net.sourceforge.cilib.bioinf.rnaprediction
Class ViennaRNAFitness

java.lang.Object
  net.sourceforge.cilib.measurement.single.Fitness
      net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
          net.sourceforge.cilib.bioinf.rnaprediction.ViennaRNAFitness

All Implemented Interfaces:

Serializable, Measurement, Cloneable

public class ViennaRNAFitness
extends RNAFitness

Author:

marais Uses the RNAeval program from the Vienna package to compute the Free Energy of the structure.

See Also:

Serialized Form

Field Summary

Fields inherited from class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness

nucleotides

Constructor Summary

ViennaRNAFitness()

ViennaRNAFitness(ViennaRNAFitness copy)

Method Summary

ViennaRNAFitness	getClone() Create a cloned copy of the current object and return it.
Double	getRNAFitness(RNAConformation stems)

Methods inherited from class net.sourceforge.cilib.measurement.single.Fitness

getDomain, getValue

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ViennaRNAFitness

public ViennaRNAFitness()

ViennaRNAFitness

public ViennaRNAFitness(ViennaRNAFitness copy)

Method Detail

getClone

public ViennaRNAFitness getClone()

Description copied from class: Fitness

Create a cloned copy of the current object and return it. In general the created copy will be a deep copy of the provided instance. As a result this operation an be quite expensive if used incorrectly.

Specified by:

getClone in interface Measurement

Specified by:

getClone in interface Cloneable

Specified by:

getClone in class RNAFitness

Returns:

An exact clone of the current object instance.

See Also:

Object.clone()

getRNAFitness

public Double getRNAFitness(RNAConformation stems)

Specified by:

getRNAFitness in class RNAFitness