net.sourceforge.cilib.bioinf.rnaprediction
Class MathewsFitness

java.lang.Object
  extended by net.sourceforge.cilib.measurement.single.Fitness
      extended by net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
          extended by net.sourceforge.cilib.bioinf.rnaprediction.MathewsFitness
All Implemented Interfaces:
Serializable, Measurement, Cloneable

public class MathewsFitness
extends RNAFitness

Author:
mneethling TODO: Complete this javadoc.
See Also:
Serialized Form

Field Summary
 
Fields inherited from class net.sourceforge.cilib.bioinf.rnaprediction.RNAFitness
nucleotides
 
Constructor Summary
MathewsFitness()
           
MathewsFitness(MathewsFitness copy)
           
 
Method Summary
 MathewsFitness getClone()
          Create a cloned copy of the current object and return it.
 Double getRNAFitness(RNAConformation stems)
           
 Double getRNAFitness(Set<RNAStem> stems)
           
 
Methods inherited from class net.sourceforge.cilib.measurement.single.Fitness
getDomain, getValue
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MathewsFitness

public MathewsFitness()

MathewsFitness

public MathewsFitness(MathewsFitness copy)
Method Detail

getClone

public MathewsFitness getClone()
Description copied from class: Fitness
Create a cloned copy of the current object and return it. In general the created copy will be a deep copy of the provided instance. As a result this operation an be quite expensive if used incorrectly.

Specified by:
getClone in interface Measurement
Specified by:
getClone in interface Cloneable
Specified by:
getClone in class RNAFitness
Returns:
An exact clone of the current object instance.
See Also:
Object.clone()

getRNAFitness

public Double getRNAFitness(Set<RNAStem> stems)

getRNAFitness

public Double getRNAFitness(RNAConformation stems)
Specified by:
getRNAFitness in class RNAFitness


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