Hierarchy For Package net.sourceforge.cilib.bioinf.sequencealignment

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • net.sourceforge.cilib.bioinf.sequencealignment.AlignmentCreator
  • net.sourceforge.cilib.bioinf.sequencealignment.AlignmentVisualizer (implements net.sourceforge.cilib.measurement.Measurement)
  • net.sourceforge.cilib.bioinf.sequencealignment.BestMatch (implements net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod)
  • net.sourceforge.cilib.bioinf.sequencealignment.BinaryAlignmentCreator
  • net.sourceforge.cilib.bioinf.sequencealignment.BLOSUM62SoP (implements net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod)
  • net.sourceforge.cilib.problem.dataset.DataSetBuilder (implements net.sourceforge.cilib.util.Cloneable, java.lang.Iterable<T>, java.io.Serializable)
    • net.sourceforge.cilib.bioinf.sequencealignment.FASTADataSetBuilder
  • net.sourceforge.cilib.bioinf.sequencealignment.DesiredMaximizationFitness (implements net.sourceforge.cilib.stoppingcondition.StoppingCondition)
  • net.sourceforge.cilib.bioinf.sequencealignment.DynamicProgramming
  • net.sourceforge.cilib.bioinf.sequencealignment.GapFogel (implements net.sourceforge.cilib.bioinf.sequencealignment.GapPenaltiesMethod)
  • net.sourceforge.cilib.bioinf.sequencealignment.GapFourFour (implements net.sourceforge.cilib.bioinf.sequencealignment.GapPenaltiesMethod)
  • net.sourceforge.cilib.bioinf.sequencealignment.GapOpeningAndExtensionPenalty (implements net.sourceforge.cilib.bioinf.sequencealignment.GapPenaltiesMethod)
  • net.sourceforge.cilib.bioinf.sequencealignment.MatchFogel (implements net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod)
  • net.sourceforge.cilib.problem.OptimisationProblemAdapter (implements net.sourceforge.cilib.problem.OptimisationProblem)
    • net.sourceforge.cilib.bioinf.sequencealignment.BinaryMSAProblem
    • net.sourceforge.cilib.bioinf.sequencealignment.MSAProblem
  • net.sourceforge.cilib.bioinf.sequencealignment.PAM250SoP (implements net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod)
  • net.sourceforge.cilib.bioinf.sequencealignment.Similarity (implements net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod)

Interface Hierarchy

• net.sourceforge.cilib.bioinf.sequencealignment.GapPenaltiesMethod
• net.sourceforge.cilib.bioinf.sequencealignment.ScoringMethod