.cilib.type.types.Blackboard
Put the provided key / value pair into the Blackboard.

Q

Quadric - Class in net.sourceforge.cilib.functions.continuous
 
Quadric() - Constructor for class net.sourceforge.cilib.functions.continuous.Quadric
 
QuadTree - Class in net.sourceforge.cilib.moo.archive.unconstrained
Placeholder class for anybody interrested in implementing this datastructure.
QuadTree() - Constructor for class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
QuantisationErrorFunction - Class in net.sourceforge.cilib.functions.clustering
This class makes use of the helper/member functions defined and implemented in ClusteringFitnessFunction to calculate the Quantisation Error of a particular clustering in the calculateFitness method.
QuantisationErrorFunction() - Constructor for class net.sourceforge.cilib.functions.clustering.QuantisationErrorFunction
 
QuantumPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.dynamic
Position update strategy for QSO (Quantum PSO).
QuantumPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
 
QuantumPositionUpdateStrategy(QuantumPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
 
QuantumVelocityUpdateStrategy - Class in net.sourceforge.cilib.pso.dynamic
Velocity update strategy for QSO (Quantum PSO).
QuantumVelocityUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.QuantumVelocityUpdateStrategy
Create a new instance of QuantumPositionUpdateStrategy.
QuantumVelocityUpdateStrategy(StandardVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.dynamic.QuantumVelocityUpdateStrategy
Create an copy of the provided instance.
Quartic - Class in net.sourceforge.cilib.functions.continuous
The Quartic function.
Quartic() - Constructor for class net.sourceforge.cilib.functions.continuous.Quartic
Create a new instance of Quadric.
QuasiRandom - Class in net.sourceforge.cilib.math.random.generator.quasi
TODO: Need to complete javadoc.
QuasiRandom(long) - Constructor for class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
Queens - Class in net.sourceforge.cilib.functions.discrete
Implementation of the a function to return the fitness of the Queens problem.
Queens() - Constructor for class net.sourceforge.cilib.functions.discrete.Queens
 

R

R - Class in net.sourceforge.cilib.type.creator
 
R() - Constructor for class net.sourceforge.cilib.type.creator.R
 
RadiusVisitor - Class in net.sourceforge.cilib.entity.visitor
Determine the radius of the current topology.
RadiusVisitor() - Constructor for class net.sourceforge.cilib.entity.visitor.RadiusVisitor
 
RandCreationStrategy - Class in net.sourceforge.cilib.entity.operators.creation
 
RandCreationStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.creation.RandCreationStrategy
Create a new instance of CurrentToRandCreationStrategy.
RandCreationStrategy(RandCreationStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.creation.RandCreationStrategy
Copy constructor.
random - Variable in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
Random - Class in net.sourceforge.cilib.math.random.generator
 
Random(long) - Constructor for class net.sourceforge.cilib.math.random.generator.Random
 
RandomAgent - Class in net.sourceforge.cilib.games.agent
This is an agent that chooses a random state as its decision, it will only work on Game's that impliment StateGame
RandomAgent() - Constructor for class net.sourceforge.cilib.games.agent.RandomAgent
 
RandomAgent(Agent) - Constructor for class net.sourceforge.cilib.games.agent.RandomAgent
Copy constructor
RandomAlgorithmIterator<E extends Algorithm> - Class in net.sourceforge.cilib.cooperative.algorithmiterators
Iterate through a list of Algorithms in a random order.
RandomAlgorithmIterator() - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Construct a new RandomAlgorithmIterator.
RandomAlgorithmIterator(List<E>) - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Construct a new RandomAlgorithmIterator for the supplied list.
RandomAlgorithmIterator(RandomAlgorithmIterator) - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Construct a new RandomAlgorithmIterator from the supplied one.
RandomBoundaryConstraint - Class in net.sourceforge.cilib.problem.boundaryconstraint
If a particle oversteps the boundary it gets randomly re-initialised within the boundary and its velocity gets updated.
RandomBoundaryConstraint() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.RandomBoundaryConstraint
 
RandomBoundedInitialVelocityStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
 
RandomBoundedInitialVelocityStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
RandomBoundedInitialVelocityStrategy(RandomBoundedInitialVelocityStrategy) - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
RandomCentroidsInitialisationStrategy - Class in net.sourceforge.cilib.clustering.kmeans
This strategy initializes the centroids of a clustering to random positions in the search space.
RandomCentroidsInitialisationStrategy() - Constructor for class net.sourceforge.cilib.clustering.kmeans.RandomCentroidsInitialisationStrategy
 
RandomDistributionStrategy - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
TODO: Complete this javadoc.
RandomDistributionStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
randomFrom(List<? extends T>, Random) - Static method in class net.sourceforge.cilib.util.selection.Selection
Obtain a random element from the provided list.
randomFrom(List<? extends T>, Random, int) - Static method in class net.sourceforge.cilib.util.selection.Selection
Obtain a random element sublist from the provided list.
randomGenerator - Variable in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
randomGenerator - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
randomGenerator - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
 
randomGenerator - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
 
RandomInitialVelocityStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
 
RandomInitialVelocityStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.RandomInitialVelocityStrategy
 
RandomInitialVelocityStrategy(RandomInitialVelocityStrategy) - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.RandomInitialVelocityStrategy
 
randomise() - Method in class net.sourceforge.cilib.type.types.container.Set
Not supported for this container.
randomiser - Variable in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
 
Randomizable - Interface in net.sourceforge.cilib.type.types
 
randomize(Random) - Method in class net.sourceforge.cilib.type.types.Bit
Randomly choose a new valid for the Bit object.
randomize(Random) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
 
randomize(Random) - Method in class net.sourceforge.cilib.type.types.container.Set
 
randomize(Random) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
 
randomize(Random) - Method in class net.sourceforge.cilib.type.types.container.TypeList
 
randomize(Random) - Method in class net.sourceforge.cilib.type.types.container.Vector
Randomize all the elements contained within the Vector.
randomize(Random) - Method in class net.sourceforge.cilib.type.types.Int
Apply a randomization using the provided Random.
randomize(Random) - Method in class net.sourceforge.cilib.type.types.Long
Apply a randomization using the provided Random.
randomize(Random) - Method in interface net.sourceforge.cilib.type.types.Randomizable
Apply a randomization using the provided Random.
randomize(Random) - Method in class net.sourceforge.cilib.type.types.Real
Re-randomize the Real object based on the upper and lower bounds.
RandomizedPositionInitialisationStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
Deprecated. This class is a temporary measure until we can get the DomainParser working as intended. the idea is to be able to specify particle contents via the string and have the randomness applied on initialisation. A specific example is to use this new string when initialising positions with Polar coordinates for example
RandomizedPositionInitialisationStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.RandomizedPositionInitialisationStrategy
Deprecated.  
randomizer - Variable in class net.sourceforge.cilib.games.states.GameState
 
randomizer - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
randomizeSeeds(int) - Method in class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
Generate a list of seeds with the specified length
RandomizingControlParameter - Class in net.sourceforge.cilib.controlparameter
A control parameter that is defined to return a constant multiplied with a random number.
RandomizingControlParameter() - Constructor for class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Create a new RandomizingControlParameter instance.
RandomizingControlParameter(RandomizingControlParameter) - Constructor for class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Copy constructor.
RandomListSeedingStrategy - Class in net.sourceforge.cilib.games.random
 
RandomListSeedingStrategy() - Constructor for class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
 
RandomListSeedingStrategy(RandomListSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
 
RandomNumber - Class in net.sourceforge.cilib.math.random
This class provides the needed functionality to sample random numbers from different continuous valued distributions.
RandomNumber() - Constructor for class net.sourceforge.cilib.math.random.RandomNumber
Create a RandomNumber instance.
RandomNumber(RandomNumber) - Constructor for class net.sourceforge.cilib.math.random.RandomNumber
 
RandomObjectiveAssignmentStrategy - Class in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies
Randomly assigns the sub-objectives of a MOOptimisationProblem to different PopulationBasedAlgorithms.
RandomObjectiveAssignmentStrategy() - Constructor for class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.RandomObjectiveAssignmentStrategy
 
RandomObjectiveAssignmentStrategy(RandomObjectiveAssignmentStrategy) - Constructor for class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.RandomObjectiveAssignmentStrategy
 
RandomOrdering<E> - Class in net.sourceforge.cilib.util.selection.ordering
Apply a random ordering to the provided list.
RandomOrdering() - Constructor for class net.sourceforge.cilib.util.selection.ordering.RandomOrdering
Create a new instance.
RandomOrdering(Random) - Constructor for class net.sourceforge.cilib.util.selection.ordering.RandomOrdering
Create an instance with the provided Random as the generator class to use.
RandomPredPreyInitializationStrategy - Class in net.sourceforge.cilib.games.game.predatorprey.init
 
RandomPredPreyInitializationStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.RandomPredPreyInitializationStrategy
 
RandomPredPreyInitializationStrategy(PredPreyPositionInitializationStrategy) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.RandomPredPreyInitializationStrategy
Copy constructor
RandomSelection<E> - Class in net.sourceforge.cilib.util.selection.recipes
Perform a random selection from the provided list of elements.
RandomSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.RandomSelection
Create a new instance.
RandomSelection(Random) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RandomSelection
Create a new instance with the provided Random.
RandomSelection(RandomSelection) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RandomSelection
Create a copy of the provided instance.
RandomSelectionStrategy - Class in net.sourceforge.cilib.entity.operators.selection
 
RandomSelectionStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.selection.RandomSelectionStrategy
 
RandomSentriesDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
This class defines a detection strategy that uses a user-specified number of sentry entities and an value to detect whether a change has occured in the environment.
RandomSentriesDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
RandomSentriesDetectionStrategy(RandomSentriesDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
RandomSentryDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
Deprecated. rather use RandomSentriesDetectionStrategy
RandomSentryDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
RandomSentryDetectionStrategy(RandomSentryDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
RandomSentryPointsDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
This class defines a detection strategy that uses a user-specified number of sentry points and an value to detect whether a change has occured in the environment within a number of consecutive iterations.
RandomSentryPointsDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryPointsDetectionStrategy
 
RandomSentryPointsDetectionStrategy(RandomSentryPointsDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryPointsDetectionStrategy
 
RandomWeightInitialiser - Class in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
 
RandomWeightInitialiser() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
range - Variable in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
 
RankBasedSelection<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.recipes
A recipe for Rank based selection.
RankBasedSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Create a new instance.
RankBasedSelection(Comparator<Selection.Entry<E>>) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Create a new instance with the provided Comparator.
RankBasedSelection(RankBasedSelection) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Create a copy of the provided instance.
RANLUX - Class in net.sourceforge.cilib.math.random.generator
This is an implementation of Martin Luescher's second generation double-precision (48-bit) version of the RANLUX generator.
RANLUX() - Constructor for class net.sourceforge.cilib.math.random.generator.RANLUX
Create a new instance of RANLUX.
RANLUX(long) - Constructor for class net.sourceforge.cilib.math.random.generator.RANLUX
Create a new instance of RANLUX with the provided seed value.
Rastrigin - Class in net.sourceforge.cilib.functions.continuous.unconstrained
The rastrigin function.
Rastrigin() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Rastrigin
Create an instance of the Rastrigin function.
readChar() - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Read a character.
readExternal(ObjectInput) - Method in class net.sourceforge.cilib.type.types.Bit
Externalise the current object to the provided ObjectInput.
readExternal(ObjectInput) - Method in class net.sourceforge.cilib.type.types.Int
Read off the provided ObjectInput.
readExternal(ObjectInput) - Method in class net.sourceforge.cilib.type.types.Long
Read off the provided ObjectInput.
readExternal(ObjectInput) - Method in class net.sourceforge.cilib.type.types.Real
Read the Real from the provided ObjectInput.
readExternal(ObjectInput) - Method in class net.sourceforge.cilib.type.types.StringType
Read the contents from a given ObjectInput.
Real - Class in net.sourceforge.cilib.type.types
 
Real() - Constructor for class net.sourceforge.cilib.type.types.Real
Create the instance with a random value.
Real(double) - Constructor for class net.sourceforge.cilib.type.types.Real
Create the instance with the given value.
Real(double, double) - Constructor for class net.sourceforge.cilib.type.types.Real
Create the Real instance with the initial value which is random between lower and upper.
Real(Real) - Constructor for class net.sourceforge.cilib.type.types.Real
Copy construtor.
RealTimeGame - Interface in net.sourceforge.cilib.games.game
 
RealTimePredatorPreyGame - Class in net.sourceforge.cilib.games.game.predatorprey
 
RealTimePredatorPreyGame() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
 
RealTimePredatorPreyGame(RealTimePredatorPreyGame) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
 
RealTimePredatorPreyGame(RealTimePredatorPreyGame, ListGameState) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
 
RecordItemLocationMeasure - Class in net.sourceforge.cilib.games.measurement
Record each location an Agent has occupied at each timestep in the game.
RecordItemLocationMeasure() - Constructor for class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
 
RecordItemLocationMeasure(Enum) - Constructor for class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
 
RecordItemLocationMeasure(RecordItemLocationMeasure) - Constructor for class net.sourceforge.cilib.games.measurement.RecordItemLocationMeasure
 
recordRoundStartState() - Method in class net.sourceforge.cilib.games.game.predatorprey.RealTimePredatorPreyGame
Record the state of the game at the start of the round
recordRoundStartState() - Method in interface net.sourceforge.cilib.games.game.RealTimeGame
Record the state of the game at the start of the round
recordRoundStartState() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
reevaluate() - Method in class net.sourceforge.cilib.pso.dynamic.DynamicParticle
Re-evaluate both best and current position of the particle.
reevaluate(List<? extends Entity>, int) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Reevaluate a specified percentage of the given entities.
reevaluation - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
reevaluationRatio - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
 
ReevaluationReactionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
This reaction strategy reevaluates the specified ratio of randomly chosen entities in the given Topology.
ReevaluationReactionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
 
ReevaluationReactionStrategy(ReevaluationReactionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
 
ReflectedFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
Class to reflect the wrapped Function in a horizontal or vertical fashion.
ReflectedFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
 
refold(RNAConformation, RNAConformation, RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.GreedyRNAFolder
This method modifies the 'currentFolding' HashSet.
refold(RNAConformation, RNAConformation, RNAConformation) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAFolder
 
ReInit(InputStream) - Method in class net.sourceforge.cilib.type.parser.DomainParser
Reinitialise.
ReInit(InputStream, String) - Method in class net.sourceforge.cilib.type.parser.DomainParser
Reinitialise.
ReInit(Reader) - Method in class net.sourceforge.cilib.type.parser.DomainParser
Reinitialise.
ReInit(DomainParserTokenManager) - Method in class net.sourceforge.cilib.type.parser.DomainParser
Reinitialise.
ReInit(SimpleCharStream) - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Reinitialise parser.
ReInit(Reader, int, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(Reader, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(Reader) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream, String) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
Reinitialise.
ReinitialisationBoundary - Class in net.sourceforge.cilib.problem.boundaryconstraint
Once the entity has over shot the search space boundaries, re-initialise the Entity once again to be witihin the search space of the problem at a random position.
ReinitialisationBoundary() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.ReinitialisationBoundary
 
reinitialise() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Re-initialise the given Entity within the defined domain.
reinitialise() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Re-initialise the given Entity within the defined domain.
reinitialise() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
reinitialise() - Method in class net.sourceforge.cilib.ec.Individual
Re-initialise the given Entity within the defined domain.
reinitialise() - Method in interface net.sourceforge.cilib.entity.Entity
Re-initialise the given Entity within the defined domain.
reinitialise() - Method in class net.sourceforge.cilib.entity.Harmony
Re-initialise the given Entity within the defined domain.
reinitialise() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
reinitialise() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Re-initialise the given Entity within the defined domain.
reinitialization - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
 
reinitializationRatio - Variable in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
 
ReinitializationReactionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.responsestrategies
This reaction strategy reinitializes the specified ratio of randomly chosen entities in the given Topology.
ReinitializationReactionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
 
ReinitializationReactionStrategy(ReinitializationReactionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
 
reinitialize(List<? extends Entity>, int) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Reinitialize a specified number of the given entities.
remove(Object) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
remove(Object) - Method in class net.sourceforge.cilib.container.SortedList
remove(int) - Method in class net.sourceforge.cilib.container.SortedList
remove() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Removes from the list the last element that was returned by next or previous.
remove() - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Removes from the list the last element that was returned by next or previous.
remove(E) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
remove(Object) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
remove(int) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
remove(E) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Removes an entity from the topology.
remove(Object) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
remove(int) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
remove(E) - Method in interface net.sourceforge.cilib.entity.Topology
Removes an entity from the topology.
remove(Object) - Method in interface net.sourceforge.cilib.entity.Topology
remove(Object) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
remove(int) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
remove(Object) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
remove(int) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
remove(Object) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
remove(int) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
remove() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree.TreeIterator
remove(E) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Remove the object at the specified index.
remove(E) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Remove the object at the specified index.
remove(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Remove the object at the specified index.
remove(E) - Method in class net.sourceforge.cilib.type.types.container.Set
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.Set
Remove the object at the specified index.
remove(E) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Remove the object at the specified index.
remove(E) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Remove the first element found within the Structure.
remove(int) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Remove the object at the specified index.
remove(Type) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Remove the first element found within the Structure.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Remove the object at the specified index.
remove(Numeric) - Method in class net.sourceforge.cilib.type.types.container.Vector
Remove the first occurance of the provided object.
remove(int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Remove the element at index from the Vector.
removeAlgorithmListener(AlgorithmListener) - Method in class net.sourceforge.cilib.algorithm.Algorithm
Removes an algorithm event listener.
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.container.SortedList
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
removeAll(Collection<?>) - Method in interface net.sourceforge.cilib.entity.Topology
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
removeAll(Collection<?>) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
removeAll(StructuredType<E>) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Remove all instances contained within structure, if contained.
removeAll(StructuredType<E>) - Method in class net.sourceforge.cilib.type.types.container.Set
Remove all instances contained within structure, if contained.
removeAll(StructuredType<E>) - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Remove all instances contained within structure, if contained.
removeAll(StructuredType<E>) - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Remove all instances contained within structure, if contained.
removeAll(StructuredType<Type>) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Remove all instances contained within structure, if contained.
removeAll(StructuredType<Numeric>) - Method in class net.sourceforge.cilib.type.types.container.Vector
Remove all the objects contained within structure.
removeCompetitor(int, int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
removeCompetitor(int) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Remove the Competitor at the specified index in the list
removeObserver(Observer) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
removePopulationBasedalgorithm(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Remove the provided PopulationBasedAlgorithm from the collection of maintained instances.
removeProgressListener(ProgressListener) - Method in class net.sourceforge.cilib.simulator.Simulation
Removes a listener for progress events.
removeRestartCondition(StoppingCondition) - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Removes a restart condition.
removeScores(int) - Method in class net.sourceforge.cilib.coevolution.score.EntityScoreboard
Remove all the scores from a specified round
removeStoppingCondition(StoppingCondition) - Method in class net.sourceforge.cilib.algorithm.Algorithm
Removes a stopping condition.
removeSubList(int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Remove the PopulationCompetitorList with the specified index
removeSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Remove the subtree with the given key value.
removeSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
Remove the subtree at the specified index within the current Tree.
removeSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Remove the subtree with the given key value.
removeSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
Remove the subtree at the specified index within the current Tree.
removeSubTree(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Remove the subtree with the given key value.
removeSubTree(int) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Remove the subtree at the specified index within the current Tree.
removeSubTree(E) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Remove the subtree with the given key value.
removeSubTree(int) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Remove the subtree at the specified index within the current Tree.
repeat() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
replaceWorst(Competitor) - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
Search through the Competitor for the lowest fitness and replace it with newCompetitor if its fitness is better
reset() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Reset the Algorithm internals if needed.
reset() - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Reset the Algorithm internals if needed.
reset() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
reset() - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
reset() - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
reset() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
reset() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
reset() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
reset() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
reset() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
 
reset() - Method in class net.sourceforge.cilib.pso.PSO
Reset the Algorithm internals if needed.
reset() - Method in class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
reset() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
reset() - Method in class net.sourceforge.cilib.type.types.Bit
Set the Bit object to an initial value of false.
reset() - Method in class net.sourceforge.cilib.type.types.Blackboard
reset() - Method in class net.sourceforge.cilib.type.types.container.Set
Not supported for this container.
reset() - Method in class net.sourceforge.cilib.type.types.container.Vector
Reset the instance to a predefined state.
reset() - Method in class net.sourceforge.cilib.type.types.Int
Reset the instance to a predefined state.
reset() - Method in class net.sourceforge.cilib.type.types.Long
Reset the instance to a predefined state.
reset() - Method in class net.sourceforge.cilib.type.types.Real
Set the value of the Real to a default value of 0.0.
reset() - Method in interface net.sourceforge.cilib.type.types.Resetable
Reset the instance to a predefined state.
reset(Type) - Static method in class net.sourceforge.cilib.type.types.Types
Reset the current Resetable instance.
Resetable - Interface in net.sourceforge.cilib.type.types
 
resetError(NNError[]) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
resetFitness() - Method in class net.sourceforge.cilib.ec.Individual
Resets the fitness to InferiorFitness.
resetIterationCount() - Method in class net.sourceforge.cilib.games.states.GameState
 
respond(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
Respond to the environment change and ensure that the neighbourhood best entities are updated.
respond(E) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ParticleReevaluationResponseStrategy
Deprecated. Respond to environment change by re-evaluating each particle's position, personal best and neighbourhood best.
Restarts - Class in net.sourceforge.cilib.measurement.generic
 
Restarts() - Constructor for class net.sourceforge.cilib.measurement.generic.Restarts
Creates a new instance of Restarts.
Restarts(Restarts) - Constructor for class net.sourceforge.cilib.measurement.generic.Restarts
Copy constructor.
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.container.SortedList
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
retainAll(Collection<?>) - Method in interface net.sourceforge.cilib.entity.Topology
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
retainAll(Collection<?>) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
ReverseOrdering<E> - Class in net.sourceforge.cilib.util.selection.ordering
Reverse the ordering of the provided list of entries.
ReverseOrdering() - Constructor for class net.sourceforge.cilib.util.selection.ordering.ReverseOrdering
 
RingBasedOrdering<E> - Class in net.sourceforge.cilib.util.selection.ordering
Arrange all elements as a ring and depending on the desired pivot point, return an ordering that defines the list of elements that follow on from the pivot.
RingBasedOrdering() - Constructor for class net.sourceforge.cilib.util.selection.ordering.RingBasedOrdering
Create a new instance.
RingBasedOrdering(E) - Constructor for class net.sourceforge.cilib.util.selection.ordering.RingBasedOrdering
Create a new instance with the provided marker as the pivot point.
RingBasedPopulationSelection - Class in net.sourceforge.cilib.util.selection.recipes
 
RingBasedPopulationSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.RingBasedPopulationSelection
 
Ripple - Class in net.sourceforge.cilib.functions.continuous
Ripple function.
Ripple() - Constructor for class net.sourceforge.cilib.functions.continuous.Ripple
Create an instance of the function.
RLShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the reverse L shape
RLShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.RLShape
 
RLShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.RLShape
 
RNAAccuracyMeasurement - Class in net.sourceforge.cilib.bioinf.rnaprediction
TODO: Complete this javadoc.
RNAAccuracyMeasurement(RNAAccuracyMeasurement) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAAccuracyMeasurement
 
RNAConformation - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAConformation() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAConformation
Create an instance of a RNAConformation.
RNAFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
 
RNAFitness(String) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
 
RNAFolder - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAFolder() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAFolder
 
RNAInitialiser - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAInitialiser() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAInitialiser
 
RNAOptimisationProblem - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAOptimisationProblem() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
 
RNAOptimisationProblem(RNAOptimisationProblem) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Copy constructor.
RNAParticle - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAParticle() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Create a new RNAParticle instance.
RNAParticle(RNAParticle) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Copy constructor.
RNAPSO - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAPSO() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAPSO
Create an instance of the RNAPSO.
RNAStem - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAStem() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
RNAStem(ArrayList<NucleotidePair>) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
RNAStructureMeasurement - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAStructureMeasurement() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement
 
RNAStructureMeasurement(RNAStructureMeasurement) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAStructureMeasurement
 
RNAVelocityUpdate - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
RNAVelocityUpdate() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
RNAVelocityUpdate(RNAVelocityUpdate) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
RobelOverfittingRho - Class in net.sourceforge.cilib.neuralnetwork.foundation.measurements
TODO: Complete this javadoc.
RobelOverfittingRho() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.RobelOverfittingRho
 
RobelOverfittingRho(RobelOverfittingRho) - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.measurements.RobelOverfittingRho
 
rootElement() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
rootNode() - Method in class net.sourceforge.cilib.type.parser.JJTDomainParserState
 
Rosenbrock - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Generalised Rosenbrock function.
Rosenbrock() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Rosenbrock
Create an instance of Rosenbrock.
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Rotate the shape to its next possible orientation
rotate(int) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Rotate this shape for the specified amount of times
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.BoxShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.LineShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.LShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.RLShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.RZigZagShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.TShape
Rotate the shape to its next possible orientation
rotate() - Method in class net.sourceforge.cilib.games.game.tetris.shape.ZigZagShape
Rotate the shape to its next possible orientation
RotatedFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
 
RotatedFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
RouletteWheelSelection<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.recipes
A recipe for Roulette wheel selection.
RouletteWheelSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Create a new instance.
RouletteWheelSelection(Weighing<E>) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Create a new instance with the provided weighing strategy.
RouletteWheelSelection(Weighing<E>, Random) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
 
RouletteWheelSelection(RouletteWheelSelection) - Constructor for class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Create a copy of the provided instance.
RouletteWheelSelectionStrategy - Class in net.sourceforge.cilib.entity.operators.selection
This class implements Roulette Wheel selection, also known as proportionate selection.
RouletteWheelSelectionStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.selection.RouletteWheelSelectionStrategy
Create an instance of the RouletteWheelSelectionStrategy.
RouletteWheelSelectionStrategy(RouletteWheelSelectionStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.selection.RouletteWheelSelectionStrategy
Create a copy of the provided instance.
run() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Executes the algorithm.
run() - Static method in class net.sourceforge.cilib.neuralnetwork.testarea.XMLmimic
 
run() - Method in class net.sourceforge.cilib.simulator.Simulation
Executes all the experiments for this simulation.
runSimulation() - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
RZigZagShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the Reverse ZigZag shape
RZigZagShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.RZigZagShape
 
RZigZagShape(RZigZagShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.RZigZagShape
 

S

SAILAEvaluationMediator - Class in net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators
 
SAILAEvaluationMediator() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators.SAILAEvaluationMediator
 
SAILARealData - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
SAILARealData() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
Salomon - Class in net.sourceforge.cilib.functions.continuous
Salomon function.
Salomon() - Constructor for class net.sourceforge.cilib.functions.continuous.Salomon
Create an instance of the function.
ScaledFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
Characteristics: Let c be a fixed positive number.
ScaledFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Create an instance of the decorator.
ScatterSeperationRatio - Class in net.sourceforge.cilib.functions.clustering.validityindices
The ScatterSeperationRatio class was created due to the fact that some validity indices make use of the cluster scatter and cluster seperation concepts.
ScatterSeperationRatio() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
Schaffer2 - Class in net.sourceforge.cilib.functions.continuous
 
Schaffer2() - Constructor for class net.sourceforge.cilib.functions.continuous.Schaffer2
Creates a new instance of Schaffer.
Schaffer6 - Class in net.sourceforge.cilib.functions.continuous
The Schaffer F6 function.
Schaffer6() - Constructor for class net.sourceforge.cilib.functions.continuous.Schaffer6
Constructor.
Schwefel - Class in net.sourceforge.cilib.functions.continuous
Schwefel function.
Schwefel() - Constructor for class net.sourceforge.cilib.functions.continuous.Schwefel
Create a new instance of Schwefel.
SchwefelProblem1_2 - Class in net.sourceforge.cilib.functions.continuous
SchwefelProblem1_2.
SchwefelProblem1_2() - Constructor for class net.sourceforge.cilib.functions.continuous.SchwefelProblem1_2
 
SchwefelProblem2_21 - Class in net.sourceforge.cilib.functions.continuous
SchwefelProblem2_21.
SchwefelProblem2_21() - Constructor for class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_21
 
SchwefelProblem2_22 - Class in net.sourceforge.cilib.functions.continuous
SchwefelProblem2_22.
SchwefelProblem2_22() - Constructor for class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_22
Creates an new instance.
SchwefelProblem2_26 - Class in net.sourceforge.cilib.functions.continuous
SchwefelProblem 2_26.
SchwefelProblem2_26() - Constructor for class net.sourceforge.cilib.functions.continuous.SchwefelProblem2_26
 
ScoreGameResult - Class in net.sourceforge.cilib.games.result
 
ScoreGameResult(double) - Constructor for class net.sourceforge.cilib.games.result.ScoreGameResult
 
ScoreGameResult(ScoreGameResult) - Constructor for class net.sourceforge.cilib.games.result.ScoreGameResult
 
ScoringMethod - Interface in net.sourceforge.cilib.bioinf.sequencealignment
Public common interface to allow multiple scoring schemes, namely Similarity, MatchFogel, and BestMatch (DNA or any characters), BLOSUM and PAM (Proteins).
searchAllowed() - Method in class net.sourceforge.cilib.boa.bee.ExplorerBee
Verifies it is allowed for a worker bee to convert to an explorer bee.
Seeder - Class in net.sourceforge.cilib.math.random.generator
 
seedGenerator() - Method in class net.sourceforge.cilib.games.random.FixedSeedStrategy
Get a seed value and seed the generator.
seedGenerator() - Method in class net.sourceforge.cilib.games.random.GameSeedingStrategy
Get a seed value and seed the generator.
seedGenerator() - Method in class net.sourceforge.cilib.games.random.ListSeedingStrategy
Get a seed value and seed the generator.
seedGenerator() - Method in class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
Get a seed value and seed the generator.
seedGenerator() - Method in class net.sourceforge.cilib.games.random.UniqueSeedingStrategy
Get a seed value and seed the generator.
seeds - Variable in class net.sourceforge.cilib.games.random.ListSeedingStrategy
 
SeedSelectionStrategy - Interface in net.sourceforge.cilib.math.random.generator
The defined manner within which a seed value is generated and provided to a pseudo-random number generator.
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.CompoundSelection
 
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
Perform an elitist selection.
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.RandomSelectionStrategy
 
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.RouletteWheelSelectionStrategy
Apply the selection strategy and return a single Entity.
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.SelectionStrategy
Apply the selection strategy and return a single Entity.
select(Topology<T>) - Method in class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Apply the selection strategy and return a single Entity.
select(List<? extends E>) - Method in class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Perform the selection process.
select(List<? extends E>) - Method in class net.sourceforge.cilib.util.selection.recipes.RandomSelection
Perform the selection process.
select(List<? extends E>) - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Perform the selection process.
select(List<? extends PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.util.selection.recipes.RingBasedPopulationSelection
Perform the selection process.
select(List<? extends E>) - Method in class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Perform the selection process.
select(List<? extends E>) - Method in interface net.sourceforge.cilib.util.selection.recipes.SelectionRecipe
Perform the selection process.
select(List<? extends E>) - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Perform the selection process.
select() - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the result of the selection.
select() - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
SelectAllOpponentSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
example of implementation of an OpponentSelectionStrategy, selects all the opponents in the pool
SelectAllOpponentSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectAllOpponentSelectionStrategy
 
SelectAllOpponentSelectionStrategy(SelectAllOpponentSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectAllOpponentSelectionStrategy
 
SelectAllSolutionsPoolSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
Adds all the Entitys current positions to the pool of potentail opponents
SelectAllSolutionsPoolSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectAllSolutionsPoolSelectionStrategy
 
SelectAllSolutionsPoolSelectionStrategy(SelectAllSolutionsPoolSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectAllSolutionsPoolSelectionStrategy
 
selectCompetitors(CoevolutionCompetitorList) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
Select opponents from the pool
selectCompetitors(CoevolutionCompetitorList) - Method in class net.sourceforge.cilib.coevolution.selection.SelectAllOpponentSelectionStrategy
Select opponents from the pool
selectCompetitors(CoevolutionCompetitorList) - Method in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
Select opponents from the pool
selectFromOwnPopulation - Variable in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
selectGuide(Particle) - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.DNGuideSelectionStrategy
 
selectGuide(Particle) - Method in interface net.sourceforge.cilib.pso.moo.guideselectionstrategies.GuideSelectionStrategy
Selects a guide for particle.
selectGuide(Particle) - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.NBestGuideSelectionStrategy
 
selectGuide(Particle) - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.PBestGuideSelectionStrategy
 
selectGuide(Particle) - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
selectGuides(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
SelectHOFPoolSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
Maintains a HOF and adds the HOF Competitors to the pool
SelectHOFPoolSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
 
SelectHOFPoolSelectionStrategy(SelectHOFPoolSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
 
Selection<E> - Class in net.sourceforge.cilib.util.selection
A Selection is an abstraction that allows operations to be applied to a collection instace that result in a selection of list elements, based on a varied of potential combination of operators.
Selection.Entry<E> - Class in net.sourceforge.cilib.util.selection
This class provides the notion of an entry within a list for the selection process.
SelectionRecipe<E> - Interface in net.sourceforge.cilib.util.selection.recipes
A recipe is a series of steps that need to be followed to achieve a selection.
SelectionStrategy - Class in net.sourceforge.cilib.entity.operators.selection
 
SelectionStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.selection.SelectionStrategy
 
SelectionSyntax<E> - Interface in net.sourceforge.cilib.util.selection
 
SelectiveContributionUpdateStrategy - Class in net.sourceforge.cilib.cooperative.contributionupdatestrategies
TODO: Complete this javadoc.
SelectiveContributionUpdateStrategy() - Constructor for class net.sourceforge.cilib.cooperative.contributionupdatestrategies.SelectiveContributionUpdateStrategy
 
SelectiveKnowledgeTransferStrategy - Class in net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies
An implementation of KnowledgeTransferStrategy where two Selection instances are used to first select a sub-population (PopulationBasedAlgorithm) from a collection of population-based algorithms (see MultiPopulationBasedAlgorithm) and then within this sub-population's {@link Topology}, which entity's knowledge is to be transfered to the caller requesting it.
SelectiveKnowledgeTransferStrategy() - Constructor for class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
SelectiveKnowledgeTransferStrategy(SelectiveKnowledgeTransferStrategy) - Constructor for class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
SelectNOpponentSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
Select N random opponents from the pool of competitors
SelectNOpponentSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
SelectNOpponentSelectionStrategy(SelectNOpponentSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
selectOpponents(int, CoevolutionAlgorithm) - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
Select opponents based on the current OpponentSelectionStrategy
SelectpBestSolutionsPoolSelectionStrategy - Class in net.sourceforge.cilib.coevolution.selection
Add all the populations personal best vectors to the opponent pool, this can only be used on Algorithms that optimise Particles
SelectpBestSolutionsPoolSelectionStrategy() - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectpBestSolutionsPoolSelectionStrategy
 
SelectpBestSolutionsPoolSelectionStrategy(SelectpBestSolutionsPoolSelectionStrategy) - Constructor for class net.sourceforge.cilib.coevolution.selection.SelectpBestSolutionsPoolSelectionStrategy
 
selectState(Game<GameState>, int) - Method in class net.sourceforge.cilib.games.agent.state.traversal.MinMaxAlphaBetaTraversalStrategy
Select a GameState from the given game objects list of possible states for the specified player.
selectState(Game<GameState>, int) - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
Select a GameState from the given game objects list of possible states for the specified player.
sentries - Variable in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryPointsDetectionStrategy
 
SequentialAlgorithmIterator<E extends Algorithm> - Class in net.sourceforge.cilib.cooperative.algorithmiterators
Iterate through a list of Algorithms in a sequential order.
SequentialAlgorithmIterator() - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Construct a new SequentialAlgorithmIterator.
SequentialAlgorithmIterator(List<E>) - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Construct a new SequentialAlgorithmIterator for the supplied list.
SequentialAlgorithmIterator(SequentialAlgorithmIterator) - Constructor for class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Construct a new SequentialAlgorithmIterator from the supplied one.
SequentialObjectiveAssignmentStrategy - Class in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies
Sequentially assigns the sub-objectives of a MOOptimisationProblem to different PopulationBasedAlgorithm instances.
SequentialObjectiveAssignmentStrategy() - Constructor for class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.SequentialObjectiveAssignmentStrategy
 
SequentialObjectiveAssignmentStrategy(SequentialObjectiveAssignmentStrategy) - Constructor for class net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies.SequentialObjectiveAssignmentStrategy
 
set(E, int) - Method in interface net.sourceforge.cilib.container.Array
Set the element at index.
set(int) - Method in class net.sourceforge.cilib.container.BitArray
Sets the specified bit at index index to the true / on state.
set(int, int, E) - Method in class net.sourceforge.cilib.container.Matrix
Deprecated. Place an Object at a point (row, column) within the Matrix.
set(T, int) - Method in class net.sourceforge.cilib.container.MultiDimensionalArray
 
set(int, E) - Method in class net.sourceforge.cilib.container.SortedList
Replace the current element located at index with element.
set(T, int) - Method in class net.sourceforge.cilib.container.StandardArray
Set the element at index.
set(E) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Replaces the last element returned by next or previous with the specified element.
set(E) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Replaces the last element returned by next or previous with the specified element.
set(int, E) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
set(int, E) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
set(int, E) - Method in interface net.sourceforge.cilib.entity.Topology
set(Archive) - Static method in class net.sourceforge.cilib.moo.archive.Archive
Set the archive to be used by a multi-objective optimisation algorithm.
set(int, OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
set(int, OptimisationSolution) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
set(int, OptimisationProblem) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
set(String) - Method in class net.sourceforge.cilib.type.types.Bit
Set the value of the Numeric.
set(boolean) - Method in class net.sourceforge.cilib.type.types.Bit
Set the value of the Numeric.
set(double) - Method in class net.sourceforge.cilib.type.types.Bit
Set the value of the Numeric.
set(int) - Method in class net.sourceforge.cilib.type.types.Bit
Set the value of the Numeric.
set(int, E) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Set the Type at the index index.
Set<E> - Class in net.sourceforge.cilib.type.types.container
TODO: Fix the copy constructor.
Set() - Constructor for class net.sourceforge.cilib.type.types.container.Set
Create a new Set.
Set(Set<E>) - Constructor for class net.sourceforge.cilib.type.types.container.Set
Copy constructor.
set(int, Type) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Set the Type at the index index.
set(int, Numeric) - Method in class net.sourceforge.cilib.type.types.container.Vector
Set the Numeric type at the specified index.
set(String) - Method in class net.sourceforge.cilib.type.types.Int
Set the value of the Numeric.
set(boolean) - Method in class net.sourceforge.cilib.type.types.Int
Set the value of the Numeric.
set(double) - Method in class net.sourceforge.cilib.type.types.Int
Set the value of the Numeric.
set(int) - Method in class net.sourceforge.cilib.type.types.Int
Set the value of the Numeric.
set(String) - Method in class net.sourceforge.cilib.type.types.Long
Set the value of the Numeric.
set(boolean) - Method in class net.sourceforge.cilib.type.types.Long
Set the value of the Numeric.
set(double) - Method in class net.sourceforge.cilib.type.types.Long
Set the value of the Numeric.
set(int) - Method in class net.sourceforge.cilib.type.types.Long
Set the value of the Numeric.
set(String) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the value of the Numeric.
set(boolean) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the value of the Numeric.
set(int) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the value of the Numeric.
set(double) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the value of the Numeric.
set(String) - Method in class net.sourceforge.cilib.type.types.Real
Set the value of the Numeric.
set(boolean) - Method in class net.sourceforge.cilib.type.types.Real
Set the value of the Numeric.
set(double) - Method in class net.sourceforge.cilib.type.types.Real
Set the value of the Numeric.
set(int) - Method in class net.sourceforge.cilib.type.types.Real
Set the value of the Numeric.
setActivationFunction(NeuronFunction) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
Set the type of NeuronFunction to use for the hidden layer(s) of the Neural Network
setActiveOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.moo.criterion.CriterionBasedMOProblemAdapter
 
setAddLayer(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
 
setAddRandomProbability(double) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
setAddToHOFEpoch(int) - Method in class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
 
setAgent(Agent) - Method in class net.sourceforge.cilib.games.game.Game
Add a new agent
setAgent(Agent, int) - Method in class net.sourceforge.cilib.games.game.Game
Add an agent with a specified playerID, if it already exists, replace it
setAgent(Agent) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Add a new agent
setAgent(Agent, int) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
Add an agent with a specified playerID, if it already exists, replace it
setAgentScore(Fitness) - Method in class net.sourceforge.cilib.games.agent.Agent
 
setAgentToken(Enum<?>) - Method in class net.sourceforge.cilib.games.agent.Agent
 
setAgentToken(String) - Method in class net.sourceforge.cilib.games.agent.Agent
Creates an enum based on the string, enum has to be inside the GameToken enum class, and cannot be another nested enum.
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
setAlgorithm(PopulationBasedAlgorithm) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
Add a subpopulation Algorithm
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Sets the algorithm that this stopping condition should be applied to.
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
Not used.
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
Sets the algorithm that this stopping condition should be applied to.
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
setAlgorithm(Algorithm) - Method in interface net.sourceforge.cilib.stoppingcondition.StoppingCondition
Sets the algorithm that this stopping condition should be applied to.
setAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.xml.XMLAlgorithmFactory
 
setAlgorithmIterator(AlgorithmIterator<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Set the type of iterator to be used.
setAlgorithms(List<E>) - Method in interface net.sourceforge.cilib.cooperative.algorithmiterators.AlgorithmIterator
 
setAlgorithms(List<E>) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.RandomAlgorithmIterator
Sets the list that will be iterated through.
setAlgorithms(List<E>) - Method in class net.sourceforge.cilib.cooperative.algorithmiterators.SequentialAlgorithmIterator
Sets the list that will be iterated through.
setAlignment(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
setAlignment(ArrayList<String>) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
setAlignmentCreator(BinaryAlignmentCreator) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Set the AlignmentCreator.
setAlignmentCreator(AlignmentCreator) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
setAlpha(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.crossover.BlendCrossoverStrategy
 
setAlpha(double) - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Set the value of alpha.
setAlpha(int) - Method in class net.sourceforge.cilib.util.ChebyshevDistanceMeasure
Set the 'alpha' value that will be used in the calculation of the Minkowski Metric.
setAlpha(int) - Method in class net.sourceforge.cilib.util.MinkowskiMetric
Set the 'alpha' value that will be used in the calculation of the Minkowski Metric.
setAltitudeDiff(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setAmountHistoricGames(int) - Method in class net.sourceforge.cilib.coevolution.score.fitnesscalculation.FitnessCalculationStrategy
 
setArchive(Archive) - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
SetBasedConstrainedArchive - Class in net.sourceforge.cilib.moo.archive.constrained
A constrained set-driven Archive implementation.
SetBasedConstrainedArchive() - Constructor for class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
setBeginIndex(int) - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Sets the index where the elements of the pattern begins.
setBehavioralDomain(String) - Method in class net.sourceforge.cilib.functions.Function
Set the behavioural domain of the Function.
setBehaviouralDomainRegistry(StringBasedDomainRegistry) - Method in class net.sourceforge.cilib.functions.Function
 
setBehaviouralParameters(Type) - Method in class net.sourceforge.cilib.ec.Individual
Set the behavioural parameters for the Entity.
setBehaviouralParameters(Type) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setBehaviouralParameters(Type) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
setBestPosition(Type) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Set the best position for the current RNAParticle.
setBestPosition(Type) - Method in class net.sourceforge.cilib.pso.particle.MultiObjectiveParticle
 
setBit(int, int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemConflictTable
Sets a bit (1) in the matrix.
setBit(boolean) - Method in class net.sourceforge.cilib.type.types.Bit
Set the state of of this Bit object.
setBit(String) - Method in class net.sourceforge.cilib.type.types.Bit
Set the bit value with the provided value.
setBit(int, boolean) - Method in class net.sourceforge.cilib.type.types.container.Vector
Set the value at index to the specified value.
setBit(boolean) - Method in class net.sourceforge.cilib.type.types.Int
Set the bit value with the provided value.
setBit(String) - Method in class net.sourceforge.cilib.type.types.Int
Set the bit value with the provided value.
setBit(boolean) - Method in class net.sourceforge.cilib.type.types.Long
Set the bit value with the provided value.
setBit(String) - Method in class net.sourceforge.cilib.type.types.Long
Set the bit value with the provided value.
setBit(boolean) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the bit value with the provided value.
setBit(String) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the bit value with the provided value.
setBit(boolean) - Method in class net.sourceforge.cilib.type.types.Real
Set the bit value with the provided value.
setBit(String) - Method in class net.sourceforge.cilib.type.types.Real
Set the bit value with the provided value.
setBitsPerDimension(int) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
setBoardHeight(int) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
setBoardSize(int) - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
setBoardSize(int) - Method in class net.sourceforge.cilib.functions.discrete.Queens
 
setBoardWidth(int) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
setBoundaryConstraint(BoundaryConstraint) - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Set the BoundaryConstraint to maintain within this IterationStrategy.
setBounds(Bounds) - Method in class net.sourceforge.cilib.type.types.Bit
Set the bounds for the current Bit instance.
setBounds(double, double) - Method in class net.sourceforge.cilib.type.types.Bit
Set the bounds for the current Bit instance.
setBounds(Bounds) - Method in interface net.sourceforge.cilib.type.types.BoundedType
 
setBounds(double, double) - Method in interface net.sourceforge.cilib.type.types.BoundedType
 
setBounds(Bounds) - Method in class net.sourceforge.cilib.type.types.Numeric
 
setBounds(double, double) - Method in class net.sourceforge.cilib.type.types.Numeric
 
setBuiltRepresenation(StructuredType) - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Set the representation for this domain string.
setCandidateSolution(Type) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
setCandidateSolution(StructuredType) - Method in class net.sourceforge.cilib.ec.Individual
Set the Type maintained by this Entitys CandidateSolution.
setCandidateSolution(StructuredType) - Method in class net.sourceforge.cilib.entity.AbstractEntity
Set the Type maintained by this Entitys CandidateSolution.
setCandidateSolution(StructuredType) - Method in interface net.sourceforge.cilib.entity.CandidateSolution
Set the solution that the CandidateSolution represents.
setCandidateSolution(StructuredType) - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Set the solution that the CandidateSolution represents.
setCandidateSolution(StructuredType) - Method in interface net.sourceforge.cilib.entity.Entity
Set the candidate solution of the current Entity to the provided Type.
setCandidateSolution(StructuredType) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setCapacity(int) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
setCapacity(int) - Method in class net.sourceforge.cilib.moo.archive.constrained.ConstrainedArchive
 
setCentroidsInitialisationStrategy(CentroidsInitialisationStrategy) - Method in class net.sourceforge.cilib.clustering.kmeans.KMeans
Set the current CentroidsInitialisationStrategy.
setChangeFrequency(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
Set the change frequency.
setChangeStrategy(ChangeStrategy) - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Set the ChangeStrategy for this problem.
setCharge(double) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
setChargedParticleInitialisationStrategy(ChargedParticleInitialisationStrategy) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedParticle
 
setChargedRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
setChargeMagnitude(double) - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
setClassIndex(int) - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Sets the index of the column that represents the class of the pattern.
setCloseProbability(double) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
setClusterableDataSet(ClusterableDataSet) - Method in class net.sourceforge.cilib.util.ClusteringUtils
This class only deals with ClusterableDataSets.
setClusterCenterStrategy(ClusterCenterStrategy) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
setClusteringProblem(ClusteringProblem) - Method in class net.sourceforge.cilib.util.ClusteringUtils
This class only deals with ClusteringProblems.
setCoevolutionIterationStrategy(CoevolutionIterationStrategy) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
setCognitive(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the cognitive component.
setCognitiveAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
setCognitiveAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Set the coginitive acceleration parameter.
setCognitiveAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Set the cognitive component ControlParameter.
setColumnTransisitons(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setComparator(Comparator<E>) - Method in class net.sourceforge.cilib.container.SortedList
Set the Comparator to use.
setComparator(Comparator<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.recipes.ElitistSelection
Set the comparator to be used.
setComparator(Comparator<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Set the comparator to use.
setComparator(Comparator<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Set the comparator for the selection.
setCompetitors(int, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
Creates the opponent pool with an arbitrary number of OpponentPoolSelectionStrategys and select opponents from it.
setConflictingStems(ArrayList<RNAStem>) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
setCongnitiveRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
 
setConnectedHoles(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setConsecutiveIterations(ControlParameter) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
Any ControlParameter can be used to control the MinimumDiversity.consecutiveIterations value.
setContext(CooperativeEntity) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
setContributionUpdateStrategy(ContributionUpdateStrategy) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
setControlParameter(ControlParameter) - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Set the ControlParameterUpdateStrategy to be used.
setCrossoverProbability(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
setCrossoverProbability(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the crossover probability.
setCrossoverStrategy(CrossoverStrategy) - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Set the CrossoverStrategy used to create offspring entities.
setCrossoverStrategy(CrossoverStrategy) - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Set the current CrossoverStrategy and reinitialise the operator pipeline.
setCurrentAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
setCurrentGameState(E) - Method in class net.sourceforge.cilib.games.game.Game
Set the current state of the game
setCurrentOutput(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setCurrentPlayer(int) - Method in class net.sourceforge.cilib.games.game.Game
 
setCurrentShape(AbstractShape) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
setCyclic(boolean) - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
 
setDancingSelectionStrategy(SelectionStrategy) - Method in class net.sourceforge.cilib.boa.ABC
 
setData(byte[]) - Method in class net.sourceforge.cilib.measurement.MeasurementMemento
 
setData(NeuralNetworkData) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setData(NeuralNetworkData) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
setDataDimension(int) - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
Set the dimension of the data.
setDataRandomSeed(long) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
Set the DataSetBuilder for this optimistion problem.
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Use the DataSetManager singleton to parse and/or retrieve the given DataSetBuilder.
setDataSetBuilder(StringDataSetBuilder) - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
This method is used during initialisation by the Simulator to provide us with out DataSet.
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
setDataSetBuilder(DataSetBuilder) - Method in interface net.sourceforge.cilib.problem.OptimisationProblem
Set the DataSetBuilder for this optimistion problem.
setDataSetBuilder(DataSetBuilder) - Method in class net.sourceforge.cilib.problem.OptimisationProblemAdapter
Set the DataSetBuilder for this optimistion problem.
setDebugStream(PrintStream) - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Set debug output.
setDefaultDeltaT(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm parameter variable deltaT.
setDelimiter(String) - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Sets the regular expression (as a String} that should be used as delimiter to split a string into the elements of the pattern.
setDelta(ErrorSignal) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
setDelta(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable delta.
setDelta1(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm parameter variable delta1.
setDeltaT(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm parameter variable deltaT.
setDeratingFunction(Function) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This is an accessor method that can be used to set the deratingFunction that is used to modify the search space.
setDesiredFitness(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
setDetectionStrategy(EnvironmentChangeDetectionStrategy<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Set the EnvironmentChangeDetectionStrategy to be used.
setDeviationStrategy(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
setDiameter(double) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumSwarmDiameter
 
setDimension(int) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
setDimension(int) - Method in class net.sourceforge.cilib.ec.Individual
Set the current dimension value for the current Individual.
setDimension(int) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setDimension(int) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
setDimensions(int) - Method in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
setDistanceBandwidth(ControlParameter) - Method in class net.sourceforge.cilib.hs.HS
Set the distance bandwidth.
setDistanceMeasure(DistanceMeasure) - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
setDistanceMeasure(DistanceMeasure) - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
setDistanceMeasure(DistanceMeasure) - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
setDistanceMeasure(DistanceMeasure) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Set the DistanceMeasure that will be used for all distance calculations throughout a clustering.
setDistanceMetric(DistanceMetric) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
Called by XML factory to set the DistranceMetric to use.
setDistributor(DataDistributionStrategy) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Set the required DataDistributionStrategy.
setDiversity(Diversity) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
The manner in which the diversity should be calculated can be constructed using the Diversity hierarchy and its strategies.
setDomain(String) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
setDomain(String) - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Set the domain of the function and generate a random bit string.
setDomain(String) - Method in class net.sourceforge.cilib.functions.discrete.KnightCoverageProblem
Deprecated. Sets the domain of the function.
setDomain(String) - Method in class net.sourceforge.cilib.functions.Function
Sets the domain of the function.
setDomain(String) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Sets the domain of the dataset being clustered.
setDomainRegistry(DomainRegistry) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Set the actual domain of the problem's dataset.
setDomainString(String) - Method in interface net.sourceforge.cilib.type.DomainRegistry
Set the value of the string representing the domain.
setDomainString(String) - Method in class net.sourceforge.cilib.type.StringBasedDomainRegistry
Set the value of the string representing the domain.
setDrawValue(Double) - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
setElement(E, int...) - Method in class net.sourceforge.cilib.container.MultiDimensionalArray
Set the element at the provided index.
setEndIndex(int) - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Sets the index where the elements of the pattern ends.
setEntityNumber(int) - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Set the number of entities that are required.
setEntityScore(int, EntityScore) - Method in class net.sourceforge.cilib.games.game.Game
Store the result and fitness for a specific player in the entityscore object
setEntitySelection(SelectionRecipe<Entity>) - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
setEntityType(Entity) - Method in class net.sourceforge.cilib.algorithm.initialisation.ClonedPopulationInitialisationStrategy
Set the prototype entity for the copy process.
setEntityType(Entity) - Method in class net.sourceforge.cilib.algorithm.initialisation.PopulationInitialisationStrategy
Set the entity type to use.
setEntityType(Entity) - Method in class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Set the entity type to use.
setEpochStrategy(EpochStrategy) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setEpsilon(double) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
setEpsilon(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm parameter variable epsilon.
setErodedShapeBlocks(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setError(double) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumFunctionMinimisationError
 
setErrorDg(NNError[]) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setErrorDt(NNError[]) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setErrorDv(NNError[]) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setErrorNoOutputs(NNError[], int) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setErrorNoPatterns(NNError[], int) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setErrorThreshold(double) - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Set the error threshold
setEvaluationStrategy(EvaluationMediator) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
setEvaluator(StateEvaluator) - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
setEvaluator(MappingEvaluator) - Method in class net.sourceforge.cilib.problem.mappingproblem.MappingProblem
This function sets the evaluator to use.
setExplorerBeeUpdateLimit(ControlParameter) - Method in class net.sourceforge.cilib.boa.ABC
 
setExplorerBeeUpdateLimit(ControlParameter) - Method in class net.sourceforge.cilib.boa.bee.ExplorerBee
 
setExpression(String) - Method in class net.sourceforge.cilib.functions.continuous.ExpressionFunction
Set the parseable function.
setFailureCountThreshold(int) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the count of failure threshold.
setFDA1_f(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Sets the f1 function that is used in FDA1 problem
setFDA1_f(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Sets the f1 function that is used in the FDA1 problem
setFDA1_g(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Sets the g function
setFDA1_g(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Sets the g function that is used in the FDA1 problem
setFDA1_g(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Sets the g function that is used in FDA1 problem
setFDA1_g(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_h
Sets the g function that is used in the FDA1 problem
setFDA1_h(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Sets the h function
setFDA1_h(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_f2
Sets the f1 function that is used in the FDA1 problem
setFDA2_f(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Sets the f function used with FDA2 problem
setFDA2_f(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
sets the f function that is used the FDA2 function
setFDA2_g(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Sets the g function
setFDA2_g(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Sets the g function that is used in the FDA2 problem
setFDA2_g(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Sets the g function used in FDA2 problem
setFDA2_g(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
Sets the g function that is used in the FDA2 function
setFDA2_h(FunctionMinimisationProblem) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Sets the h function
setFDA2_h(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_f2
Sets the f1 function that is used in the FDA2 problem
setFdrMaximizerAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
 
setFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setFile(String) - Method in class net.sourceforge.cilib.problem.dataset.LocalDataSet
Set the name of the file that represents this dataset on disk.
setFile(String) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Sets the output file to record the measurements in.
setFitness(Fitness) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Explicitly set the current fitness value.
setFitness(Fitness) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
setFitnessCalc(RNAFitness) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
 
setFitnessCalculation(FitnessCalculationStrategy) - Method in class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
setFitnessCalculator(RNAFitness) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAOptimisationProblem
 
setFitnessCalculator(FitnessCalculator) - Method in class net.sourceforge.cilib.entity.AbstractEntity
Set the FitnessCalculator for the current Entity.
setFitnessSharingStrategy(FitnessSharingStrategy) - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
setFitnessUpdateStrategy(FitnessUpdateStrategy) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
setForageLimit(ControlParameter) - Method in class net.sourceforge.cilib.boa.ABC
 
setForageLimit(ControlParameter) - Method in class net.sourceforge.cilib.boa.bee.WorkerBee
Set the forage limit.
setFullColumns(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer
 
setFunction(Function) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
setFunction(Function) - Method in class net.sourceforge.cilib.functions.continuous.decorators.InvertedFunctionDecorator
 
setFunction(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
Set the decorated function.
setFunction(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Set the wrapped function.
setFunction(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
setFunction(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Set the function that is to be decorated.
setFunction(ContinuousFunction) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
 
setFunction(Function) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
setFunction(Function) - Method in class net.sourceforge.cilib.measurement.single.GenericFunctionMeasurement
Set the function.
setFunction(Function) - Method in class net.sourceforge.cilib.problem.DeratingFunctionMaximisationProblem
This method sets the function to evaluate (that is the search space).
setFunction(Function) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setFunction(Function) - Method in class net.sourceforge.cilib.problem.FunctionOptimisationProblem
Sets the function that is to be optimised.
setFunction(FunctionDimensionMapping) - Method in class net.sourceforge.cilib.problem.mappingproblem.FunctionDimensionMappingProblem
 
setGame(Game) - Method in class net.sourceforge.cilib.problem.coevolution.GameLearningOptimizationProblem
 
setGapExtensionPenalty(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty
 
setGapOpeningPenalty(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty
 
setGapPenalty(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
setGapPenaltyMethod(GapPenaltiesMethod) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Set the strategy to penalize gaps.
setGapPenaltyMethod(GapPenaltiesMethod) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
setGenerator(Random) - Method in class net.sourceforge.cilib.games.random.GameSeedingStrategy
 
setGlobalGuideSelectionStrategy(GuideSelectionStrategy) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
setGlobalGuideUpdateStrategy(GuideUpdateStrategy) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
setGradientOptimisationProblem(GradientOptimisationProblem) - Method in interface net.sourceforge.cilib.algorithm.GradientOptimisationAlgorithm
Sets the optimisation problem to be solved.
setGradientOptimisationProblem(GradientOptimisationProblem) - Method in class net.sourceforge.cilib.pso.LFPSO
 
setGradientOptimisationProblem(GradientOptimisationProblem) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
setGridHeight(int) - Method in class net.sourceforge.cilib.games.states.GridGameState
 
setGridWidth(int) - Method in class net.sourceforge.cilib.games.states.GridGameState
 
setHarmonyMemoryConsideringRate(ControlParameter) - Method in class net.sourceforge.cilib.hs.HS
Set the considering rate for the harmony memory.
setHarmonyMemorySize(ControlParameter) - Method in class net.sourceforge.cilib.hs.HS
Set the size of the harmony memory.
setHasMemory(boolean) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
 
setHeight(int) - Method in class net.sourceforge.cilib.games.game.GridGame
 
setHeight(int) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
setHiddenNodes(int) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
setHiddenNodes(int) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
setHigherDimensionDistanceMatrix(double[][]) - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
 
setHOFSize(int) - Method in class net.sourceforge.cilib.coevolution.selection.SelectHOFPoolSelectionStrategy
 
setHoles(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setHorizontalReflection(boolean) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Invoking this method sets horizontalReflection to true.
setHorizontalReflection(String) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Invoking this method sets horizontalReflection to true.
setHorizontalScale(double) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Set the value of the horizontal scale.
setHorizontalShift(double) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Set the amount of horizontal shift to be applied to the function during evaluation.
setI(int) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable i.
setId(String) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
setId(String) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Set the id for this Topology.
setId(String) - Method in interface net.sourceforge.cilib.entity.Topology
Set the id for this Topology.
setIndex(int) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
setInertiaWeight(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Set the ControlParameter for the inertia weight of the velocity update equation.
setInitialisationStrategy(PopulationInitialisationStrategy) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
 
setInitialisationStrategy(PopulationInitialisationStrategy) - Method in class net.sourceforge.cilib.algorithm.population.PopulationBasedAlgorithm
Set the initialisation strategy to use for the initialisation of the population.
setInitialisationStrategy(PopulationInitialisationStrategy) - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Set the PopulationInitialisationStrategy to be used.
setInitializationStrategy(PredPreyPositionInitializationStrategy) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
setInnerProblem(FunctionOptimisationProblem) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
Sets the problem that will be used to optimise the clustering.
setInput(Vector) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
setInput(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
setInput(NeuronConfig[]) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setInputFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
setInputWeights(Weight[]) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setInt(int, int) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
setInt(int) - Method in class net.sourceforge.cilib.type.types.Bit
Set the state of the current Bit object.
setInt(String) - Method in class net.sourceforge.cilib.type.types.Bit
Set the integer value with the provided value.
setInt(int, int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Set the value at index to the specified value.
setInt(int) - Method in class net.sourceforge.cilib.type.types.Int
Set the integer value with the provided value.
setInt(String) - Method in class net.sourceforge.cilib.type.types.Int
Set the integer value with the provided value.
setInt(int) - Method in class net.sourceforge.cilib.type.types.Long
Set the integer value with the provided value.
setInt(String) - Method in class net.sourceforge.cilib.type.types.Long
Set the integer value with the provided value.
setInt(int) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the integer value with the provided value.
setInt(String) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the integer value with the provided value.
setInt(int) - Method in class net.sourceforge.cilib.type.types.Real
Set the integer value with the provided value.
setInt(String) - Method in class net.sourceforge.cilib.type.types.Real
Set the integer value with the provided value.
setIntialisationDomain(String) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
setItem(int, int, GameItem) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
setItem(int, int, GameItem) - Method in class net.sourceforge.cilib.games.states.GridGameState
Set an item at a specific index in the matrix
setItemToken(Enum) - Method in class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
 
setIterationModulus(int) - Method in class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
set the iteration at which the seeds will be regenerated.
setIterationsModulus(int) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.EnvironmentChangeDetectionStrategy
 
setIterationStrategy(IterationStrategy) - Method in class net.sourceforge.cilib.ec.EC
Set the current IterationStrategy.
setIterationStrategy(IterationStrategy<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
setIterationStrategy(IterationStrategy<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Set the IterationStrategy to be used.
setIterationStrategy(IterationStrategy<PSO>) - Method in class net.sourceforge.cilib.pso.PSO
Set the IterationStrategy to be used.
setJ(int) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable j.
setJustEvaluate(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
setJustEvaluate(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
setK(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setKappa(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Set the Kappa control parameter.
setKey(K) - Method in class net.sourceforge.cilib.container.Pair
 
setKey(E) - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Set the current key for the Tree.
setKey(E) - Method in class net.sourceforge.cilib.type.types.container.NaryTree
Set the current key for the Tree.
setKey(E) - Method in interface net.sourceforge.cilib.type.types.container.Tree
Set the current key for the Tree.
setKnowledgeTransferStrategy(KnowledgeTransferStrategy) - Method in class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
setKnowStructure(int[]) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
setKoffset(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setLandingHeight(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setLayer1size(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setLayer2size(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setLayer3size(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setLearningRate(Double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
setLearningRate(double) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setLinearScale(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFogel
 
setLinearScale(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MatchFogel
 
setLocalGuideSelectionStrategy(GuideSelectionStrategy) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
setLocalGuideUpdateStrategy(GuideUpdateStrategy) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
setLocation(double) - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
setLoction(ItemLocation) - Method in class net.sourceforge.cilib.games.items.GameItem
 
setLong(long) - Method in class net.sourceforge.cilib.type.types.Long
 
setLoopStatus(boolean) - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearDistanceMetric
Sets the looping status.
setLoseValue(Double) - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
setLowerBound(double) - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Set the value of the lower bound.
setLowerBound(double) - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyIncreasingControlParameter
Set the value of the lower bound.
setLowerBound(double) - Method in class net.sourceforge.cilib.controlparameter.LinearIncreasingControlParameter
Set the value of the lower bound.
setLowerBound(ControlParameter) - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
setM(int) - Method in class net.sourceforge.cilib.functions.continuous.Michalewicz12
Set the value for M.
setM(int) - Method in class net.sourceforge.cilib.functions.continuous.unconstrained.Michalewicz
Set the value of M.
setM(int) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
 
setMappingProblem(MappingProblem) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearCompEvaluator
Called by MappingProblem.setEvaluator in order to establisg bi-directional communication.
setMappingProblem(MappingProblem) - Method in class net.sourceforge.cilib.problem.mappingproblem.CurvilinearDistEvaluator
Called by MappingProblem.setEvaluator in order to establisg bi-directional communication.
setMappingProblem(MappingProblem) - Method in interface net.sourceforge.cilib.problem.mappingproblem.DistanceMetric
Gets called by CurvilinearDistEvaluator to indicate the precice problem to make use of.
setMappingProblem(MappingProblem) - Method in class net.sourceforge.cilib.problem.mappingproblem.KruskalEvaluator
 
setMappingProblem(MappingProblem) - Method in class net.sourceforge.cilib.problem.mappingproblem.LinearDistanceMetric
Gets called by CurvilinearDistEvaluator to indicate the precice problem to make use of.
setMappingProblem(MappingProblem) - Method in interface net.sourceforge.cilib.problem.mappingproblem.MappingEvaluator
Gets called when attached to a MappingProblem.
setMatch(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
setMax(double) - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Set the maximum bound value.
setMaxConsecutiveMinChange(int) - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
sets the maximum consecutive evalutions that an algorithm can improve less then the minimum.
setMaxDepth(int) - Method in class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
setMaxDistance(int) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
 
setMaximumFitnessEvaluations(int) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumFitnessEvaluations
 
setMaximumIterations(int) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumIterations
Set the maximum number of iterations.
setMaximumVariance(ControlParameter) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.VeenmanReindersBackerIndex
 
setMaxIterations(int) - Method in class net.sourceforge.cilib.games.game.predatorprey.PredatorPreyGame
 
setMaxIterations(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setMaxLines(int) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
setMaxSequenceGapsAllowed(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Set the maximm number of allowable gaps.
setMaxSequenceGapsAllowed(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
setMaxWellDepth(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setMean(double) - Method in class net.sourceforge.cilib.entity.operators.mutation.GaussianMutationStrategy
 
setMeasurement(Measurement) - Method in class net.sourceforge.cilib.xml.XMLMeasurementFactory
 
setMeasures(PostMeasurementSuite) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
setMediator(EvaluationMediator) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.NNFunctionAdapter
 
setMin(double) - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Set the minimum bound value.
setMinDistance(int) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.MinMaxDistanceInitializationStrategy
 
setMinimumChange(double) - Method in class net.sourceforge.cilib.stoppingcondition.OptimiserStalled
sets the minimum percentage that the new best location must be from the previous.
setMinimumDiversity(ControlParameter) - Method in class net.sourceforge.cilib.stoppingcondition.MinimumDiversity
Any ControlParameter can be used to control the MinimumDiversity.minimumDiversity value.
setMismatch(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
setMomentum(Double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
setMomentum(double) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setMutationProbability(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
setMutationStrategy(MutationStrategy) - Method in class net.sourceforge.cilib.ec.iterationstrategies.GeneticAlgorithmIterationStrategy
Set the current MutationStrategy and reinitialise the operator pipeline.
setN(int) - Method in class net.sourceforge.cilib.functions.continuous.ShekelN
Set the N vaue for the function.
setN_t(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
sets the severity of change
setN_t(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
sets the severity of change
setNeighbourhoodBest(Particle) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Set the neighbourhood best particle for the current Particle based on the topology of the current particle.
setNeighbourhoodBest(Particle) - Method in interface net.sourceforge.cilib.entity.Particle
Set the current neighbourhood best particle within the current neighbourhood.
setNeighbourhoodBest(Particle) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the neighbourhood best particle for the current Particle based on the topology of the current particle.
setNeighbourhoodBest(Particle) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setNeighbourhoodBest(Particle) - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Set the neighbourhood best particle for the current Particle based on the topology of the current particle.
setNeighbourhoodBestUpdateStrategy(NeighbourhoodBestUpdateStrategy) - Method in interface net.sourceforge.cilib.entity.SocialEntity
Set the NeighbourhoodBestUpdateStrategy to be used by the Entity.
setNeighbourhoodBestUpdateStrategy(NeighbourhoodBestUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the NeighbourhoodBestUpdateStrategy to be used by the Entity.
setNeighbourhoodSize(int) - Method in class net.sourceforge.cilib.entity.topologies.HypercubeTopology
Sets the number particles in the neighbourhood of each particle.
setNeighbourhoodSize(ControlParameter) - Method in class net.sourceforge.cilib.entity.topologies.LBestTopology
Sets the ControlParameter that should be used to determine the number of particles in the neighbourhood of each particle.
setNeuralNetworkTopology(GenericTopology) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
setNoBlocks(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setNoInputs(int) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
setNoInputs(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setNoInputs(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setNoOutputs(int) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
setNoOutputs(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
setNoOutputs(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
setNoPatterns(int) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
setNoPatterns(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
setNoPatterns(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
setNormalisationParameter(NormalisationParameter) - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
setNormalisationParameter(double) - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.NormalisationParameter
 
setNrUpdates(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
setNrUpdates(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
setNucleotides(String) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator
 
setNucleotideString(String) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotideString
 
setNumber(int) - Method in class net.sourceforge.cilib.functions.continuous.FunctionDimensionMapping
 
setNumberOfClusters(int) - Method in class net.sourceforge.cilib.problem.ClusteringProblem
The expert uses this method to set the number of clusters that should be used to optimise this clustering.
setNumberofEntitiesPerList() - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
 
setNumberOfEvaluations(int) - Method in class net.sourceforge.cilib.problem.coevolution.PerformanceEvaluationOptimizationProblem
 
setNumberOfObjects(int) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
setNumberOfOpponents(int) - Method in class net.sourceforge.cilib.coevolution.selection.SelectNOpponentSelectionStrategy
 
setNumberOfSentries(ControlParameter) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
setObjectiveAssignmentStrategy(ObjectiveAssignmentStrategy) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationCriterionBasedAlgorithm
 
setOffset(ControlParameter) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Set the ControlParameter to represent the offset of the function.
setOffset(double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
setOpenProbability(double) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
setOperator(Operator) - Method in class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
 
setOperator(String) - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
This sets the operator to be used within the mutation strategy.
setOperatorPipeline(CompositeOperator) - Method in class net.sourceforge.cilib.algorithm.population.AbstractIterationStrategy
Set the pipeline to be used within the current IterationStrategy.
setOperatorStrategy(MutationOperatorStrategy) - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
setOpponentSelectionStrategy(OpponentSelectionStrategy) - Method in class net.sourceforge.cilib.coevolution.CompetitiveCoevolutionIterationStrategy
 
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.algorithm.Algorithm
Set the optimisation problem to be solved.
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Set the optimisation problem.
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
Set the optimisation problem to be solved.
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Set the optimisation problem to be solved.
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.ec.EC
Set the optimisation problem to be solved.
setOptimisationProblem(OptimisationProblem) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
setOutputActivationFunction(NeuronFunction) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.GenericTopologyBuilder
The type of NeuronFunction to use for output neurons, this may differ from the type used in the hidden layer(s)
setOutputBuffer(SynchronizedOutputBuffer) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
 
setOutputFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.NNOutput
 
setOutputFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.postSimulation.PostMeasurementSuite
 
setOutputFunction(NeuronFunction) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.DotProductNeuronConfig
 
setOutputInterpretationStrategy(NeuralOutputInterpretationStrategy) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
setOutputInterpretationStrategy(NeuralOutputInterpretationStrategy) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
The NeuralOutputInterpretationStrategy should not be set since this class funtions only as a state evaluator.
setOutputNeuron(boolean) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setOutputSensitivityThreshold(double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
setOwnPopulationID(int) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
setP(int) - Method in class net.sourceforge.cilib.functions.clustering.validityindices.MaulikBandyopadhyayIndex
 
setP(double) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
setP(double) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable p.
setParameter(double) - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Set the value of the represented parameter.
setParameter(double) - Method in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Set the value of the represented parameter.
setParameter(double) - Method in interface net.sourceforge.cilib.controlparameter.ControlParameter
Set the value of the represented parameter.
setParameter(double) - Method in class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Set the value of the represented parameter.
setParameter(double) - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Set the value of the parameter in the underlying ControlParameterUpdateStrategy.
setPatternExpression(String) - Method in class net.sourceforge.cilib.problem.dataset.DataSet
Set the regular expression that will be used to split the patterns in the provided DataSet file.
setPatternInputPos(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setPatternRandomizerSeed(long) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setPatternWeight(Weight) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setPCore(double) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
setPerCan(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setPercentage(double) - Method in class net.sourceforge.cilib.pso.particle.initialisation.DomainPercentageVelocityInitialisationStrategy
 
setPercentCan(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setPercentCan(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setPercentGen(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setPercentGen(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setPercentTrain(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setPercentTrain(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setPercentVal(int) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.RandomDistributionStrategy
 
setPerGen(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setPersonalBestUpdateStrategy(PersonalBestUpdateStrategy) - Method in interface net.sourceforge.cilib.entity.Particle
Set the strategy to perform personal best updates.
setPersonalBestUpdateStrategy(PersonalBestUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the strategy to perform personal best updates.
setPerTrain(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setPerVal(int) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setPileHeight(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setPitchAdjustingRate(ControlParameter) - Method in class net.sourceforge.cilib.hs.HS
Set the pitch adjusting rate.
setPlayerID(int) - Method in class net.sourceforge.cilib.games.agent.Agent
 
setPopulationCenter(CenterInitialisationStrategy) - Method in class net.sourceforge.cilib.measurement.single.diversity.Diversity
 
setPopulations(List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
Set the list of PopulationBasedAlgorithm instances that the MultiPopulationBasedAlgorithm should maintain.
setPopulationSelection(SelectionRecipe<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
setPopulationSize(int) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
setPopulationSize(int) - Method in class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
setPosition(Vector) - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Sets the bee's position (contents).
setPosition(Vector) - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Sets the bee's position (contents).
setPosition(Vector) - Method in class net.sourceforge.cilib.games.items.GridLocation
Set the position of this GridLocation to the given vector
setPositionInitialisationStrategy(PositionInitialisationStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the PositionInitialisationStrategy to be used.
setPositionThreshold(float) - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
setPositionUpdateStrategy(PositionUpdateStrategy) - Method in interface net.sourceforge.cilib.entity.Particle
Set the PositionUpdateStrategy to use for particle position updates.
setPositionUpdateStrategy(PositionUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the PostionUpdateStrategy for the Particle.
setPostMeasuresFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setPrecision(int) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
setPrecision(int) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
setPredLocation(ItemLocation) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
 
setPreviousChange(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
setPreyLocation(ItemLocation) - Method in class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
 
setProblem(Problem) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkController
Deprecated.  
setProblem(Problem) - Method in class net.sourceforge.cilib.xml.XMLProblemFactory
 
setProblemDataFile(String) - Method in class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
setProgressIndicator(StoppingCondition) - Method in class net.sourceforge.cilib.xml.XMLStoppingConditionFactory
 
setProperties(Blackboard<Enum<?>, Type>) - Method in class net.sourceforge.cilib.entity.AbstractEntity
Set the properties for the current Entity.
setProperties(Blackboard<Enum<?>, Type>) - Method in interface net.sourceforge.cilib.entity.CandidateSolution
Set the Blackboard defining the properties of the CandidateSolution.
setProperties(Blackboard<Enum<?>, Type>) - Method in class net.sourceforge.cilib.entity.CandidateSolutionMixin
Set the Blackboard defining the properties of the CandidateSolution.
setProperties(Blackboard<Enum<?>, Type>) - Method in interface net.sourceforge.cilib.entity.Entity
Set the properties for the current Entity.
setPrototypeError(NNError) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
setPrototypeParticle(Particle) - Method in class net.sourceforge.cilib.pso.LFPSO
 
setPrototypeWeight(Weight) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologybuilders.FFNNgenericTopologyBuilder
 
setPruningSelection(SelectionRecipe<OptimisationSolution>) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
setPSO(PSO) - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
setQuitAnywayAfterIterations(int) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness
 
setRadius(double) - Method in class net.sourceforge.cilib.functions.continuous.MaximumDeratingFunction1
Set the value of the radius.
setRadius(double) - Method in class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
 
setRand1(RandomNumber) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the first RandomNumber.
setRand2(RandomNumber) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the second RandomNumber.
setRand3(RandomNumber) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the third RandomNumber.
setRandom(Random) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setRandom(Random) - Method in class net.sourceforge.cilib.util.selection.recipes.RankBasedSelection
Set the random number generator to use.
setRandomComponent(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
setRandomGenerator(Random) - Method in class net.sourceforge.cilib.math.random.RandomNumber
Set the random number generator to be used.
setRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
setRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Set the random number generator to use.
setRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Set the random number generator to use.
setRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Set the random number generator to use.
setRandomiser(Random) - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Set the Random to be used.
setRandomiser(Random) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
setRandomiser(Random) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
setRandomizer(GameSeedingStrategy) - Method in class net.sourceforge.cilib.games.states.GameState
 
setRandomNumber(RandomNumber) - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
setRandomNumber(RandomNumber) - Method in class net.sourceforge.cilib.entity.operators.mutation.MutationStrategy
 
setRandomNumberGenerator(Random) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentriesDetectionStrategy
 
setRange(String) - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Set the range of the parameter.
setRange(double) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
setReal(double) - Method in class net.sourceforge.cilib.type.types.Bit
Set the state of the Bit object using value as input.
setReal(String) - Method in class net.sourceforge.cilib.type.types.Bit
Set the real value with the provided value.
setReal(int, double) - Method in class net.sourceforge.cilib.type.types.container.Vector
Set the value at index to the specified value.
setReal(double) - Method in class net.sourceforge.cilib.type.types.Int
Set the real value with the provided value.
setReal(String) - Method in class net.sourceforge.cilib.type.types.Int
Set the real value with the provided value.
setReal(double) - Method in class net.sourceforge.cilib.type.types.Long
Set the real value with the provided value.
setReal(String) - Method in class net.sourceforge.cilib.type.types.Long
Set the real value with the provided value.
setReal(double) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the real value with the provided value.
setReal(String) - Method in class net.sourceforge.cilib.type.types.Numeric
Set the real value with the provided value.
setReal(double) - Method in class net.sourceforge.cilib.type.types.Real
Set the real value with the provided value.
setReal(String) - Method in class net.sourceforge.cilib.type.types.Real
Set the real value with the provided value.
setReevaluationRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Set the ratio of entities that should be reevaluated.
setReevaluationRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReevaluationReactionStrategy
Set the ratio of entities that should be reevaluated.
setReinitialisationRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.PartialReinitialisationResponseStrategy
 
setReinitializationRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.DualReactionStrategy
Set the ratio of entities that should be reinitialized.
setReinitializationRatio(double) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.ReinitializationReactionStrategy
Set the ratio of entities that should be reinitialized.
setRemovedLines(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setResolution(int) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Sets the resolution of the results.
setResponseStrategy(EnvironmentChangeResponseStrategy<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.pso.dynamic.DynamicIterationStrategy
Set the current EnvironmentChangeResponseStrategy to use.
setRestarts(int) - Method in class net.sourceforge.cilib.stoppingcondition.MaximumRestarts
 
setRho(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the value for rho.
setRhoContractCoefficient(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the contraction coefficient value.
setRhoExpandCoefficient(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the value of the coefficient of expansion.
setRhoLowerBound(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the lower-bound value for rho.
setRNAFolder(RNAFolder) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Set the RNAFolder to use.
setRotationMatrix() - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
setRotationProbability(ControlParameter) - Method in class net.sourceforge.cilib.functions.continuous.decorators.RotatedFunctionDecorator
 
setRowTransitions(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setS(int) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable s.
setSamples(int) - Method in class net.sourceforge.cilib.simulator.MeasurementSuite
Sets the number of samples to take for each measurement.
setSampleSetSize(int) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setScaleStrategy(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.mutation.CauchyMutationStrategy
 
setScoringMethod(ScoringMethod) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
 
setScoringMethod(ScoringMethod) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
 
setScoringStrategy(GameScoringStrategy) - Method in class net.sourceforge.cilib.games.game.Game
Set the GameScoringStrategy for this game.
setSeed(long) - Method in class net.sourceforge.cilib.games.random.ListSeedingStrategy
Set a seed value to use
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.KnuthSubtractive
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.MersenneTwister
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.RANLUX
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.Tausworthe
 
setSeed(long) - Method in class net.sourceforge.cilib.math.random.generator.ZiffGFSR4
setSeederStrategy(SeedSelectionStrategy) - Static method in class net.sourceforge.cilib.math.random.generator.Seeder
Set the SeedSelectionStrategy to use.
setSeedingStrategy(GameSeedingStrategy) - Method in class net.sourceforge.cilib.games.game.Game
Set the seeding strategy of the game, this will determine how many and when unique games are played.
setSeedValue(long) - Method in class net.sourceforge.cilib.games.random.FixedSeedStrategy
set the specified seed value to use
setSelectFromOwnPopulation(boolean) - Method in class net.sourceforge.cilib.coevolution.selection.OpponentSelectionStrategy
 
setSelectionPercentage(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.selection.ElitistSelectionStrategy
Set the percentage for the selection.
setSelectionStrategy(SelectionStrategy) - Method in class net.sourceforge.cilib.entity.operators.crossover.CrossoverStrategy
 
setSentries(int) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
setSequences(String, String) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.DynamicProgramming
 
setShapeLeftGrid() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisGameState
Set the current AbstractShape as far to the left of the current grid as it can go
setShapeTopGrid() - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
Set this shape at the top of the grid
setShuffleRandomizer(Random) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
setSigmoid(Sigmoid) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
Set the sigmoid function to use.
setSimulation(int) - Method in class net.sourceforge.cilib.simulator.NoProgress
 
setSimulation(int) - Method in interface net.sourceforge.cilib.simulator.ProgressListener
Indicates on which event we are.
setSimulation(int) - Method in class net.sourceforge.cilib.simulator.ProgressText
 
setSkipValue(int) - Method in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
setSocial(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Set the social component ControlParameter.
setSocialAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
setSocialAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Set the social acceleration parameter.
setSocialAcceleration(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Set the ControlParameter for the social component.
setSocialRandomGenerator(Random) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
 
setSplitStrategy(SplitStrategy) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
setStandardVelocityUpdate(StandardVelocityUpdate) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
setStartingPos(String) - Method in class net.sourceforge.cilib.functions.discrete.KnightsTour
Set the starting position on the board.
setStartPlayer(int) - Method in class net.sourceforge.cilib.games.game.Game
Re-arrange the players in the player vector to put a new agent first
setState(Algorithm, StateAwareMeasurement) - Method in class net.sourceforge.cilib.measurement.MeasurementStateManager
Restore the current state of the measurement which is assigned to the provided algorithm instance.
setState(MeasurementMemento) - Method in class net.sourceforge.cilib.measurement.StateAwareMeasurement
Set the state of the Measurement based on the provided instance.
setStateAware(boolean) - Method in class net.sourceforge.cilib.measurement.StateAwareMeasurement
Set the state of the measurement.
setStateInputStrategy(NeuralStateInputStrategy) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
setStateInputStrategy(NeuralStateInputStrategy) - Method in class net.sourceforge.cilib.games.agent.state.evaluation.NeuralStateEvaluator
setSteepness(ControlParameter) - Method in class net.sourceforge.cilib.functions.activation.Sigmoid
Set the ControlParameter to represent the steepness of the function.
setString(String) - Method in class net.sourceforge.cilib.type.types.StringType
Set the contained String value.
setSuccessCountThreshold(int) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Set the threshold of success count value.
setSumWells(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setTabSize(int) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
setTarget(Vector) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNPattern
 
setTarget(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
setTarget(Particle) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setTargetAlgorithm(Algorithm) - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Sets the target optimisation algorithm that is subject to restarting.
setTargetEntity(Entity) - Method in class net.sourceforge.cilib.entity.visitor.ClosestEntityVisitor
Set the entity for which the calculations are based on.
setTargetRandomString(String) - Method in class net.sourceforge.cilib.functions.discrete.BitStringMatcher
Set the target random bit string to match.
setTargetSolution(String) - Method in class net.sourceforge.cilib.measurement.single.ConvergedDimensions
Set the target solution string representation
setTargetVectorSelectionStrategy(SelectionStrategy) - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Set the SelectionStrategy used to select the target vector within the DE.
setTau(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
sets the iteration number
setTau(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
sets the iteration number
setTau_t(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1.FDA1_g
sets the frequency of change
setTau_t(int) - Method in class net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2.FDA2_h
sets the frequency of change
setTestingSet(List<Double[]>) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setTestingSetPercentage(double) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setTheta(double) - Method in class net.sourceforge.cilib.pso.dynamic.detectionstrategies.RandomSentryDetectionStrategy
Deprecated.  
setThreshold(double) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
setTimeStepMap(boolean[]) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setTminus1Output(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.neuron.NeuronConfig
 
setToken(Enum<?>) - Method in class net.sourceforge.cilib.games.items.GameItem
 
setTopology(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Set the Topology for the population-based algorithm.
setTopology(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.boa.ABC
Set the Topology for the population-based algorithm.
setTopology(Topology) - Method in class net.sourceforge.cilib.coevolution.CoevolutionAlgorithm
 
setTopology(Topology) - Method in class net.sourceforge.cilib.ec.EC
Set the Topology for the population-based algorithm.
setTopology(NeuralNetworkTopology) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTrainingStrategy
 
setTopology(NeuralNetworkTopology) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setTopology(NeuralNetworkTopology) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.measurements.AreaUnderROC
 
setTopology(NeuralNetworkTopology) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkProblem
Deprecated.  
setTopology(NeuralNetworkTopology) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.TrainingStrategy
 
setTopology(GenericTopology) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
setTopology(GenericTopology) - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
setTopology(NeuralNetworkTopology) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
setTopology(Topology) - Method in class net.sourceforge.cilib.pso.PSO
Sets the particle topology used.
setTopologyBuilder(GenericTopologyBuilder) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
setTournamentSize(ControlParameter) - Method in class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Set the size of the tournament.
setTournamentSize(ControlParameter) - Method in class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Set the size of the tournament.
setTrainer(TrainingStrategy) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
setTrainingSet(List<Double[]>) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setTrainingSetPercentage(double) - Method in class net.sourceforge.cilib.problem.FunctionLearningProblem
 
setTraversalStrategy(StateTraversalStrategy) - Method in class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
 
setTrialVectorCreationStrategy(CreationStrategy) - Method in class net.sourceforge.cilib.ec.iterationstrategies.DifferentialEvolutionIterationStrategy
Set the strategy to create trial vectors.
setTurbulenceProbability(ControlParameter) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.NearestBoundaryConstraint
Set the turbulence probability with the provided ControlParameter.
setUpperBound(double) - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Set the value for the upper bound.
setUpperBound(double) - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyDecreasingControlParameter
Set the value for the upper bound.
setUpperBound(double) - Method in class net.sourceforge.cilib.controlparameter.LinearDecreasingControlParameter
Set the value for the upper bound.
setUpperBound(ControlParameter) - Method in class net.sourceforge.cilib.pso.particle.initialisation.RandomBoundedInitialVelocityStrategy
 
setUseCount(int) - Method in class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
This method sets the number of seeds to repeatedly use in the list for the specified interval
setValue(V) - Method in class net.sourceforge.cilib.container.Pair
 
setValue(ArrayList<Double>) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
setValue(String) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
Helper method.
setValue(Object) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NNError
 
setValue(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
setValue(Object) - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
setVariance(ControlParameter) - Method in class net.sourceforge.cilib.functions.continuous.decorators.NoisyFunctionDecorator
 
setVelocityDampingFactor(ControlParameter) - Method in class net.sourceforge.cilib.problem.boundaryconstraint.DeflectionBoundaryConstraint
Set the control parameter to be used for the velocity damping factor.
setVelocityInitialisationStrategy(VelocityInitialisationStrategy) - Method in interface net.sourceforge.cilib.entity.Particle
Set the initialisation strategy for the Particles velocity.
setVelocityInitialisationStrategy(VelocityInitialisationStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the velocityInitialisationStrategy.
setVelocityThreshold(float) - Method in class net.sourceforge.cilib.pso.DissipativeStep
 
setVelocityUpdate(VelocityUpdateStrategy) - Method in class net.sourceforge.cilib.pso.LFPSO
 
setVelocityUpdateStrategy(VelocityUpdateStrategy) - Method in interface net.sourceforge.cilib.entity.Particle
Set the VelocityUpdateStrategy to be used during velocity updates.
setVelocityUpdateStrategy(VelocityUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Set the velocity updating strategy for the particle.
setVelocityUpdateStrategy(VelocityUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BestMatch
Set the printing verbosity in this ScoringMethod.
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BLOSUM62SoP
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFogel
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapFourFour
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MatchFogel
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.PAM250SoP
 
setVerbose(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
setVerticalReflection(boolean) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Invoking this method sets verticalReflection to true.
setVerticalReflection(String) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ReflectedFunctionDecorator
Invoking this method sets verticalReflection to true.
setVerticalScale(double) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ScaledFunctionDecorator
Set the value of the vertical scale.
setVerticalShift(double) - Method in class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
Set the amount of vertical shift to be applied to the function during evaluation.
setVisitor(TopologyVisitor) - Method in class net.sourceforge.cilib.measurement.single.diversity.normalisation.TopologyBasedNormalisation
Set the TopologyVisitor to be decorated.
setVMax(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Set the maximum velocity parameter.
setVMax(ControlParameter) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Set the ControlParameter for the vMax parameter.
setW1(ControlParameter) - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Set the weight that influences how much the intra-cluster-distance will contribute to the final fitness.
setW2(ControlParameter) - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Set the weight that influences how much the inter-cluster-distance will contribute to the final fitness.
setW3(ControlParameter) - Method in class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
Set the weight that influences how much the Quantisation Error will contribute to the final fitness.
setWasNeighbourhoodBest(boolean) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
Sets the algorithm state variable indicating whether the particle was the neighbourhood best in the previous iteration of the algorithm.
setWeighing(Weighing<E>) - Method in class net.sourceforge.cilib.util.selection.recipes.RouletteWheelSelection
Set the weighing strategy
setWeight(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BLOSUM62SoP
 
setWeight(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.PAM250SoP
 
setWeight(boolean) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
setWeight(ArrayList<Double>) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
 
setWeight(String) - Method in class net.sourceforge.cilib.functions.discrete.KnapSack
Helper method.
setWeight(double) - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Set the weight value for the current Entry within the Selection.
setWeight(double) - Method in class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Set the weight value.
setWeight1(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Set the value of weight1.
setWeight1(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
setWeight2(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
Set the value of weight2.
setWeight2(double) - Method in class net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
 
setWeightedBlocks(boolean) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
setWeightInitialiser(GenericTopologyVisitor) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
setWeights(Vector) - Method in class net.sourceforge.cilib.games.agent.NeuralAgent
 
setWeights(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
setWeights(Vector) - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkTopology
 
setWeights(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.generic.GenericTopology
 
setWeights(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.SpecificWeightInitialiser
 
setWeights(Vector) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightExtractingVisitor
 
setWeightValue(Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
setWidth(int) - Method in class net.sourceforge.cilib.games.game.GridGame
 
setWidth(int) - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
 
setWinValue(Double) - Method in class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
setWorkerBeePercentage(ControlParameter) - Method in class net.sourceforge.cilib.boa.ABC
 
shareBase(NucleotidePair) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
Returns true if the pairs contains the same base.
ShekelN - Class in net.sourceforge.cilib.functions.continuous
 
ShekelN() - Constructor for class net.sourceforge.cilib.functions.continuous.ShekelN
Creates a new instance of Step.
ShekelsFoxholes - Class in net.sourceforge.cilib.functions.continuous
ShekelsFoxholes function.
ShekelsFoxholes() - Constructor for class net.sourceforge.cilib.functions.continuous.ShekelsFoxholes
 
ShiftedFunctionDecorator - Class in net.sourceforge.cilib.functions.continuous.decorators
ShiftedFunctionDecorator.
ShiftedFunctionDecorator() - Constructor for class net.sourceforge.cilib.functions.continuous.decorators.ShiftedFunctionDecorator
 
Shir - Class in net.sourceforge.cilib.functions.continuous
The Damavandi function obtained from O.M.
Shir() - Constructor for class net.sourceforge.cilib.functions.continuous.Shir
Create an instance of the function.
shouldApply(Problem) - Method in interface net.sourceforge.cilib.problem.changestrategy.ChangeStrategy
Determine whether a change should be applied to the provided problem instance.
shouldApply(Problem) - Method in class net.sourceforge.cilib.problem.changestrategy.IterationBasedChangeStrategy
Determine if a change should be applied to the current problem, based on the current number of iterations that have been completed.
shouldApply(Problem) - Method in class net.sourceforge.cilib.problem.changestrategy.NoChangeStrategy
Do not change the search space of the provided problem instance.
Shubert - Class in net.sourceforge.cilib.functions.continuous
Shubert function.
Shubert() - Constructor for class net.sourceforge.cilib.functions.continuous.Shubert
Create an instance of Shubert.
shuffleRandomizer - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.CrossValidationStrategy
 
shuffleTrainingSet() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkData
 
shuffleTrainingSet() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
Shuffle the training set.
Sigmoid - Class in net.sourceforge.cilib.functions.activation
The generalised sigmoid function.
Sigmoid() - Constructor for class net.sourceforge.cilib.functions.activation.Sigmoid
Create a new instance of Sigmoid.
SigmoidOutputFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
Deprecated. This class should be replaced by Sigmoid
SigmoidOutputFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.SigmoidOutputFunction
Deprecated.  
Similarity - Class in net.sourceforge.cilib.bioinf.sequencealignment
SIMILARITY SCORING FUNCTION Score all possible pairwise combinations in column Requires (N * (N-1))/2 comparisons for N sequences Total score = sum of score for each column SoP routine has been optimized for speed.
Similarity() - Constructor for class net.sourceforge.cilib.bioinf.sequencealignment.Similarity
 
SimpleCharStream - Class in net.sourceforge.cilib.type.parser
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(Reader, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(Reader) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleCharStream(InputStream) - Constructor for class net.sourceforge.cilib.type.parser.SimpleCharStream
Constructor.
SimpleNode - Class in net.sourceforge.cilib.type.parser
 
SimpleNode(int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleNode
 
SimpleNode(DomainParser, int) - Constructor for class net.sourceforge.cilib.type.parser.SimpleNode
 
SimpleRNAFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
SimpleRNAFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.SimpleRNAFitness
 
SimpleRNAFitness(SimpleRNAFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.SimpleRNAFitness
 
Simulation - Class in net.sourceforge.cilib.simulator
This class represents a single simulation experiment.
Simulation(AlgorithmFactory, ProblemFactory, MeasurementSuite) - Constructor for class net.sourceforge.cilib.simulator.Simulation
Creates a new instance of Simulation given an algorithm factory, a problem factory and a measurement suite.
SimulationException - Exception in net.sourceforge.cilib.simulator
 
SimulationException() - Constructor for exception net.sourceforge.cilib.simulator.SimulationException
Creates a new instance of SimulationException without detail message.
SimulationException(String) - Constructor for exception net.sourceforge.cilib.simulator.SimulationException
Constructs an instance of SimulationException with the specified detail message.
SingleAgentMeasure - Class in net.sourceforge.cilib.games.measurement
This defines an AgentMeasure that only records information for a specified Agent As specified by the given GameToken
SingleAgentMeasure() - Constructor for class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
 
SingleAgentMeasure(Enum) - Constructor for class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
 
SingleAgentMeasure(SingleAgentMeasure) - Constructor for class net.sourceforge.cilib.games.measurement.SingleAgentMeasure
 
SingleIteration - Class in net.sourceforge.cilib.stoppingcondition
 
SingleIteration() - Constructor for class net.sourceforge.cilib.stoppingcondition.SingleIteration
Creates a new instance of SingleIteration.
SingleIteration(SingleIteration) - Constructor for class net.sourceforge.cilib.stoppingcondition.SingleIteration
 
SinglePopulationBasedAlgorithm - Class in net.sourceforge.cilib.algorithm.population
Base class for algorithms that focus on a single populations of entities.
SinglePopulationBasedAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Create an empty PopulationBasedAlgorithm.
SinglePopulationBasedAlgorithm(SinglePopulationBasedAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.population.SinglePopulationBasedAlgorithm
Create a copy of the provided instance.
singleSelect() - Method in class net.sourceforge.cilib.util.selection.Selection
Obtain the first result of the selection.
singleSelect() - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
SingularAlgorithm - Class in net.sourceforge.cilib.algorithm
This class is the abstract base for all algorithms that do not fall within the normal Computational Intelligence type of algorithm.
SingularAlgorithm() - Constructor for class net.sourceforge.cilib.algorithm.SingularAlgorithm
Create a new instance of SingularAlgorithm.
SingularAlgorithm(SingularAlgorithm) - Constructor for class net.sourceforge.cilib.algorithm.SingularAlgorithm
Create a copy of the provided instance.
SixHumpCamelBack - Class in net.sourceforge.cilib.functions.continuous
SixHumpCamelBack function.
SixHumpCamelBack() - Constructor for class net.sourceforge.cilib.functions.continuous.SixHumpCamelBack
 
size() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
size() - Method in class net.sourceforge.cilib.coevolution.competitors.PopulationCompetitorList
 
size() - Method in interface net.sourceforge.cilib.container.Array
Obtain the current size of the array structure.
size() - Method in class net.sourceforge.cilib.container.BitArray
Returns the actual size used by the BitArray The result returned will be the size + 1.
size() - Method in class net.sourceforge.cilib.container.MultiDimensionalArray
 
size() - Method in class net.sourceforge.cilib.container.SortedList
Determine the size of the current list.
size() - Method in class net.sourceforge.cilib.container.StandardArray
Obtain the current size of the array structure.
size() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
size() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Returns the size of the Topology.
size() - Method in interface net.sourceforge.cilib.entity.Topology
Returns the size of the Topology.
size() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
size() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
size() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
size() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
size() - Method in class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
size() - Method in class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
 
size() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
size() - Method in class net.sourceforge.cilib.type.types.container.AbstractTree
Defines the size of the structure.
size() - Method in class net.sourceforge.cilib.type.types.container.Set
Defines the size of the structure.
size() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Defines the size of the structure.
size() - Method in interface net.sourceforge.cilib.type.types.container.StructuredType
Defines the size of the structure.
size() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Defines the size of the structure.
size() - Method in class net.sourceforge.cilib.type.types.container.Vector
Returns the size of the Vector.
skipValue - Variable in class net.sourceforge.cilib.math.random.generator.quasi.QuasiRandom
 
slowConflictsWith(RNAStem) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
returns true if the stems fail all of four tests.
Sobol - Class in net.sourceforge.cilib.math.random.generator.quasi
Implementation adapted from http://people.scs.fsu.edu/~burkardt/f_src/sobol/sobol.html.
Sobol() - Constructor for class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
Sobol(long) - Constructor for class net.sourceforge.cilib.math.random.generator.quasi.Sobol
 
socialAcceleration - Variable in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
 
SocialBestFitness - Class in net.sourceforge.cilib.util.selection.weighing.entity
Obtain the social best fitness value from a SocialEntity.
SocialBestFitness() - Constructor for class net.sourceforge.cilib.util.selection.weighing.entity.SocialBestFitness
 
SocialBestFitnessComparator<E extends SocialEntity> - Class in net.sourceforge.cilib.entity.comparator
Compare two SocialEntity instances, based on the available social best fitness.
SocialBestFitnessComparator() - Constructor for class net.sourceforge.cilib.entity.comparator.SocialBestFitnessComparator
 
SocialEntity - Interface in net.sourceforge.cilib.entity
An Entity that can recieve information from other Entities.
Solution - Class in net.sourceforge.cilib.measurement.single
 
Solution() - Constructor for class net.sourceforge.cilib.measurement.single.Solution
Default constructor.
Solution(Solution) - Constructor for class net.sourceforge.cilib.measurement.single.Solution
Copy constructor.
Solution - Interface in net.sourceforge.cilib.problem
This is a common abstraction for all solution classes.
SolutionWeighing - Interface in net.sourceforge.cilib.moo.archive.solutionweighing
Weighs an optimisation solution for selection to be either removed from the Archive or selected to be used as guide during the search process.
SortedList<E extends Comparable<? super E>> - Class in net.sourceforge.cilib.container
A collection that always provides a list of elements that is sorted.
SortedList() - Constructor for class net.sourceforge.cilib.container.SortedList
Create a new instance of SortedList without a Comparator defined.
SortedList(Comparator<E>) - Constructor for class net.sourceforge.cilib.container.SortedList
Create a new instance of SortedList with the provided Comparator.
SortedList(SortedList<E>) - Constructor for class net.sourceforge.cilib.container.SortedList
Create a copy of the provided instance.
SortedOrdering<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.ordering
Apply a sorting operation to the provided list, ordering the list naturally from smallest to largest.
SortedOrdering() - Constructor for class net.sourceforge.cilib.util.selection.ordering.SortedOrdering
Create an new instance with the default ordering defined to be an ordering that enforces "natural ordering".
SortedOrdering(Comparator<Selection.Entry<E>>) - Constructor for class net.sourceforge.cilib.util.selection.ordering.SortedOrdering
Create a new instance with the provided comparator as the comparator to use.
SpatialCenterInitialisationStrategy - Class in net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies
TODO: Complete this javadoc.
SpatialCenterInitialisationStrategy() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.centerinitialisationstrategies.SpatialCenterInitialisationStrategy
 
SpatialExtent - Class in net.sourceforge.cilib.measurement.single
Function to calculate the diversity measure, spatial extent as defined by Blackwell
SpatialExtent() - Constructor for class net.sourceforge.cilib.measurement.single.SpatialExtent
 
SpatialExtent(SpatialExtent) - Constructor for class net.sourceforge.cilib.measurement.single.SpatialExtent
 
SpatialRadiusVisitor - Class in net.sourceforge.cilib.entity.visitor
Determine the spatial radius of the visited object.
SpatialRadiusVisitor() - Constructor for class net.sourceforge.cilib.entity.visitor.SpatialRadiusVisitor
 
specialConstructor - Variable in exception net.sourceforge.cilib.type.parser.ParseException
This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
SpecializedPopluationInitialisationStrategy - Class in net.sourceforge.cilib.algorithm.initialisation
Initialise a specialised collection of entity objects.
SpecializedPopluationInitialisationStrategy() - Constructor for class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Create an instance of SpecializedPopluationInitialisationStrategy.
SpecializedPopluationInitialisationStrategy(SpecializedPopluationInitialisationStrategy) - Constructor for class net.sourceforge.cilib.algorithm.initialisation.SpecializedPopluationInitialisationStrategy
Create a copy of the provided instance.
specialToken - Variable in class net.sourceforge.cilib.type.parser.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
SpecificWeightInitialiser - Class in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
 
SpecificWeightInitialiser() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.SpecificWeightInitialiser
 
Spherical - Class in net.sourceforge.cilib.functions.continuous.unconstrained
Spherical function.
Spherical() - Constructor for class net.sourceforge.cilib.functions.continuous.unconstrained.Spherical
Create a new instance of Spherical.
split(OptimisationProblem, CooperativeEntity, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.cooperative.splitstrategies.ImperfectSplitStrategy
 
split(OptimisationProblem, CooperativeEntity, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.cooperative.splitstrategies.IndexedSplitStrategy
 
split(OptimisationProblem, CooperativeEntity, List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.cooperative.splitstrategies.PerfectSplitStrategy
 
split(OptimisationProblem, CooperativeEntity, List<PopulationBasedAlgorithm>) - Method in interface net.sourceforge.cilib.cooperative.splitstrategies.SplitStrategy
Splits up the given OptimisationProblem into sub-problems and assigns all the sub-problems to Algorithms in the population.
SplitCooperativeAlgorithm - Class in net.sourceforge.cilib.cooperative
TODO test this class This class forms that basis for any co-operative optimisation implementations.
SplitCooperativeAlgorithm() - Constructor for class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
Creates a new instance of a SplitCooperativeAglorithm.
SplitCooperativeAlgorithm(SplitCooperativeAlgorithm) - Constructor for class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
splitStrategy - Variable in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
 
SplitStrategy - Interface in net.sourceforge.cilib.cooperative.splitstrategies
The interface used to split up a given OptimisationProblem into sub-problems.
SquaredErrorFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies
 
SquaredErrorFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.SquaredErrorFunction
Create an instance of SquaredErrorFunction.
StandardArray<E> - Class in net.sourceforge.cilib.container
Default wrapper class that implements a default array.
StandardArray() - Constructor for class net.sourceforge.cilib.container.StandardArray
 
StandardArray(int) - Constructor for class net.sourceforge.cilib.container.StandardArray
 
StandardChargedParticleInitialisationStrategy - Class in net.sourceforge.cilib.pso.dynamic
 
StandardChargedParticleInitialisationStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
StandardChargedParticleInitialisationStrategy(StandardChargedParticleInitialisationStrategy) - Constructor for class net.sourceforge.cilib.pso.dynamic.StandardChargedParticleInitialisationStrategy
 
StandardContributionUpdateStrategy - Class in net.sourceforge.cilib.cooperative.contributionupdatestrategies
TODO: Complete this javadoc.
StandardContributionUpdateStrategy() - Constructor for class net.sourceforge.cilib.cooperative.contributionupdatestrategies.StandardContributionUpdateStrategy
 
StandardFitnessSharingStrategy - Class in net.sourceforge.cilib.coevolution
example of implementation of an FitnessSharingStrategy.
StandardFitnessSharingStrategy() - Constructor for class net.sourceforge.cilib.coevolution.StandardFitnessSharingStrategy
 
StandardFitnessSharingStrategy(StandardFitnessSharingStrategy) - Constructor for class net.sourceforge.cilib.coevolution.StandardFitnessSharingStrategy
 
StandardFitnessUpdateStrategy - Class in net.sourceforge.cilib.cooperative.fitnessupdatestrategies
TODO: Complete this javadoc.
StandardFitnessUpdateStrategy() - Constructor for class net.sourceforge.cilib.cooperative.fitnessupdatestrategies.StandardFitnessUpdateStrategy
 
StandardGraph<E extends Comparable<E>> - Class in net.sourceforge.cilib.type.types.container
TODO: Complete this javadoc.
StandardGraph() - Constructor for class net.sourceforge.cilib.type.types.container.StandardGraph
 
StandardGraph(StandardGraph<E>) - Constructor for class net.sourceforge.cilib.type.types.container.StandardGraph
 
StandardGuideUpdateStrategy - Class in net.sourceforge.cilib.pso.moo.guideupdatestrategies
This the standard GuideUpdateStrategy in that it always updates the given particle's guide.
StandardGuideUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideupdatestrategies.StandardGuideUpdateStrategy
 
StandardGuideUpdateStrategy(StandardGuideUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.moo.guideupdatestrategies.StandardGuideUpdateStrategy
 
StandardLayerIterator - Class in net.sourceforge.cilib.neuralnetwork.generic
 
StandardLayerIterator(ArrayList<NeuronConfig>) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
StandardParticle - Class in net.sourceforge.cilib.pso.particle
 
StandardParticle() - Constructor for class net.sourceforge.cilib.pso.particle.StandardParticle
Creates a new instance of StandardParticle.
StandardParticle(StandardParticle) - Constructor for class net.sourceforge.cilib.pso.particle.StandardParticle
Create a copy of the provided instance.
StandardPattern - Class in net.sourceforge.cilib.neuralnetwork.generic.datacontainers
 
StandardPattern() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
StandardPattern(Vector, Vector) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
StandardPersonalBestUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
Update the personal best of the particle, based on the standard PSO definition of the process.
StandardPersonalBestUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPersonalBestUpdateStrategy
 
StandardPositionUpdateStrategy - Class in net.sourceforge.cilib.pso.positionupdatestrategies
This is the normal position update as described by Kennedy and Eberhart.
StandardPositionUpdateStrategy() - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPositionUpdateStrategy
Create an new instance of StandardPositionUpdateStrategy.
StandardPositionUpdateStrategy(StandardPositionUpdateStrategy) - Constructor for class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPositionUpdateStrategy
Copy constructor.
StandardSwarmCreationStrategy - Class in net.sourceforge.cilib.pso.niching
 
StandardSwarmCreationStrategy() - Constructor for class net.sourceforge.cilib.pso.niching.StandardSwarmCreationStrategy
 
StandardVelocityUpdate - Class in net.sourceforge.cilib.pso.velocityupdatestrategies
Implementation of the standard / default velocity update equation.
StandardVelocityUpdate() - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Creates a new instance of StandardVelocityUpdate.
StandardVelocityUpdate(StandardVelocityUpdate) - Constructor for class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Copy constructor.
state - Variable in class net.sourceforge.cilib.games.states.GridGameState
 
StateAwareMeasurement - Class in net.sourceforge.cilib.measurement
This class serves as the base class for all state based measurements.
StateAwareMeasurement() - Constructor for class net.sourceforge.cilib.measurement.StateAwareMeasurement
 
StateEvaluationAgent - Class in net.sourceforge.cilib.games.agent.state
 
StateEvaluationAgent() - Constructor for class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
 
StateEvaluationAgent(StateEvaluationAgent) - Constructor for class net.sourceforge.cilib.games.agent.state.StateEvaluationAgent
Copy constructor
StateEvaluator - Interface in net.sourceforge.cilib.games.agent.state.evaluation
 
StateGame - Interface in net.sourceforge.cilib.games.game
 
stateInputStrategy - Variable in class net.sourceforge.cilib.games.agent.NeuralAgent
 
StateTraversalStrategy - Class in net.sourceforge.cilib.games.agent.state.traversal
 
StateTraversalStrategy() - Constructor for class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
StateTraversalStrategy(StateTraversalStrategy) - Constructor for class net.sourceforge.cilib.games.agent.state.traversal.StateTraversalStrategy
 
staticFlag - Static variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
Whether parser is static.
StaticPhenotypeUpdateStrategy - Class in net.sourceforge.cilib.ec
 
StaticPhenotypeUpdateStrategy() - Constructor for class net.sourceforge.cilib.ec.StaticPhenotypeUpdateStrategy
 
StaticPositionInitializationStrategy - Class in net.sourceforge.cilib.games.game.predatorprey.init
 
StaticPositionInitializationStrategy() - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
 
StaticPositionInitializationStrategy(StaticPositionInitializationStrategy) - Constructor for class net.sourceforge.cilib.games.game.predatorprey.init.StaticPositionInitializationStrategy
Copy constructor
Stats - Class in net.sourceforge.cilib.math
Some simple methods for determining some statistics.
stdDeviation(Vector) - Static method in class net.sourceforge.cilib.math.Stats
 
StemConflictTable - Class in net.sourceforge.cilib.bioinf.rnaprediction
TODO: Compelte this javadoc.
StemConstraintChecker - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
StemConstraintChecker() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.StemConstraintChecker
 
StemGenerator - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
StemGenerator.PivotString - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
StemGenerator.PivotString(String, boolean) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
Step - Class in net.sourceforge.cilib.functions.continuous
TODO: Complete this javadoc.
Step() - Constructor for class net.sourceforge.cilib.functions.continuous.Step
Create an instance of the Step function.
StochasticTrainingGeneralisationEpochStrategy - Class in net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy
 
StochasticTrainingGeneralisationEpochStrategy() - Constructor for class net.sourceforge.cilib.neuralnetwork.foundation.epochstrategy.StochasticTrainingGeneralisationEpochStrategy
 
StoppingCondition - Interface in net.sourceforge.cilib.stoppingcondition
A class that implements this interface can be used to measure the progress of an algorithm.
StoppingConditionFactory - Interface in net.sourceforge.cilib.stoppingcondition
 
StoredFitness - Class in net.sourceforge.cilib.measurement.single
This measurement only works for PSO.
StoredFitness() - Constructor for class net.sourceforge.cilib.measurement.single.StoredFitness
 
StoredFitness(StoredFitness) - Constructor for class net.sourceforge.cilib.measurement.single.StoredFitness
 
StringBasedDomainRegistry - Class in net.sourceforge.cilib.type
Class to perform the needed mappings between a top level domain string and the built representation.
StringBasedDomainRegistry() - Constructor for class net.sourceforge.cilib.type.StringBasedDomainRegistry
Construct an instance of the DomainRegistry that will contain the needed information about the domain.
StringBasedDomainRegistry(StringBasedDomainRegistry) - Constructor for class net.sourceforge.cilib.type.StringBasedDomainRegistry
Copy Constructor.
StringDataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
 
StringDataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
StringDataSetBuilder(StringDataSetBuilder) - Constructor for class net.sourceforge.cilib.problem.dataset.StringDataSetBuilder
 
StringType - Class in net.sourceforge.cilib.type.types
 
StringType() - Constructor for class net.sourceforge.cilib.type.types.StringType
Create an StringType instance, which is empty and uninitialised.
StringType(String) - Constructor for class net.sourceforge.cilib.type.types.StringType
Create an instance with the given string as the contents.
StringType(StringType) - Constructor for class net.sourceforge.cilib.type.types.StringType
Copy constructor.
StructuredType<E> - Interface in net.sourceforge.cilib.type.types.container
Description for all objects that maintain a structure or collection of objects.
StructuredTypeFitnessCalculator<T extends StructuredType<?>> - Class in net.sourceforge.cilib.util.calculator
A fitness calculator that determines the fitness value of a StructuredType.
StructuredTypeFitnessCalculator() - Constructor for class net.sourceforge.cilib.util.calculator.StructuredTypeFitnessCalculator
 
subList(int, int) - Method in class net.sourceforge.cilib.container.SortedList
subList(int, int) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
subList(int, int) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
subList(int, int) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
subList(int, int) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
subList(int, int) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
subList(int, int) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Create a sub vector from the current Vector.
subList(int, int) - Method in class net.sourceforge.cilib.type.types.container.TypeList
Create a sub vector from the current Vector.
subList(int, int) - Method in class net.sourceforge.cilib.type.types.container.Vector
Obtain a sublist from fromIndex to toIndex.
subPopulationsAlgorithms - Variable in class net.sourceforge.cilib.algorithm.population.MultiPopulationBasedAlgorithm
 
subtract(Vector) - Method in interface net.sourceforge.cilib.math.VectorMath
Subtract the provided Vector from the current Vector.
subtract(Vector) - Method in class net.sourceforge.cilib.type.types.container.Vector
Subtract the provided Vector from the current Vector.
SwitchTo(int) - Method in class net.sourceforge.cilib.type.parser.DomainParserTokenManager
Switch to specified lex state.
SynchronizedOutputBuffer - Class in net.sourceforge.cilib.simulator
 
SynchronizedOutputBuffer(String, int, int) - Constructor for class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
Creates a new instance of SynchronizedOutputBuffer.
SynchronousIterationStrategy - Class in net.sourceforge.cilib.pso.iterationstrategies
Implementation of the synchronous iteration strategy for PSO.
SynchronousIterationStrategy() - Constructor for class net.sourceforge.cilib.pso.iterationstrategies.SynchronousIterationStrategy
 

T

T - Class in net.sourceforge.cilib.type.creator
 
T() - Constructor for class net.sourceforge.cilib.type.creator.T
 
tabSize - Variable in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
TanHOutputFunction - Class in net.sourceforge.cilib.neuralnetwork.generic.neuron
Hyperbollic Tangent Function.
TanHOutputFunction() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.neuron.TanHOutputFunction
 
target - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
targetSelectionStrategy - Variable in class net.sourceforge.cilib.boa.bee.AbstractBee
 
Tausworthe - Class in net.sourceforge.cilib.math.random.generator
This is a maximally equidistributed combined Tausworthe generator by L'Ecuyer.
Tausworthe() - Constructor for class net.sourceforge.cilib.math.random.generator.Tausworthe
 
Tausworthe(long) - Constructor for class net.sourceforge.cilib.math.random.generator.Tausworthe
 
terminate() - Method in class net.sourceforge.cilib.algorithm.Algorithm
Terminates the algorithm.
terminate() - Method in class net.sourceforge.cilib.simulator.Simulation
Terminates all the experiments.
tester - Class in net.sourceforge.cilib.neuralnetwork.testarea
TODO: Complete this javadoc.
TestErrorINCLearnWithTrainer - Class in net.sourceforge.cilib.neuralnetwork.testarea
 
TestFFNNandGDTrainer - Class in net.sourceforge.cilib.neuralnetwork.testarea
 
TestNeuronAndEvaluateFFNN - Class in net.sourceforge.cilib.neuralnetwork.testarea
 
TestPostMeasure - Class in net.sourceforge.cilib.neuralnetwork.testarea
TODO: Complete this javadoc.
TestPostMeasure() - Constructor for class net.sourceforge.cilib.neuralnetwork.testarea.TestPostMeasure
 
TestSAILAwithTrainer - Class in net.sourceforge.cilib.neuralnetwork.testarea
 
TestStemGenerator - Class in net.sourceforge.cilib.bioinf.rnaprediction
TODO: Complete this javadoc and potentially remove this object.
Tetris - Class in net.sourceforge.cilib.games.game.tetris
This is an implimentation of the game of Tetris.
Tetris() - Constructor for class net.sourceforge.cilib.games.game.tetris.Tetris
 
Tetris(Tetris) - Constructor for class net.sourceforge.cilib.games.game.tetris.Tetris
Tetris(Tetris, TetrisGameState) - Constructor for class net.sourceforge.cilib.games.game.tetris.Tetris
TetrisBlock - Class in net.sourceforge.cilib.games.game.tetris
 
TetrisBlock(Enum<? extends GameEnum>, ItemLocation) - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
TetrisBlock(TetrisBlock) - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
TetrisFeaturesInputStrategy - Class in net.sourceforge.cilib.games.game.tetris
This is a NeuralStateInputStrategy that gives certain specified features of a tetris game state as input to the Neural Network.
TetrisFeaturesInputStrategy() - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisFeaturesInputStrategy
 
TetrisGameState - Class in net.sourceforge.cilib.games.game.tetris
This class represents a Tetris game state.
TetrisGameState() - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
TetrisGameState(TetrisGameState) - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisGameState
 
TetrisScoringStrategy - Class in net.sourceforge.cilib.games.game.tetris
 
TetrisScoringStrategy() - Constructor for class net.sourceforge.cilib.games.game.tetris.TetrisScoringStrategy
 
TextDataSetBuilder - Class in net.sourceforge.cilib.problem.dataset
TODO: Complete this javadoc.
TextDataSetBuilder() - Constructor for class net.sourceforge.cilib.problem.dataset.TextDataSetBuilder
 
TicTacToe - Class in net.sourceforge.cilib.games.game.tictactoe
This is an implimentation of the game of Tic Tac Toe
TicTacToe() - Constructor for class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
 
TicTacToe(TicTacToe) - Constructor for class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Copy constructor
TicTacToe(TicTacToe, GridGameState) - Constructor for class net.sourceforge.cilib.games.game.tictactoe.TicTacToe
Time - Class in net.sourceforge.cilib.measurement.generic
 
Time() - Constructor for class net.sourceforge.cilib.measurement.generic.Time
Create a default instance of Time.
Time(Time) - Constructor for class net.sourceforge.cilib.measurement.generic.Time
Copy constructor.
toArray() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
toArray(T[]) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
toArray() - Method in class net.sourceforge.cilib.container.SortedList
Return a new array containg the elements of this list.
toArray(T[]) - Method in class net.sourceforge.cilib.container.SortedList
toArray() - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
toArray(T[]) - Method in class net.sourceforge.cilib.entity.topologies.GBestTopology
 
toArray() - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
toArray(T[]) - Method in class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
toArray() - Method in interface net.sourceforge.cilib.entity.Topology
toArray(T[]) - Method in interface net.sourceforge.cilib.entity.Topology
toArray() - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
toArray(T[]) - Method in class net.sourceforge.cilib.moo.archive.constrained.SetBasedConstrainedArchive
 
toArray() - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
toArray(T[]) - Method in class net.sourceforge.cilib.moo.archive.unconstrained.QuadTree
 
toArray() - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
toArray(T[]) - Method in class net.sourceforge.cilib.problem.MOOptimisationProblem
 
toArray() - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Create an Object [] from this Vector.
toArray() - Method in class net.sourceforge.cilib.type.types.container.Set
 
toArray(T[]) - Method in class net.sourceforge.cilib.type.types.container.Set
 
toArray() - Method in class net.sourceforge.cilib.type.types.container.TypeList
Create an Object [] from this Vector.
toArray() - Method in class net.sourceforge.cilib.type.types.container.Vector
Obtain an array representing this Vector.
token - Variable in class net.sourceforge.cilib.type.parser.DomainParser
Current token.
Token - Class in net.sourceforge.cilib.type.parser
Describes the input token stream.
Token() - Constructor for class net.sourceforge.cilib.type.parser.Token
No-argument constructor
Token(int) - Constructor for class net.sourceforge.cilib.type.parser.Token
Constructs a new token for the specified Image.
Token(int, String) - Constructor for class net.sourceforge.cilib.type.parser.Token
Constructs a new token for the specified Image and Kind.
token_source - Variable in class net.sourceforge.cilib.type.parser.DomainParser
Generated Token Manager.
tokenImage - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
Literal token values.
tokenImage - Variable in exception net.sourceforge.cilib.type.parser.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
TokenMgrError - Error in net.sourceforge.cilib.type.parser
Token Manager Error.
TokenMgrError() - Constructor for error net.sourceforge.cilib.type.parser.TokenMgrError
No arg constructor.
TokenMgrError(String, int) - Constructor for error net.sourceforge.cilib.type.parser.TokenMgrError
Constructor with message and reason.
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error net.sourceforge.cilib.type.parser.TokenMgrError
Full Constructor.
Topologies - Class in net.sourceforge.cilib.entity
Topology related utilities.
Topology<E extends Entity> - Interface in net.sourceforge.cilib.entity
This is a generalization for all algorithms that maintain a collection of Entity objects.
topology - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
topology - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.DynamicPatternSelectionData
 
topology - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.SAILARealData
 
TopologyBasedNormalisation - Class in net.sourceforge.cilib.measurement.single.diversity.normalisation
Normalisation based on the Topology.
TopologyBasedNormalisation() - Constructor for class net.sourceforge.cilib.measurement.single.diversity.normalisation.TopologyBasedNormalisation
Create an instance of the TopologyBasedNormalisation.
TopologyBestSentryDetectionStrategy<E extends PopulationBasedAlgorithm> - Class in net.sourceforge.cilib.pso.dynamic.detectionstrategies
 
TopologyBestSentryDetectionStrategy() - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.TopologyBestSentryDetectionStrategy
 
TopologyBestSentryDetectionStrategy(EnvironmentChangeDetectionStrategy<E>) - Constructor for class net.sourceforge.cilib.pso.dynamic.detectionstrategies.TopologyBestSentryDetectionStrategy
 
TopologyHolder - Interface in net.sourceforge.cilib.entity.topologies
 
TopologyLoopingOperator - Class in net.sourceforge.cilib.entity.operators.general
TODO: Complete this javadoc.
TopologyLoopingOperator() - Constructor for class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
 
TopologyLoopingOperator(TopologyLoopingOperator) - Constructor for class net.sourceforge.cilib.entity.operators.general.TopologyLoopingOperator
 
TopologyVisitor - Class in net.sourceforge.cilib.entity.visitor
Base class for all visitor instances that visit an entire Topology at once.
TopologyVisitor() - Constructor for class net.sourceforge.cilib.entity.visitor.TopologyVisitor
 
toString() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair
toString() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAStem
 
toString() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString
 
toString() - Method in class net.sourceforge.cilib.container.Pair
toString() - Method in class net.sourceforge.cilib.ec.Individual
Create a textual representation of the current Individual.
toString() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.StandardPattern
 
toString() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.ClassificationErrorReal
 
toString() - Method in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
toString() - Method in class net.sourceforge.cilib.problem.dataset.ClusterableDataSet.Pattern
 
toString() - Method in class net.sourceforge.cilib.problem.MinimisationFitness
Get the textual representation of this Fitness object.
toString() - Method in class net.sourceforge.cilib.problem.MOFitness
 
toString() - Method in class net.sourceforge.cilib.type.parser.DomainParser.DomainNode
 
toString() - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
toString(String) - Method in class net.sourceforge.cilib.type.parser.SimpleNode
 
toString() - Method in class net.sourceforge.cilib.type.parser.Token
Returns the image.
toString() - Method in class net.sourceforge.cilib.type.types.Bit
Return the String representation of this object's value.
toString() - Method in class net.sourceforge.cilib.type.types.Blackboard
toString(char, char, char) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Generate a String representation of this Vector using the provided first, last and delimiter characters.
toString() - Method in class net.sourceforge.cilib.type.types.container.AbstractList
toString(char) - Method in class net.sourceforge.cilib.type.types.container.AbstractList
Get the String representation, using the provided delimiter.
toString() - Method in class net.sourceforge.cilib.type.types.container.BinaryTree
toString() - Method in class net.sourceforge.cilib.type.types.container.GeneralTree
toString() - Method in class net.sourceforge.cilib.type.types.container.NaryTree
toString() - Method in class net.sourceforge.cilib.type.types.container.Set
Not supported for this container.
toString() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
toString() - Method in class net.sourceforge.cilib.type.types.Int
toString() - Method in class net.sourceforge.cilib.type.types.Long
toString() - Method in class net.sourceforge.cilib.type.types.Real
Return a String representation of the Real object.
toString() - Method in class net.sourceforge.cilib.type.types.StringType
toString() - Method in class net.sourceforge.cilib.util.selection.Selection.Entry
Obtain the String of the decorated element.
totalEvaluations - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
TotalFitnessCalculationStrategy - Class in net.sourceforge.cilib.coevolution.score.fitnesscalculation
the fitness is the total Fitness over all the fitness values attained in each round
TotalFitnessCalculationStrategy() - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.TotalFitnessCalculationStrategy
 
TotalFitnessCalculationStrategy(FitnessCalculationStrategy) - Constructor for class net.sourceforge.cilib.coevolution.score.fitnesscalculation.TotalFitnessCalculationStrategy
 
TournamentSelection<E extends Comparable> - Class in net.sourceforge.cilib.util.selection.recipes
A recipe for Tournament selection.
TournamentSelection() - Constructor for class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Create a new instance.
TournamentSelection(TournamentSelection) - Constructor for class net.sourceforge.cilib.util.selection.recipes.TournamentSelection
Create a copy of the provided instance.
TournamentSelectionStrategy - Class in net.sourceforge.cilib.entity.operators.selection
Perform a tournament selection process on the provided Topology with a predefined tournament size.
TournamentSelectionStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Create a new instance of TournamentSelectionStrategy.
TournamentSelectionStrategy(TournamentSelectionStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.selection.TournamentSelectionStrategy
Copy constructor.
train() - Method in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
TrainAndTestNN - Class in net.sourceforge.cilib.neuralnetwork.basicFFNN
 
trainer - Variable in class net.sourceforge.cilib.neuralnetwork.foundation.EvaluationMediator
 
trainingSet - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
TrainingStrategy - Interface in net.sourceforge.cilib.neuralnetwork.foundation
 
transferKnowledge(List<PopulationBasedAlgorithm>) - Method in interface net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.KnowledgeTransferStrategy
Returns knowledge that was gained from an entity within the list of populations.
transferKnowledge(List<PopulationBasedAlgorithm>) - Method in class net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies.SelectiveKnowledgeTransferStrategy
 
Tree<E extends Cloneable> - Interface in net.sourceforge.cilib.type.types.container
Definition of the Tree type.
TShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the T shape
TShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.TShape
 
TShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.TShape
 
TTTStateInputStrategy - Class in net.sourceforge.cilib.games.game.tictactoe
This class is used to give a Neural Network a Tic Tac Toe game.
TTTStateInputStrategy() - Constructor for class net.sourceforge.cilib.games.game.tictactoe.TTTStateInputStrategy
 
TuriIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Turi Validity Index as given in Section 3.1.4 on page 66 of Mahamed G.
TuriIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.TuriIndex
 
type() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
TYPE - Static variable in interface net.sourceforge.cilib.type.parser.DomainParserConstants
RegularExpression Id.
Type - Interface in net.sourceforge.cilib.type.types
Type interface for all type-objects that are used within CIlib.
TypeCreator - Interface in net.sourceforge.cilib.type.creator
Interface defining the manner in which Type object is to be created in a standard fashion.
TypeList - Class in net.sourceforge.cilib.type.types.container
General list container for all Type instances.
TypeList() - Constructor for class net.sourceforge.cilib.type.types.container.TypeList
Create a new instance.
TypeList(int) - Constructor for class net.sourceforge.cilib.type.types.container.TypeList
Create a new instance with the predefined size.
TypeList(TypeList) - Constructor for class net.sourceforge.cilib.type.types.container.TypeList
Create a copy of the provided instance.
Types - Class in net.sourceforge.cilib.type.types
 

U

UnconstrainedBoundary - Class in net.sourceforge.cilib.problem.boundaryconstraint
This is the default boundary constraint, whereby no boundary checking is performed.
UnconstrainedBoundary() - Constructor for class net.sourceforge.cilib.problem.boundaryconstraint.UnconstrainedBoundary
 
UniformCrossoverStrategy - Class in net.sourceforge.cilib.entity.operators.crossover
 
UniformCrossoverStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.crossover.UniformCrossoverStrategy
 
UniformCrossoverStrategy(UniformCrossoverStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.crossover.UniformCrossoverStrategy
 
UniformMutationStrategy - Class in net.sourceforge.cilib.entity.operators.mutation
 
UniformMutationStrategy() - Constructor for class net.sourceforge.cilib.entity.operators.mutation.UniformMutationStrategy
 
UniformMutationStrategy(UniformMutationStrategy) - Constructor for class net.sourceforge.cilib.entity.operators.mutation.UniformMutationStrategy
 
uninitialise(Vector) - Method in class net.sourceforge.cilib.problem.dataset.DataSetBuilder
 
UniqueSeedingStrategy - Class in net.sourceforge.cilib.games.random
This is a seeding strategy that generates a unique seed everytime the seedGenerator method is called.
UniqueSeedingStrategy() - Constructor for class net.sourceforge.cilib.games.random.UniqueSeedingStrategy
 
UniqueSeedingStrategy(GameSeedingStrategy) - Constructor for class net.sourceforge.cilib.games.random.UniqueSeedingStrategy
 
update() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Update the paramter.
update() - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyDecreasingControlParameter
Update the paramter.
update() - Method in class net.sourceforge.cilib.controlparameter.ExponentiallyIncreasingControlParameter
Update the paramter.
update() - Method in class net.sourceforge.cilib.controlparameter.LinearDecreasingControlParameter
Update the paramter.
update() - Method in class net.sourceforge.cilib.controlparameter.LinearIncreasingControlParameter
Update the parameter linearly based on the current percentage complete of the running algorithm.
update(Entity, int, int, int) - Method in class net.sourceforge.cilib.cooperative.CooperativeEntity
 
update() - Method in class net.sourceforge.cilib.entity.AbstractTopology
Perform any required updates to the Topology instance.
update() - Method in interface net.sourceforge.cilib.entity.Topology
Perform any required updates to the Topology instance.
update(double, GridGameState) - Method in class net.sourceforge.cilib.games.game.tetris.shape.AbstractShape
attempt to move each block in shape down if collides before successfull move dont change pos and return false if moves but lands on bottom or above other block return false else return true
Update() - Method in class net.sourceforge.cilib.games.game.tetris.Tetris
This method should update any game elements outside the control of the players
update(double, GridGameState) - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
Update() - Method in interface net.sourceforge.cilib.games.game.UpdateGame
This method should update any game elements outside the control of the players
updateArchive(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.moo.iterationstrategies.ArchivingIterationStrategy
 
updateContext(CooperativeEntity) - Method in class net.sourceforge.cilib.problem.CooperativeOptimisationProblemAdapter
 
updateContribution(Entity, int, CooperativeEntity, int, int) - Method in interface net.sourceforge.cilib.cooperative.contributionupdatestrategies.ContributionUpdateStrategy
 
updateContribution(Entity, int, CooperativeEntity, int, int) - Method in class net.sourceforge.cilib.cooperative.contributionupdatestrategies.SelectiveContributionUpdateStrategy
 
updateContribution(Entity, int, CooperativeEntity, int, int) - Method in class net.sourceforge.cilib.cooperative.contributionupdatestrategies.StandardContributionUpdateStrategy
 
updateContributionFitness(Fitness) - Method in class net.sourceforge.cilib.algorithm.MultistartOptimisationAlgorithm
Updates the new fitness for the solution contribution.
updateContributionFitness(Fitness) - Method in class net.sourceforge.cilib.cooperative.HybridCooperativeAlgorithm
Updates the new fitness for the solution contribution.
updateContributionFitness(Fitness) - Method in interface net.sourceforge.cilib.cooperative.ParticipatingAlgorithm
Updates the new fitness for the solution contribution.
updateContributionFitness(Fitness) - Method in class net.sourceforge.cilib.cooperative.SplitCooperativeAlgorithm
The purpose of this method should not be confused with the ContributionUpdateStrategy.
updateContributionFitness(Fitness) - Method in class net.sourceforge.cilib.ec.EC
Updates the new fitness for the solution contribution.
updateContributionFitness(Fitness) - Method in class net.sourceforge.cilib.pso.PSO
Updates the new fitness for the solution contribution.
updateControlParameters() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Update all the ControlParameters that are maintained within the Particle.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
updateControlParameters(Individual) - Method in class net.sourceforge.cilib.ec.LognormalPhenotypeUpdateStrategy
 
updateControlParameters(Individual) - Method in interface net.sourceforge.cilib.ec.PhenotypeUpdateStrategy
 
updateControlParameters(Individual) - Method in class net.sourceforge.cilib.ec.StaticPhenotypeUpdateStrategy
 
updateControlParameters() - Method in interface net.sourceforge.cilib.entity.Particle
Update all the ControlParameters that are maintained within the Particle.
updateControlParameters() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
 
updateControlParameters() - Method in class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
updateControlParameters() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.VeenmanReindersBackerIndex
 
updateControlParameters() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Update all the ControlParameters that are maintained within the Particle.
updateControlParameters() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
updateControlParameters() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Update all the ControlParameters that are maintained within the Particle.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Update the needed control parameters for the VelocityUpdate, if needed.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesExploitVelocityUpdateStrategy
 
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Update the needed control parameters for the VelocityUpdate, if needed.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
Update the associated ControlParameters for the VelocityUpdateStrategy.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Update the associated ControlParameters for the VelocityUpdateStrategy.
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
updateControlParameters(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Update the associated ControlParameters for the VelocityUpdateStrategy.
updateControlParameters(Particle) - Method in interface net.sourceforge.cilib.pso.velocityupdatestrategies.VelocityUpdateStrategy
Update the needed control parameters for the VelocityUpdate, if needed.
updateFanInWeights(NeuronConfig, Type) - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
updateFitness(OptimisationProblem, Entity) - Method in interface net.sourceforge.cilib.cooperative.fitnessupdatestrategies.FitnessUpdateStrategy
Update the fitness of the provided Entity, based on the current OptimisationProblem.
updateFitness(OptimisationProblem, Entity) - Method in class net.sourceforge.cilib.cooperative.fitnessupdatestrategies.StandardFitnessUpdateStrategy
Update the fitness of the provided Entity, based on the current OptimisationProblem.
UpdateGame - Interface in net.sourceforge.cilib.games.game
 
updateGuide(Particle, EntityType.Particle.Guide, Vector) - Method in class net.sourceforge.cilib.pso.moo.guideupdatestrategies.DominantGuideUpdateStrategy
 
updateGuide(Particle, EntityType.Particle.Guide, Vector) - Method in interface net.sourceforge.cilib.pso.moo.guideupdatestrategies.GuideUpdateStrategy
Determines if particle's guide (either local or global depending on guideType) should be updated, and updates it with newGuide.
updateGuide(Particle, EntityType.Particle.Guide, Vector) - Method in class net.sourceforge.cilib.pso.moo.guideupdatestrategies.StandardGuideUpdateStrategy
 
updateIndex() - Method in class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
Update the index that is used to get a seed from the list.
updateIndex() - Method in class net.sourceforge.cilib.games.random.ListSeedingStrategy
Change the index that is used in the list of seeds.
UpdateLineColumn(char) - Method in class net.sourceforge.cilib.type.parser.SimpleCharStream
 
updateMovesDown() - Method in class net.sourceforge.cilib.games.game.tetris.TetrisBlock
 
updateNeighbourhoodBestEntities(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.pso.dynamic.responsestrategies.EnvironmentChangeResponseStrategy
TODO: The problem with this is that it is PSO specific.
updateParameter() - Method in class net.sourceforge.cilib.controlparameter.BoundedControlParameter
Update the required and needed parameters contained within this parameter.
updateParameter() - Method in class net.sourceforge.cilib.controlparameter.ConstantControlParameter
Update the required and needed parameters contained within this parameter.
updateParameter() - Method in interface net.sourceforge.cilib.controlparameter.ControlParameter
Update the required and needed parameters contained within this parameter.
updateParameter() - Method in class net.sourceforge.cilib.controlparameter.ProportionalControlParameter
Update the required and needed parameters contained within this parameter.
updateParameter() - Method in class net.sourceforge.cilib.controlparameter.RandomizingControlParameter
Update the contained ControlParameterUpdateStrategy.
updatePersonalBest(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BoundedPersonalBestUpdateStrategy
Update personal best if and only if the particle is within the bounds of the search space / problem.
updatePersonalBest(Particle) - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.PersonalBestUpdateStrategy
Update the personal best of the provided Particle.
updatePersonalBest(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPersonalBestUpdateStrategy
If the current fitness is better than the current best fitness, update the best fitness of the particle to equal the current fitness and make the personal best position a clone of the current particle position.
updatePopulationID(int, int, int) - Method in class net.sourceforge.cilib.coevolution.competitors.CoevolutionCompetitorList
Change the populationID for a PopulationCompetitorList, if the new population already exists, update the population ID's of the Competitor's and merge them with the existing PopulationCompetitorList,
updatePosition() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Update the position of the Particle.
updatePosition() - Method in class net.sourceforge.cilib.boa.bee.AbstractBee
Updates the position of the bee based on the neighboring nectar content.
updatePosition() - Method in interface net.sourceforge.cilib.boa.bee.HoneyBee
Updates the position of the bee based on the neighboring nectar content.
updatePosition() - Method in class net.sourceforge.cilib.boa.bee.OnlookerBee
Updates the position of the bee based on the neighboring nectar content.
updatePosition() - Method in class net.sourceforge.cilib.boa.bee.WorkerBee
Updates the position of the bee based on the neighboring nectar content.
updatePosition(HoneyBee, HoneyBee) - Method in interface net.sourceforge.cilib.boa.positionupdatestrategies.BeePositionUpdateStrategy
 
updatePosition(HoneyBee, HoneyBee) - Method in class net.sourceforge.cilib.boa.positionupdatestrategies.VisualPositionUpdateStategy
updatePosition() - Method in interface net.sourceforge.cilib.entity.Particle
Update the current position of the Particle.
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.dynamic.QuantumPositionUpdateStrategy
Update particle position; do it in a standard way if the particle is neutral, and in a quantum way if the particle is charged.
updatePosition() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Update the position of the Particle.
updatePosition() - Method in class net.sourceforge.cilib.pso.particle.DeviationDecorator
Update the position of the Particle.
updatePosition() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
updatePosition() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Update the position of the Particle.
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BareBonesPositionUpdateStrategy
Deprecated. Update the position of the Particle.
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.BinaryPositionUpdateStrategy
BinaryPSO particle position update, as defined by Kennedy and Eberhart.
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.DEPositionUpdateStrategy
 
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.GaussianPositionUpdateStrategy
 
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.LinearPositionUpdateStrategy
Update the position of the Particle.
updatePosition(Particle) - Method in interface net.sourceforge.cilib.pso.positionupdatestrategies.PositionUpdateStrategy
Update the position of the Particle.
updatePosition(Particle) - Method in class net.sourceforge.cilib.pso.positionupdatestrategies.StandardPositionUpdateStrategy
Update the position of the Particle.
updateSeed() - Method in class net.sourceforge.cilib.games.random.FixedListSeedingStrategy
The seeds are never changed
updateSeed() - Method in class net.sourceforge.cilib.games.random.RandomListSeedingStrategy
Check if the seed list needs to be randomised.
updateVelocity() - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAParticle
Update the velocity of the Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.bioinf.rnaprediction.RNAVelocityUpdate
 
updateVelocity() - Method in interface net.sourceforge.cilib.entity.Particle
Update the velocity of the Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.dynamic.ChargedVelocityUpdateStrategy
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.dynamic.QuantumVelocityUpdateStrategy
Update particle velocity; do it in a standard way if the particle is neutral, and do not update it if the particle is quantum (charged), since quantum particles do not use the velocity to update their positions.
updateVelocity() - Method in class net.sourceforge.cilib.pso.particle.AbstractParticle
Update the velocity of the Particle.
updateVelocity(VelocityUpdateStrategy) - Method in class net.sourceforge.cilib.pso.particle.LFDecorator
 
updateVelocity() - Method in class net.sourceforge.cilib.pso.particle.ParticleDecorator
 
updateVelocity() - Method in class net.sourceforge.cilib.pso.particle.StandardParticle
Update the velocity of the Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesDEVelocityUpdate
Perform the velocity update operation on the specified Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesExploitVelocityUpdateStrategy
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.BareBonesVelocityUpdateStrategy
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.CoherenceVelocityUpdate
Perform the velocity update for the given Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.ConstrictionVelocityUpdate
Perform the velocity update operation on the specified Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FDRVelocityUpdateStrategy
Perform the velocity update for the given Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.FIPSVelocityUpdate
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.GCVelocityUpdateStrategy
Perform the velocity update for the given Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LFVelocityUpdate
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.LinearVelocityUpdate
Perform the velocity update for the given Particle.
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.MOVelocityUpdateStrategy
 
updateVelocity(Particle) - Method in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
Perform the velocity update for the given Particle.
updateVelocity(Particle) - Method in interface net.sourceforge.cilib.pso.velocityupdatestrategies.VelocityUpdateStrategy
Perform the velocity update operation on the specified Particle.
upperBoundVector(Vector) - Static method in class net.sourceforge.cilib.util.Vectors
Constructs a Vector from vector Vector with each component's value set to the upper bound of that component.
upperDim() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
UrsemF1 - Class in net.sourceforge.cilib.functions.continuous
UrsemF1 function.
UrsemF1() - Constructor for class net.sourceforge.cilib.functions.continuous.UrsemF1
 
UrsemF3 - Class in net.sourceforge.cilib.functions.continuous
UrsemF3 function.
UrsemF3() - Constructor for class net.sourceforge.cilib.functions.continuous.UrsemF3
 
UrsemF4 - Class in net.sourceforge.cilib.functions.continuous
UrsemF4 function.
UrsemF4() - Constructor for class net.sourceforge.cilib.functions.continuous.UrsemF4
 
useBasisFunction - Variable in class net.sourceforge.cilib.functions.continuous.dynamic.MovingPeaks
 

V

validate() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.Observer
 
validate() - Method in class net.sourceforge.cilib.neuralnetwork.generic.trainingstrategies.FFNN_GD_TrainingStrategy
 
validateFitness(double) - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
This method logs the cases when the fitness is less than zero.
validationSet - Variable in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.GenericData
 
value() - Method in interface net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkDataIterator
 
value() - Method in class net.sourceforge.cilib.neuralnetwork.generic.datacontainers.LinearDataIterator
value - Variable in class net.sourceforge.cilib.neuralnetwork.generic.errorfunctions.MSEErrorFunction
 
value() - Method in interface net.sourceforge.cilib.neuralnetwork.generic.LayerIterator
 
value() - Method in class net.sourceforge.cilib.neuralnetwork.generic.StandardLayerIterator
 
value() - Method in class net.sourceforge.cilib.type.parser.DomainParser
 
value - Variable in class net.sourceforge.cilib.type.parser.SimpleNode
 
valueOf(int, int) - Method in class net.sourceforge.cilib.container.BitArray
Get the value of the bits between the provided indexes, i and j.
valueOf(String) - Static method in enum net.sourceforge.cilib.entity.EntityType.Coevolution
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.entity.EntityType.Individual
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.entity.EntityType.Particle.Guide
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.entity.EntityType.Particle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.entity.EntityType
Returns the enum constant of this type with the specified name.
valueOf(String, int, int) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
Determine the numeric value of the given bitstring.
valueOf(String, int) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
valueOf(String) - Method in class net.sourceforge.cilib.functions.continuous.decorators.AngleModulation
 
valueOf(Vector, int, int) - Method in class net.sourceforge.cilib.functions.discrete.BinaryAdapter
 
valueOf(String) - Static method in enum net.sourceforge.cilib.games.items.GameToken.PredatorPrey
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.games.items.GameToken.Tetris
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.games.items.GameToken.TicTacToe
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.sourceforge.cilib.games.items.GameToken
Returns the enum constant of this type with the specified name.
values() - Static method in enum net.sourceforge.cilib.entity.EntityType.Coevolution
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.entity.EntityType.Individual
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.entity.EntityType.Particle.Guide
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.entity.EntityType.Particle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.entity.EntityType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.games.items.GameToken.PredatorPrey
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.games.items.GameToken.Tetris
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.games.items.GameToken.TicTacToe
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.sourceforge.cilib.games.items.GameToken
Returns an array containing the constants of this enum type, in the order they are declared.
variance(Vector) - Static method in class net.sourceforge.cilib.math.Stats
 
variance(Collection<ClusterableDataSet.Pattern>, Vector) - Static method in class net.sourceforge.cilib.math.Stats
Calculates the variance of the given set/cluster/collection of @{link Pattern}s.
Vector - Class in net.sourceforge.cilib.type.types.container
 
Vector() - Constructor for class net.sourceforge.cilib.type.types.container.Vector
Create a new empty Vector.
Vector(int) - Constructor for class net.sourceforge.cilib.type.types.container.Vector
Create a new empty Vector with size as the initial capacity.
Vector(int, Numeric) - Constructor for class net.sourceforge.cilib.type.types.container.Vector
Create a new Vector instance of the provided size, with cloned copies of numeric.
Vector(Vector) - Constructor for class net.sourceforge.cilib.type.types.container.Vector
Create a new Vector which is a copy of the provided instance.
VectorMath - Interface in net.sourceforge.cilib.math
Interface to define operations associated with Vector mathematics.
Vectors - Class in net.sourceforge.cilib.util
Utility methods for Vectors.
VeenmanReindersBackerIndex - Class in net.sourceforge.cilib.functions.clustering.validityindices
This is the Veenman-Reinders-Backer Validity Index.
VeenmanReindersBackerIndex() - Constructor for class net.sourceforge.cilib.functions.clustering.validityindices.VeenmanReindersBackerIndex
 
velocityInitialisationStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
VelocityInitialisationStrategy - Interface in net.sourceforge.cilib.pso.particle.initialisation
Interface defining the valid tasks available for velocity intialisation.
velocityUpdateStrategy - Variable in class net.sourceforge.cilib.pso.particle.AbstractParticle
 
VelocityUpdateStrategy - Interface in net.sourceforge.cilib.pso.velocityupdatestrategies
 
VEPSOGuideSelectionStrategy - Class in net.sourceforge.cilib.pso.moo.guideselectionstrategies
Vector-Evaluated Particle Swarm Optimisation Guide Selection Strategy
VEPSOGuideSelectionStrategy() - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
VEPSOGuideSelectionStrategy(VEPSOGuideSelectionStrategy) - Constructor for class net.sourceforge.cilib.pso.moo.guideselectionstrategies.VEPSOGuideSelectionStrategy
 
vertices() - Method in interface net.sourceforge.cilib.type.types.container.Graph
Determine the number of vertices contained within the current Graph structure.
vertices() - Method in class net.sourceforge.cilib.type.types.container.StandardGraph
Get the number of verticies contained within the structure.
ViennaRNAFitness - Class in net.sourceforge.cilib.bioinf.rnaprediction
 
ViennaRNAFitness() - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness
 
ViennaRNAFitness(ViennaRNAFitness) - Constructor for class net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness
 
visit(E) - Method in class net.sourceforge.cilib.container.visitor.InOrderVisitorDecorator
Visit the provided object.
visit(E) - Method in class net.sourceforge.cilib.container.visitor.PrePostVisitor
Visit the provided object.
visit(E) - Method in class net.sourceforge.cilib.container.visitor.Visitor
Visit the provided object.
visit(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.visitor.ClosestEntityVisitor
Perform the search for the closest entity.
visit(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.visitor.DiameterVisitor
 
visit(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.visitor.RadiusVisitor
Perfrom the visit operation on the provided Topology.
visit(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.visitor.SpatialRadiusVisitor
Perfrom the visit operation on the provided Topology.
visit(Topology<? extends Entity>) - Method in class net.sourceforge.cilib.entity.visitor.TopologyVisitor
Perfrom the visit operation on the provided Topology.
visit(Problem) - Method in class net.sourceforge.cilib.neuralnetwork.foundation.NeuralNetworkRetrievalVisitor
 
visit(Problem) - Method in class net.sourceforge.cilib.problem.ProblemVisitor
Visit the provided object.
visit(Particle) - Method in class net.sourceforge.cilib.pso.particle.ParticleVisitor
Visit the provided particle.
visit(SimpleNode, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTrootElement, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTelement, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTdomainElement, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTtype, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTexponent, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTdimension, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTlowerDim, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTupperDim, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTvalue, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTrepeat, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(ASTnumber, Object) - Method in interface net.sourceforge.cilib.type.parser.DomainParserVisitor
 
visit(SimpleNode, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Top level visit operation - no actions are performed.
visit(ASTrootElement, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
The root starting point of the grammar.
visit(ASTelement, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Obtain the results of the visitation of the domainElement and any possible repeats.
visit(ASTdomainElement, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Obtain the data from the domainElement.
visit(ASTtype, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Obtain the type defined in the portion of the domain string.
visit(ASTexponent, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Extract the exponent value for the portion of the domain string.
visit(ASTdimension, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Determine the dimension elements of the potion of the domain string.
visit(ASTlowerDim, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Extract the lower bounds information from the portion of the domain string.
visit(ASTupperDim, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Obtain the value for the upper bound and return it.
visit(ASTvalue, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Perfrom no actions.
visit(ASTrepeat, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Apply the repeat action as defined in the grammar.
visit(ASTnumber, Object) - Method in class net.sourceforge.cilib.type.parser.DomainParserVisitorImpl
Extract the number that is defined in the domain string.
visitNeuronConfig(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.FanInWeightInitialiser
 
visitNeuronConfig(NeuronConfig) - Method in interface net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.GenericTopologyVisitor
 
visitNeuronConfig(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.RandomWeightInitialiser
 
visitNeuronConfig(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.SpecificWeightInitialiser
 
visitNeuronConfig(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightCountingVisitor
 
visitNeuronConfig(NeuronConfig) - Method in class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightExtractingVisitor
 
Visitor<E> - Class in net.sourceforge.cilib.container.visitor
Abstract class defining the general structure of a Visitor.
Visitor() - Constructor for class net.sourceforge.cilib.container.visitor.Visitor
Create the Visitor instance.
VisualPositionUpdateStategy - Class in net.sourceforge.cilib.boa.positionupdatestrategies
Represents the visual exploration strategy used by bees to choose a their next forage patch close by.
VisualPositionUpdateStategy() - Constructor for class net.sourceforge.cilib.boa.positionupdatestrategies.VisualPositionUpdateStategy
 
vMax - Variable in class net.sourceforge.cilib.pso.velocityupdatestrategies.StandardVelocityUpdate
 
VonNeumannTopology<E extends Entity> - Class in net.sourceforge.cilib.entity.topologies
Implementation of the Von Neumann neighbourhood topology.
VonNeumannTopology() - Constructor for class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Creates a new instance of VonNeumannTopology.
VonNeumannTopology(VonNeumannTopology<E>) - Constructor for class net.sourceforge.cilib.entity.topologies.VonNeumannTopology
Copy constructor.

W

w1 - Variable in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Specifies the weight that influences how much the intra-cluster-distance will contribute to the final fitness.
w2 - Variable in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Specifies the weight that influences how much the inter-cluster-distance will contribute to the final fitness.
w3 - Variable in class net.sourceforge.cilib.functions.clustering.ParametricWithQuantisationErrorFunction
Specifies the weight that incluences how much the Quantisation Error will contribute to the final fitness.
weigh(List<Selection.Entry<OptimisationSolution>>) - Method in class net.sourceforge.cilib.moo.archive.solutionweighing.AntiClusterWeighing
 
weigh(List<Selection.Entry<OptimisationSolution>>) - Method in interface net.sourceforge.cilib.moo.archive.solutionweighing.SolutionWeighing
 
weigh(Weighing<E>) - Method in class net.sourceforge.cilib.util.selection.Selection
Apply the provided weighing on the current selection.
weigh(Weighing<E>) - Method in interface net.sourceforge.cilib.util.selection.SelectionSyntax
 
weigh(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.weighing.entity.EntityWeighing
Perform a weighing on the provided list of entries.
weigh(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.weighing.FixedWeighing
Perform a weighing on the provided list of entries.
weigh(List<Selection.Entry<E>>) - Method in class net.sourceforge.cilib.util.selection.weighing.LinearWeighing
Perform a weighing on the provided list of entries.
weigh(List<Selection.Entry<E>>) - Method in interface net.sourceforge.cilib.util.selection.weighing.Weighing
Perform a weighing on the provided list of entries.
Weighing<E> - Interface in net.sourceforge.cilib.util.selection.weighing
Interface defining how weighing for selections are to operate.
Weight - Class in net.sourceforge.cilib.neuralnetwork.generic
 
Weight() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
Weight(Type) - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.Weight
 
WeightCountingVisitor - Class in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
 
WeightCountingVisitor() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightCountingVisitor
 
WeightExtractingVisitor - Class in net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors
TODO: Complete this javadoc.
WeightExtractingVisitor() - Constructor for class net.sourceforge.cilib.neuralnetwork.generic.topologyvisitors.WeightExtractingVisitor
 
weights - Variable in class net.sourceforge.cilib.neuralnetwork.basicFFNN.FFNNTopology
 
win(Fitness) - Method in class net.sourceforge.cilib.coevolution.score.EntityScore
Indicate that the entity that is contained in this CoevolutionEntityScore won.
WinGameResult - Class in net.sourceforge.cilib.games.result
 
WinGameResult(int) - Constructor for class net.sourceforge.cilib.games.result.WinGameResult
 
WinGameResult(WinGameResult) - Constructor for class net.sourceforge.cilib.games.result.WinGameResult
 
WinLoseDrawValueScoringStrategy - Class in net.sourceforge.cilib.games.game.scoring
 
WinLoseDrawValueScoringStrategy() - Constructor for class net.sourceforge.cilib.games.game.scoring.WinLoseDrawValueScoringStrategy
 
withinClusterScatterCache - Variable in class net.sourceforge.cilib.functions.clustering.validityindices.ScatterSeperationRatio
 
WorkerBee - Class in net.sourceforge.cilib.boa.bee
A worker bee that forages for food and updates the hive information by dancing.
WorkerBee() - Constructor for class net.sourceforge.cilib.boa.bee.WorkerBee
Create a new instance with reasonable defaults set.
WorkerBee(WorkerBee) - Constructor for class net.sourceforge.cilib.boa.bee.WorkerBee
Copy constructor.
worstFitness() - Method in class net.sourceforge.cilib.functions.clustering.ClusteringFitnessFunction
 
worstFitness() - Method in class net.sourceforge.cilib.functions.clustering.validityindices.GeneralisedDunnIndex
 
write(String) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
writeDescription(Measurement) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
writeExternal(ObjectOutput) - Method in class net.sourceforge.cilib.type.types.Bit
Externalise the current object to the provided ObjectOutput.
writeExternal(ObjectOutput) - Method in class net.sourceforge.cilib.type.types.Int
Write this Int to the provided ObjectOutput.
writeExternal(ObjectOutput) - Method in class net.sourceforge.cilib.type.types.Long
Write this Long to the provided ObjectOutput.
writeExternal(ObjectOutput) - Method in class net.sourceforge.cilib.type.types.Real
Serialize the Real to the provided ObjectOutput.
writeExternal(ObjectOutput) - Method in class net.sourceforge.cilib.type.types.StringType
Write the contents of the StringType to an ObjectOutput.
writeLine(String) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 
writeMeasuredValue(Object, Algorithm, Measurement) - Method in class net.sourceforge.cilib.simulator.SynchronizedOutputBuffer
 

X

XMLAlgorithmFactory - Class in net.sourceforge.cilib.xml
 
XMLAlgorithmFactory() - Constructor for class net.sourceforge.cilib.xml.XMLAlgorithmFactory
 
XMLAlgorithmFactory(Document, Element) - Constructor for class net.sourceforge.cilib.xml.XMLAlgorithmFactory
Creates a new instance of XMLAlgorithmFactory.
XMLAlgorithmFactory(Element) - Constructor for class net.sourceforge.cilib.xml.XMLAlgorithmFactory
 
XMLMeasurementFactory - Class in net.sourceforge.cilib.xml
 
XMLMeasurementFactory() - Constructor for class net.sourceforge.cilib.xml.XMLMeasurementFactory
 
XMLMeasurementFactory(Document, Element) - Constructor for class net.sourceforge.cilib.xml.XMLMeasurementFactory
Creates a new instance of XMLMeasurementFactory.
XMLMeasurementFactory(Element) - Constructor for class net.sourceforge.cilib.xml.XMLMeasurementFactory
 
XMLmimic - Class in net.sourceforge.cilib.neuralnetwork.testarea
TODO: Complete this javadoc.
XMLObjectFactory - Class in net.sourceforge.cilib.xml
The XMLObjectFactory can be used to manage the construction of any object based on an XML description.
XMLObjectFactory(Element) - Constructor for class net.sourceforge.cilib.xml.XMLObjectFactory
Creates a new instance of XMLObjectFactory for constructing objects given an XML description.
XMLObjectFactory(Document, Element) - Constructor for class net.sourceforge.cilib.xml.XMLObjectFactory
Creates a new instance of XMLObjectFactory for constructing objects given an XML description and an XML document for handling idrefs.
XMLProblemFactory - Class in net.sourceforge.cilib.xml
 
XMLProblemFactory() - Constructor for class net.sourceforge.cilib.xml.XMLProblemFactory
 
XMLProblemFactory(Document, Element) - Constructor for class net.sourceforge.cilib.xml.XMLProblemFactory
Creates a new instance of XMLProblemFactory.
XMLProblemFactory(Element) - Constructor for class net.sourceforge.cilib.xml.XMLProblemFactory
 
XMLStoppingConditionFactory - Class in net.sourceforge.cilib.xml
 
XMLStoppingConditionFactory() - Constructor for class net.sourceforge.cilib.xml.XMLStoppingConditionFactory
 
XMLStoppingConditionFactory(Document, Element) - Constructor for class net.sourceforge.cilib.xml.XMLStoppingConditionFactory
Creates a new instance of XMLProgressIndicatorFactory.
XMLStoppingConditionFactory(Element) - Constructor for class net.sourceforge.cilib.xml.XMLStoppingConditionFactory
 

Z

Z - Class in net.sourceforge.cilib.type.creator
 
Z() - Constructor for class net.sourceforge.cilib.type.creator.Z
 
ZeroInitialVelocityStrategy - Class in net.sourceforge.cilib.pso.particle.initialisation
 
ZeroInitialVelocityStrategy() - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.ZeroInitialVelocityStrategy
 
ZeroInitialVelocityStrategy(ZeroInitialVelocityStrategy) - Constructor for class net.sourceforge.cilib.pso.particle.initialisation.ZeroInitialVelocityStrategy
 
ZeroSeederStrategy - Class in net.sourceforge.cilib.math.random.generator
A SeedSelectionStrategy that returns 0 as the seed value.
ZeroSeederStrategy() - Constructor for class net.sourceforge.cilib.math.random.generator.ZeroSeederStrategy
 
ZiffGFSR4 - Class in net.sourceforge.cilib.math.random.generator
The GFSR4 generator is like a lagged-fibonacci generator, and produces each number as an `xor''d sum of four previous values.
ZiffGFSR4() - Constructor for class net.sourceforge.cilib.math.random.generator.ZiffGFSR4
Create an instance of ZiffGFSR4.
ZiffGFSR4(long) - Constructor for class net.sourceforge.cilib.math.random.generator.ZiffGFSR4
Create an instance with the given seed value.
ZigZagShape - Class in net.sourceforge.cilib.games.game.tetris.shape
This class represents the ZigZag shape
ZigZagShape(int, int) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.ZigZagShape
 
ZigZagShape(AbstractShape) - Constructor for class net.sourceforge.cilib.games.game.tetris.shape.ZigZagShape
 
zMax - Variable in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Stores the calculated zMax value.
zMax() - Method in class net.sourceforge.cilib.functions.clustering.ParametricClusteringFunction
Calculate the maximum distance possible between two Vectors in the specified domain.

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