net.sourceforge.cilib.bioinf.sequencealignment
Interface GapPenaltiesMethod

All Known Implementing Classes:

GapFogel, GapFourFour, GapOpeningAndExtensionPenalty

public interface GapPenaltiesMethod

Public common interface for gap penalties methods (GapFogel, GapFourFour and GapOpeningAndExtensionPenalty).

Author:

Fabien Zablocki

Method Summary

double

getPenalty(ArrayList<String> alignment)

Method Detail

getPenalty

double getPenalty(ArrayList<String> alignment)