net.sourceforge.cilib.bioinf.sequencealignment
Class DynamicProgramming

java.lang.Object
  net.sourceforge.cilib.bioinf.sequencealignment.DynamicProgramming

public class DynamicProgramming
extends Object

This class implements a technique for pairwise sequence alignment known as Dynamic Programming. It always gives the best possible alignment from 2 input sequences.

Author:

Fabien Zablocki

Constructor Summary

DynamicProgramming()

Method Summary

void	doJob()
void	setSequences(String a, String b)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DynamicProgramming

public DynamicProgramming()

Method Detail

setSequences

public void setSequences(String a,
                         String b)

doJob

public void doJob()