Uses of Class
net.sourceforge.cilib.bioinf.rnaprediction.NucleotidePair

Packages that use NucleotidePair

net.sourceforge.cilib.bioinf.rnaprediction

Uses of NucleotidePair in net.sourceforge.cilib.bioinf.rnaprediction

Methods in net.sourceforge.cilib.bioinf.rnaprediction that return types with arguments of type NucleotidePair

Iterator<NucleotidePair>

RNAStem.iterator()

Methods in net.sourceforge.cilib.bioinf.rnaprediction with parameters of type NucleotidePair

boolean	RNAStem.add(NucleotidePair o)
int	NucleotidePair.compareTo(NucleotidePair o)
boolean	NucleotidePair.containedInside(NucleotidePair other) Returns true if this pair is 'inside' or 'internal' pair of other pair.
boolean	NucleotidePair.contains(NucleotidePair other) Returns true if other pair is 'inside' or 'internal' to this pair.
boolean	RNAConformation.contains(NucleotidePair pair) Determine if the current RNAConformation contains the provided NucleotidePair.
boolean	NucleotidePair.isPseudoknot(NucleotidePair other) Returns true if the base pairs form a pseudoknot formation.
boolean	NucleotidePair.shareBase(NucleotidePair other) Returns true if the pairs contains the same base.

Method parameters in net.sourceforge.cilib.bioinf.rnaprediction with type arguments of type NucleotidePair

boolean

RNAStem.addAll(Collection<? extends NucleotidePair> c)

Constructor parameters in net.sourceforge.cilib.bioinf.rnaprediction with type arguments of type NucleotidePair

RNAStem(ArrayList<NucleotidePair> basePairs)