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| Packages that use RNAConformation | |
|---|---|
| net.sourceforge.cilib.bioinf.rnaprediction | |
| Uses of RNAConformation in net.sourceforge.cilib.bioinf.rnaprediction |
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| Fields in net.sourceforge.cilib.bioinf.rnaprediction declared as RNAConformation | |
|---|---|
RNAConformation |
NucleotideString.knownConf
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| Methods in net.sourceforge.cilib.bioinf.rnaprediction that return RNAConformation | |
|---|---|
RNAConformation |
RNAConformation.getClone()
Create a cloned copy of the current object and return it. |
RNAConformation |
NucleotideString.getKnowConf()
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| Methods in net.sourceforge.cilib.bioinf.rnaprediction with parameters of type RNAConformation | |
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Double |
HydrogenBondFitness.getRNAFitness(RNAConformation stems)
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Double |
Efn2RNAFitness.getRNAFitness(RNAConformation stems)
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Double |
MethewsFitness.getRNAFitness(RNAConformation stems)
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Double |
MathewsFitness.getRNAFitness(RNAConformation stems)
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Double |
SimpleRNAFitness.getRNAFitness(RNAConformation stems)
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abstract Double |
RNAFitness.getRNAFitness(RNAConformation stems)
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Double |
ViennaRNAFitness.getRNAFitness(RNAConformation stems)
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abstract void |
RNAFolder.refold(RNAConformation currentfolding,
RNAConformation openStems,
RNAConformation closeStems)
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void |
GreedyRNAFolder.refold(RNAConformation currentFolding,
RNAConformation openStems,
RNAConformation closeStems)
This method modifies the 'currentFolding' HashSet. |
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