net.sourceforge.cilib.bioinf.rnaprediction
Class StemGenerator.PivotString

java.lang.Object
  net.sourceforge.cilib.bioinf.rnaprediction.StemGenerator.PivotString

Enclosing class:

StemGenerator

public class StemGenerator.PivotString
extends Object

Constructor Summary

StemGenerator.PivotString(String str, boolean pivotOn)

Method Summary

boolean	canBind(int index)
int	get3prime(int index)
int	get5prime(int index)
char	getComplimentaryNucleotide(int index)
char	getNucleotide(int index)
boolean	hasNext()
int	length()
boolean	next()
void	reset()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

StemGenerator.PivotString

public StemGenerator.PivotString(String str,
                                 boolean pivotOn)

Method Detail

length

public int length()

Returns:

the length of the overlapping part of the string

reset

public void reset()

hasNext

public boolean hasNext()

next

public boolean next()

getNucleotide

public char getNucleotide(int index)

getComplimentaryNucleotide

public char getComplimentaryNucleotide(int index)

get5prime

public int get5prime(int index)

get3prime

public int get3prime(int index)

canBind

public boolean canBind(int index)

toString

public String toString()

Overrides:

toString in class Object