Uses of Interface
net.sourceforge.cilib.util.Cloneable

Packages that use Cloneable

net.sourceforge.cilib.algorithm	The Algorithm package provides the generic algorithm foundation for all Algorithm instances.
net.sourceforge.cilib.algorithm.initialisation
net.sourceforge.cilib.algorithm.population
net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies
net.sourceforge.cilib.bioinf.rnaprediction
net.sourceforge.cilib.bioinf.sequencealignment
net.sourceforge.cilib.boa
net.sourceforge.cilib.boa.bee
net.sourceforge.cilib.boa.positionupdatestrategies
net.sourceforge.cilib.clustering.kmeans
net.sourceforge.cilib.coevolution
net.sourceforge.cilib.coevolution.competitors
net.sourceforge.cilib.coevolution.score
net.sourceforge.cilib.coevolution.score.fitnesscalculation
net.sourceforge.cilib.coevolution.selection
net.sourceforge.cilib.container
net.sourceforge.cilib.controlparameter	A ControlParameter is a generalised parameter type within CIlib.
net.sourceforge.cilib.cooperative
net.sourceforge.cilib.cooperative.algorithmiterators
net.sourceforge.cilib.ec
net.sourceforge.cilib.ec.iterationstrategies
net.sourceforge.cilib.entity
net.sourceforge.cilib.entity.operators
net.sourceforge.cilib.entity.operators.creation
net.sourceforge.cilib.entity.operators.crossover
net.sourceforge.cilib.entity.operators.general
net.sourceforge.cilib.entity.operators.mutation
net.sourceforge.cilib.entity.operators.selection
net.sourceforge.cilib.entity.topologies	This package contains different topology implementations.
net.sourceforge.cilib.functions	Collection of different types of functions.
net.sourceforge.cilib.functions.activation
net.sourceforge.cilib.functions.clustering
net.sourceforge.cilib.functions.clustering.validityindices
net.sourceforge.cilib.functions.continuous	TODO: Complete this javadoc.
net.sourceforge.cilib.functions.continuous.decorators
net.sourceforge.cilib.functions.continuous.dynamic
net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1
net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2
net.sourceforge.cilib.functions.continuous.unconstrained
net.sourceforge.cilib.functions.discrete
net.sourceforge.cilib.games.agent
net.sourceforge.cilib.games.agent.state
net.sourceforge.cilib.games.agent.state.evaluation
net.sourceforge.cilib.games.agent.state.traversal
net.sourceforge.cilib.games.game
net.sourceforge.cilib.games.game.predatorprey
net.sourceforge.cilib.games.game.predatorprey.init
net.sourceforge.cilib.games.game.tetris
net.sourceforge.cilib.games.game.tetris.shape
net.sourceforge.cilib.games.game.tictactoe
net.sourceforge.cilib.games.items
net.sourceforge.cilib.games.measurement
net.sourceforge.cilib.games.random
net.sourceforge.cilib.games.result
net.sourceforge.cilib.games.states
net.sourceforge.cilib.hs
net.sourceforge.cilib.math.random
net.sourceforge.cilib.math.random.generator
net.sourceforge.cilib.math.random.generator.quasi
net.sourceforge.cilib.measurement
net.sourceforge.cilib.measurement.generic
net.sourceforge.cilib.measurement.multiple
net.sourceforge.cilib.measurement.single
net.sourceforge.cilib.measurement.single.diversity
net.sourceforge.cilib.moo.archive.solutionweighing
net.sourceforge.cilib.moo.criterion
net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies
net.sourceforge.cilib.moo.iterationstrategies
net.sourceforge.cilib.neuralnetwork.foundation
net.sourceforge.cilib.neuralnetwork.foundation.measurements
net.sourceforge.cilib.neuralnetwork.generic
net.sourceforge.cilib.neuralnetwork.generic.datacontainers
net.sourceforge.cilib.neuralnetwork.generic.errorfunctions
net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators
net.sourceforge.cilib.neuralnetwork.generic.neuron
net.sourceforge.cilib.neuralnetwork.testarea
net.sourceforge.cilib.problem
net.sourceforge.cilib.problem.boundaryconstraint
net.sourceforge.cilib.problem.coevolution
net.sourceforge.cilib.problem.dataset
net.sourceforge.cilib.problem.mappingproblem
net.sourceforge.cilib.pso
net.sourceforge.cilib.pso.dynamic
net.sourceforge.cilib.pso.dynamic.detectionstrategies
net.sourceforge.cilib.pso.dynamic.responsestrategies
net.sourceforge.cilib.pso.iterationstrategies
net.sourceforge.cilib.pso.moo.guideselectionstrategies
net.sourceforge.cilib.pso.moo.guideupdatestrategies
net.sourceforge.cilib.pso.niching
net.sourceforge.cilib.pso.particle
net.sourceforge.cilib.pso.particle.initialisation
net.sourceforge.cilib.pso.positionupdatestrategies
net.sourceforge.cilib.pso.velocityupdatestrategies
net.sourceforge.cilib.simulator
net.sourceforge.cilib.stoppingcondition
net.sourceforge.cilib.type
net.sourceforge.cilib.type.types
net.sourceforge.cilib.type.types.container
net.sourceforge.cilib.util.calculator
net.sourceforge.cilib.util.selection.recipes
net.sourceforge.cilib.util.selection.weighing
net.sourceforge.cilib.util.selection.weighing.entity

Uses of Cloneable in net.sourceforge.cilib.algorithm

Subinterfaces of Cloneable in net.sourceforge.cilib.algorithm

interface

AlgorithmListener Any class can implement this interface to be notified about algorithm events.

Classes in net.sourceforge.cilib.algorithm that implement Cloneable

class	Algorithm All algorithms in CIlib should be subclasses of Algorithm.
class	MultistartOptimisationAlgorithm MultistartOptimisationAlgorithm is simply a wrapper.
class	SingularAlgorithm This class is the abstract base for all algorithms that do not fall within the normal Computational Intelligence type of algorithm.

Uses of Cloneable in net.sourceforge.cilib.algorithm.initialisation

Classes in net.sourceforge.cilib.algorithm.initialisation that implement Cloneable

class	ClonedPopulationInitialisationStrategy Create a collection of entities by cloning the given prototype Entity.
class	PopulationInitialisationStrategy Interface describing the manner in which populations are initialised.
class	SpecializedPopluationInitialisationStrategy Initialise a specialised collection of entity objects.

Uses of Cloneable in net.sourceforge.cilib.algorithm.population

Subinterfaces of Cloneable in net.sourceforge.cilib.algorithm.population

interface

IterationStrategy<E extends PopulationBasedAlgorithm> Interface to define the manner in which an iteration is defined for a PopulationBasedAlgorithm.

Classes in net.sourceforge.cilib.algorithm.population that implement Cloneable

class	AbstractIterationStrategy<E extends PopulationBasedAlgorithm> Generic IterationStrategy class for all population based algorithms.
class	MultiPopulationBasedAlgorithm Algorithm class to describe the notion of aggregated PopulationBasedAlgorithm instances.
class	MultiPopulationCriterionBasedAlgorithm Generic class that represents the case where a Criterion-based MultiPopulationBasedAlgorithm (like VEPSO) is used to solve a Multi-objective problem.
class	PopulationBasedAlgorithm Base class for all algorithms that manage a collection of entities in some manner.
class	SinglePopulationBasedAlgorithm Base class for algorithms that focus on a single populations of entities.

Uses of Cloneable in net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies

interface

KnowledgeTransferStrategy This interface is used in combination with a MultiPopulationBasedAlgorithm to enable different types of knowledge (like global best particle positions etc.) to be shared among different sub-populations during a search.

Classes in net.sourceforge.cilib.algorithm.population.knowledgetransferstrategies that implement Cloneable

class

SelectiveKnowledgeTransferStrategy An implementation of KnowledgeTransferStrategy where two Selection instances are used to first select a sub-population (PopulationBasedAlgorithm) from a collection of population-based algorithms (see MultiPopulationBasedAlgorithm) and then within this sub-population's {@link Topology}, which entity's knowledge is to be transfered to the caller requesting it.

Uses of Cloneable in net.sourceforge.cilib.bioinf.rnaprediction

Classes in net.sourceforge.cilib.bioinf.rnaprediction that implement Cloneable

class	Efn2RNAFitness
class	HydrogenBondFitness
class	MathewsFitness
class	MethewsFitness
class	RNAAccuracyMeasurement TODO: Complete this javadoc.
class	RNAConformation
class	RNAFitness
class	RNAOptimisationProblem
class	RNAParticle
class	RNAPSO
class	RNAStem
class	RNAStructureMeasurement
class	RNAVelocityUpdate
class	SimpleRNAFitness
class	ViennaRNAFitness

Uses of Cloneable in net.sourceforge.cilib.bioinf.sequencealignment

Classes in net.sourceforge.cilib.bioinf.sequencealignment that implement Cloneable

class	AlignmentVisualizer This class serves as a measurement, its puspose is to display the output alignment.
class	BinaryMSAProblem This class represents the Optimization Problem to be solved for the MSA (Binary representation).
class	DesiredMaximizationFitness This class serves as a crude implementation of a stopping condition that forces the optimizer to stop whenever a arbitrary fitness has been reached.
class	FASTADataSetBuilder Builds the input data set that gets fed as sequences to be aligned.
class	MSAProblem This class represents the Optimization Problem to be solved for the MSA (Real representation).

Uses of Cloneable in net.sourceforge.cilib.boa

Classes in net.sourceforge.cilib.boa that implement Cloneable

class

ABC An implementation of the Artificial Bee Colony Algorithm.

Uses of Cloneable in net.sourceforge.cilib.boa.bee

Subinterfaces of Cloneable in net.sourceforge.cilib.boa.bee

interface

HoneyBee Super interface for all types of bees in the artificial bee algorithm.

Classes in net.sourceforge.cilib.boa.bee that implement Cloneable

class	AbstractBee The entity class for the ABC algorithm that represents the bees.
class	ExplorerBee Represents the explorer bee in the algorithm.
class	OnlookerBee Represents an onlooker bee in the hive.
class	WorkerBee A worker bee that forages for food and updates the hive information by dancing.

Uses of Cloneable in net.sourceforge.cilib.boa.positionupdatestrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.boa.positionupdatestrategies

interface

BeePositionUpdateStrategy Interface for a bee position update strategy.

Classes in net.sourceforge.cilib.boa.positionupdatestrategies that implement Cloneable

class

VisualPositionUpdateStategy Represents the visual exploration strategy used by bees to choose a their next forage patch close by.

Uses of Cloneable in net.sourceforge.cilib.clustering.kmeans

Subinterfaces of Cloneable in net.sourceforge.cilib.clustering.kmeans

interface

CentroidsInitialisationStrategy This strategy allows for different ways of initializing the centroids of a clustering.

Classes in net.sourceforge.cilib.clustering.kmeans that implement Cloneable

class	DataSetBasedCentroidsInitialisationStrategy This strategy initializes the parts of the returned centroids Vector from randomly chosen patterns in the dataset.
class	KMeans This algorithm is an implementation of the KMeans Clustering algorithm.
class	RandomCentroidsInitialisationStrategy This strategy initializes the centroids of a clustering to random positions in the search space.

Uses of Cloneable in net.sourceforge.cilib.coevolution

Classes in net.sourceforge.cilib.coevolution that implement Cloneable

class	CoevolutionAlgorithm This is the framework for a coevolution algorithm, either competitive or cooperative
class	CoevolutionIterationStrategy Parent class of CompetitiveCoevolutionIterationStrategy and CooperativeCoevolutionIterationStrategy.
class	CoevolutionSynchronousIterationStrategy FIXME: Remove this class.
class	CompetitiveCoevolutionIterationStrategy This iteration strategy defines methods to select opponents.
class	FitnessSharingStrategy
class	StandardFitnessSharingStrategy example of implementation of an FitnessSharingStrategy.

Uses of Cloneable in net.sourceforge.cilib.coevolution.competitors

Classes in net.sourceforge.cilib.coevolution.competitors that implement Cloneable

class	CoevolutionCompetitorList This class maintains a list of competitors per population for a coevolution problem.
class	Competitor
class	PopulationCompetitorList This class represents a list of Competitor's with the same populationID

Uses of Cloneable in net.sourceforge.cilib.coevolution.score

Classes in net.sourceforge.cilib.coevolution.score that implement Cloneable

class

EntityScoreboard This class provides a means of keeping a competition history of one specific entity within a CoevolutionAlgorithm.

Uses of Cloneable in net.sourceforge.cilib.coevolution.score.fitnesscalculation

Classes in net.sourceforge.cilib.coevolution.score.fitnesscalculation that implement Cloneable

class	AveFitnessCalculationStrategy This Fitness calulation strategy simply gets the average score attained regardless of win/lose or draw as the Fitness value.
class	FitnessCalculationStrategy
class	PercentageWonFitnessCalculationStrategy This class uses the percentage games won as the Fitness value
class	TotalFitnessCalculationStrategy the fitness is the total Fitness over all the fitness values attained in each round

Uses of Cloneable in net.sourceforge.cilib.coevolution.selection

Classes in net.sourceforge.cilib.coevolution.selection that implement Cloneable

class	OpponentPoolSelectionStrategy This strategy is used to select the pool of potential opponents for a competitive coevolution algorithm.
class	OpponentSelectionStrategy This class determins how opponents are selected from the opponent pool.
class	SelectAllOpponentSelectionStrategy example of implementation of an OpponentSelectionStrategy, selects all the opponents in the pool
class	SelectAllSolutionsPoolSelectionStrategy Adds all the Entitys current positions to the pool of potentail opponents
class	SelectHOFPoolSelectionStrategy Maintains a HOF and adds the HOF Competitors to the pool
class	SelectNOpponentSelectionStrategy Select N random opponents from the pool of competitors
class	SelectpBestSolutionsPoolSelectionStrategy Add all the populations personal best vectors to the opponent pool, this can only be used on Algorithms that optimise Particles

Uses of Cloneable in net.sourceforge.cilib.container

Classes in net.sourceforge.cilib.container that implement Cloneable

class	BitArray This class represents an array of bit values and is efficient as the values are packed together.
class	Matrix<E> Deprecated.
class	Pair<K extends Comparable<? super K>,V> Simple structure to associate a key to a value.
class	SortedList<E extends Comparable<? super E>> A collection that always provides a list of elements that is sorted.

Uses of Cloneable in net.sourceforge.cilib.controlparameter

Subinterfaces of Cloneable in net.sourceforge.cilib.controlparameter

interface

ControlParameter A control parameter is a parameter that is used within most algorithm types.

Classes in net.sourceforge.cilib.controlparameter that implement Cloneable

class	BoundedControlParameter A control parameter instance that is defined to operate within a specific range of values.
class	ConstantControlParameter A control parameter to represent a constant value.
class	ExponentiallyDecreasingControlParameter A control parameter that is defined to update itself in an exponentially decreasing manner.
class	ExponentiallyIncreasingControlParameter A control parameter that is defined to update itself in an exponentially increasing manner.
class	LinearDecreasingControlParameter A control parameter that is defined to update itself in an linearly decreasing manner.
class	LinearIncreasingControlParameter A control parameter that is defined to update itself in an linearly increasing manner.
class	ProportionalControlParameter A control parameter that is defined to return a proportional value.
class	RandomizingControlParameter A control parameter that is defined to return a constant multiplied with a random number.

Uses of Cloneable in net.sourceforge.cilib.cooperative

Classes in net.sourceforge.cilib.cooperative that implement Cloneable

class	CooperativeEntity
class	HybridCooperativeAlgorithm
class	SplitCooperativeAlgorithm TODO test this class This class forms that basis for any co-operative optimisation implementations.

Uses of Cloneable in net.sourceforge.cilib.cooperative.algorithmiterators

Subinterfaces of Cloneable in net.sourceforge.cilib.cooperative.algorithmiterators

interface

AlgorithmIterator<E> TODO: Complete this Javadoc.

Classes in net.sourceforge.cilib.cooperative.algorithmiterators that implement Cloneable

class	RandomAlgorithmIterator<E extends Algorithm> Iterate through a list of Algorithms in a random order.
class	SequentialAlgorithmIterator<E extends Algorithm> Iterate through a list of Algorithms in a sequential order.

Uses of Cloneable in net.sourceforge.cilib.ec

Subinterfaces of Cloneable in net.sourceforge.cilib.ec

interface

PhenotypeUpdateStrategy

Classes in net.sourceforge.cilib.ec that implement Cloneable

class	EC Generic EC skeleton algorithm.
class	Individual
class	LognormalPhenotypeUpdateStrategy
class	StaticPhenotypeUpdateStrategy

Uses of Cloneable in net.sourceforge.cilib.ec.iterationstrategies

Classes in net.sourceforge.cilib.ec.iterationstrategies that implement Cloneable

class	DifferentialEvolutionIterationStrategy Evolutionary Strategy to implement the Differential Evolutionary Algorithm.
class	GeneticAlgorithmIterationStrategy TODO: Complete this javadoc.

Uses of Cloneable in net.sourceforge.cilib.entity

Subinterfaces of Cloneable in net.sourceforge.cilib.entity

interface	CandidateSolution Interface to describe the notion of a CandidateSoution.
interface	Entity This is the super interface which all corresponding entity implementation and extending interfaces, for use in population based algorithms, must implement/extend from.
interface	Particle Definition of a particle.
interface	SocialEntity An Entity that can recieve information from other Entities.
interface	Topology<E extends Entity> This is a generalization for all algorithms that maintain a collection of Entity objects.

Classes in net.sourceforge.cilib.entity that implement Cloneable

class	AbstractEntity Abstract class definition for all concrete Entity objects.
class	AbstractTopology<E extends Entity> This an abstract class which extends from the abstract Topology class.
class	CandidateSolutionMixin A CandidateSolution is a potential solution within an optimization.
class	Harmony Entity definition for a Harmony.

Uses of Cloneable in net.sourceforge.cilib.entity.operators

Subinterfaces of Cloneable in net.sourceforge.cilib.entity.operators

interface

Operator Interface to define all operators within the general structure of CIlib.

Classes in net.sourceforge.cilib.entity.operators that implement Cloneable

class

CompositeOperator Create a composte list of Operator instances.

Uses of Cloneable in net.sourceforge.cilib.entity.operators.creation

Subinterfaces of Cloneable in net.sourceforge.cilib.entity.operators.creation

interface

CreationStrategy Creation operator definition.

Classes in net.sourceforge.cilib.entity.operators.creation that implement Cloneable

class

RandCreationStrategy

Uses of Cloneable in net.sourceforge.cilib.entity.operators.crossover

Classes in net.sourceforge.cilib.entity.operators.crossover that implement Cloneable

class	BlendCrossoverStrategy Implementation of the blend cross-over strategy.
class	CrossoverStrategy
class	DifferentialEvolutionBinomialCrossover Binomial crossover operator.
class	DifferentialEvolutionExponentialCrossover
class	OnePointCrossoverStrategy
class	UniformCrossoverStrategy

Uses of Cloneable in net.sourceforge.cilib.entity.operators.general

Classes in net.sourceforge.cilib.entity.operators.general that implement Cloneable

class

TopologyLoopingOperator TODO: Complete this javadoc.

Uses of Cloneable in net.sourceforge.cilib.entity.operators.mutation

Classes in net.sourceforge.cilib.entity.operators.mutation that implement Cloneable

class	CauchyMutationStrategy
class	GaussianMutationStrategy
class	MutationStrategy
class	UniformMutationStrategy

Uses of Cloneable in net.sourceforge.cilib.entity.operators.selection

Classes in net.sourceforge.cilib.entity.operators.selection that implement Cloneable

class	CompoundSelection This class implements the Composite design pattern to correctly apply a group of selection operators to perform a specific selection.
class	ElitistSelectionStrategy
class	RandomSelectionStrategy
class	RouletteWheelSelectionStrategy This class implements Roulette Wheel selection, also known as proportionate selection.
class	SelectionStrategy
class	TournamentSelectionStrategy Perform a tournament selection process on the provided Topology with a predefined tournament size.

Uses of Cloneable in net.sourceforge.cilib.entity.topologies

Classes in net.sourceforge.cilib.entity.topologies that implement Cloneable

class	GBestTopology<E extends Entity> Implementation of the gbest neighbourhood topology.
class	HypercubeTopology<E extends Entity>
class	LBestTopology<E extends Entity> Implementation of the Local Best Neighbourhood topology.
class	VonNeumannTopology<E extends Entity> Implementation of the Von Neumann neighbourhood topology.

Uses of Cloneable in net.sourceforge.cilib.functions

Classes in net.sourceforge.cilib.functions that implement Cloneable

class	ContinuousFunction
class	DiscreteFunction
class	Function All functions should inherit from Function.

Uses of Cloneable in net.sourceforge.cilib.functions.activation

Classes in net.sourceforge.cilib.functions.activation that implement Cloneable

class	ActivationFunction Activation functions are functions that are typically used within Neurons.
class	Sigmoid The generalised sigmoid function.

Uses of Cloneable in net.sourceforge.cilib.functions.clustering

Classes in net.sourceforge.cilib.functions.clustering that implement Cloneable

class	ClusteringFitnessFunction This abstract class defines member variables and member functions that can be used by subclasses to calculate the fitness of a particular clustering in their respective evaluate methods. This class makes extensive use of the ClusteringUtils helper class.
class	InterClusterDistance This clustering fitness function will probably never be used to train on directly.
class	IntraClusterDistance This clustering fitness function will probably never be used to train on directly.
class	KHarmonicMeansFunction This is the k-harmonic means clustering fitness function.
class	NonParametricClusteringFunction This class makes use of the helper/member functions defined and implemented in {@linkplain ClusteringFitnessFunction) to calculate a non-parameterised fitness of a particular clustering in the calculateFitness method.
class	ParametricClusteringFunction This class makes use of the helper/member functions defined and implemented in ClusteringFitnessFunction to calculate a parameterised fitness of a particular clustering in the calculateFitness method.
class	ParametricWithQuantisationErrorFunction This class makes use of the helper/member functions defined and implemented in {@linkplain ClusteringFitnessFunction) to calculate an improved parameterised fitness of a particular clustering in the calculateFitness method.
class	QuantisationErrorFunction This class makes use of the helper/member functions defined and implemented in ClusteringFitnessFunction to calculate the Quantisation Error of a particular clustering in the calculateFitness method.

Uses of Cloneable in net.sourceforge.cilib.functions.clustering.validityindices

Classes in net.sourceforge.cilib.functions.clustering.validityindices that implement Cloneable

class	DaviesBouldinIndex This is the Davies-Bouldin Validity Index.
class	DunnIndex This is the Dunn Validity Index.
class	DunnIndex33 This is the Dunn Index 33.
class	DunnIndex53 DunnIndex53.
class	GeneralisedDunnIndex This is the Generalised Dunn Index.
class	HalkidiVazirgiannisIndex This is the Halkidi-Vazirgiannis Validity Index.
class	MaulikBandyopadhyayIndex MaulikBandyopadhyayIndex.
class	ScatterSeperationRatio The ScatterSeperationRatio class was created due to the fact that some validity indices make use of the cluster scatter and cluster seperation concepts.
class	TuriIndex This is the Turi Validity Index as given in Section 3.1.4 on page 66 of Mahamed G.
class	VeenmanReindersBackerIndex This is the Veenman-Reinders-Backer Validity Index.

Uses of Cloneable in net.sourceforge.cilib.functions.continuous

Classes in net.sourceforge.cilib.functions.continuous that implement Cloneable

class	ContinuousStep The continuous Step function.
class	ExpressionFunction A Function class that defines a function based on a predefined string which is parsed and interpreted during evaluation.
class	Foxholes This is an implementation of the Foxholes function.
class	FunctionDimensionMapping TODO: Complete this javadoc.
class	GoldsteinPrice The Goldstein-Price function. Minimum: f(x) = 3; x = (0, -1) -2 <= x <= 2
class	Himmelblau The Himmelblau function.
class	HyperEllipsoid HyperEllipsoid.
class	MaximumDeratingFunction1
class	Michalewicz12 Michalewicz function.
class	MultimodalFunction1 TODO: Complete this javadoc.
class	MultimodalFunction2
class	MultimodalFunction3 TODO: Complete this javadoc.
class	MultimodalFunction4 TODO: Complete this javadoc.
class	MultimodalFunction5 TODO: Complete this javadoc.
class	NastyBenchmark TODO: Complete this javadoc.
class	Neumaier3
class	NichePSOF1
class	Quadric
class	Quartic The Quartic function.
class	Ripple Ripple function.
class	Salomon Salomon function.
class	Schaffer2
class	Schaffer6 The Schaffer F6 function.
class	Schwefel Schwefel function.
class	SchwefelProblem1_2 SchwefelProblem1_2.
class	SchwefelProblem2_21 SchwefelProblem2_21.
class	SchwefelProblem2_22 SchwefelProblem2_22.
class	SchwefelProblem2_26 SchwefelProblem 2_26.
class	ShekelN
class	ShekelsFoxholes ShekelsFoxholes function.
class	Shir The Damavandi function obtained from O.M.
class	Shubert Shubert function.
class	SixHumpCamelBack SixHumpCamelBack function.
class	Step TODO: Complete this javadoc.
class	UrsemF1 UrsemF1 function.
class	UrsemF3 UrsemF3 function.
class	UrsemF4 UrsemF4 function.

Uses of Cloneable in net.sourceforge.cilib.functions.continuous.decorators

Classes in net.sourceforge.cilib.functions.continuous.decorators that implement Cloneable

class	AngleModulation A Decorator pattern class to wrap a normal function to perform Angle Modulation.
class	InvertedFunctionDecorator Function implementation to accept a function and to return the reciprocal of that function value.
class	NoisyFunctionDecorator
class	ReflectedFunctionDecorator Class to reflect the wrapped Function in a horizontal or vertical fashion.
class	RotatedFunctionDecorator
class	ScaledFunctionDecorator Characteristics: Let c be a fixed positive number.
class	ShiftedFunctionDecorator ShiftedFunctionDecorator.

Uses of Cloneable in net.sourceforge.cilib.functions.continuous.dynamic

Classes in net.sourceforge.cilib.functions.continuous.dynamic that implement Cloneable

class

MovingPeaks

Uses of Cloneable in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1

Classes in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda1 that implement Cloneable

class	FDA1_f1 This function is the f1 function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA1_f2 This function is the g*h function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA1_g This function is the g function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA1_h This function is the h function of the FDA1 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.

Uses of Cloneable in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2

Classes in net.sourceforge.cilib.functions.continuous.dynamic.moo.fda2 that implement Cloneable

class	FDA2_f1 This function is the f1 function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA2_f2 This function is the g*h function of the FDA2 problem defined on page 428 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA2_g This function is the g function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.
class	FDA2_h This function is the h function of the FDA2 problem defined on page 429 in the following paper: M.Farina, K.Deb, P.Amato.

Uses of Cloneable in net.sourceforge.cilib.functions.continuous.unconstrained

Classes in net.sourceforge.cilib.functions.continuous.unconstrained that implement Cloneable

class	AbsoluteValue The Absolute Value Function.
class	Ackley The Generalized Ackley.
class	Beale Beale Function.
class	Bird Bird Function
class	Bohachevsky1 Bohachevsky 1
class	Bohachevsky2 Bohachevsky 2.
class	Bohachevsky3 Bohachevsky 3.
class	Booth Booth Function
class	Branin Booth Function
class	Bukin4 Bukin 4 Function.
class	Bukin6 Bukin 6 Function.
class	Colville The Colville Function.
class	Damavandi The Damavandi function obtained from N.
class	Easom Easom function as taken from www-optima.amp.i.kyoto-u.ac.jp/member/student/hedar/Hedar_files/TestGO_files
class	Griewank Generalised Griewank function.
class	Michalewicz Michalewicz funtion 12.
class	Rastrigin The rastrigin function.
class	Rosenbrock Generalised Rosenbrock function.
class	Spherical Spherical function.

Uses of Cloneable in net.sourceforge.cilib.functions.discrete

Classes in net.sourceforge.cilib.functions.discrete that implement Cloneable

class	BinaryAdapter Class to convert a binary vector into a continuous vector for optimisation of continous problems by a binary optimiser.
class	BitStringMatcher Discrete function to match the given bit string or a randomly generated bit string.
class	KnapSack Perform the knapsack problem optimisation.
class	KnightCoverageProblem Deprecated.
class	KnightsCoverage
class	KnightsTour An implementation of the Knight's Tour problem function.
class	LongestCommonSubsequence Implementation of the Longest Common Subsequence problem.
class	Queens Implementation of the a function to return the fitness of the Queens problem.

Uses of Cloneable in net.sourceforge.cilib.games.agent

Classes in net.sourceforge.cilib.games.agent that implement Cloneable

class	Agent This class represents a game playing agent.
class	NeuralAgent
class	RandomAgent This is an agent that chooses a random state as its decision, it will only work on Game's that impliment StateGame

Uses of Cloneable in net.sourceforge.cilib.games.agent.state

Classes in net.sourceforge.cilib.games.agent.state that implement Cloneable

class

StateEvaluationAgent

Uses of Cloneable in net.sourceforge.cilib.games.agent.state.evaluation

Classes in net.sourceforge.cilib.games.agent.state.evaluation that implement Cloneable

class

NeuralStateEvaluator

Uses of Cloneable in net.sourceforge.cilib.games.agent.state.traversal

Classes in net.sourceforge.cilib.games.agent.state.traversal that implement Cloneable

class	MinMaxAlphaBetaTraversalStrategy
class	StateTraversalStrategy

Uses of Cloneable in net.sourceforge.cilib.games.game

Classes in net.sourceforge.cilib.games.game that implement Cloneable

class	Game<E extends GameState>
class	GridGame

Uses of Cloneable in net.sourceforge.cilib.games.game.predatorprey

Classes in net.sourceforge.cilib.games.game.predatorprey that implement Cloneable

class	PredatorPreyGame
class	RealTimePredatorPreyGame

Uses of Cloneable in net.sourceforge.cilib.games.game.predatorprey.init

Classes in net.sourceforge.cilib.games.game.predatorprey.init that implement Cloneable

class	MinMaxDistanceInitializationStrategy
class	PredPreyPositionInitializationStrategy
class	RandomPredPreyInitializationStrategy
class	StaticPositionInitializationStrategy

Uses of Cloneable in net.sourceforge.cilib.games.game.tetris

Classes in net.sourceforge.cilib.games.game.tetris that implement Cloneable

class	AveTetrisFeaturesMeasure
class	Tetris This is an implimentation of the game of Tetris.
class	TetrisBlock
class	TetrisGameState This class represents a Tetris game state.

Uses of Cloneable in net.sourceforge.cilib.games.game.tetris.shape

Classes in net.sourceforge.cilib.games.game.tetris.shape that implement Cloneable

class	AbstractShape This class represents a Shape in tetris.
class	BoxShape This class represents the Box shape
class	LineShape This class represents the line shape
class	LShape This class represents the L shape
class	RLShape This class represents the reverse L shape
class	RZigZagShape This class represents the Reverse ZigZag shape
class	TShape This class represents the T shape
class	ZigZagShape This class represents the ZigZag shape

Uses of Cloneable in net.sourceforge.cilib.games.game.tictactoe

Classes in net.sourceforge.cilib.games.game.tictactoe that implement Cloneable

class

TicTacToe This is an implimentation of the game of Tic Tac Toe

Uses of Cloneable in net.sourceforge.cilib.games.items

Subinterfaces of Cloneable in net.sourceforge.cilib.games.items

interface

ItemLocation

Classes in net.sourceforge.cilib.games.items that implement Cloneable

class	GameItem Any object that exists in the game.
class	GridItem An object in the game that is located in a grid.
class	GridLocation
class	PlayerItem any game item controlled by a player

Uses of Cloneable in net.sourceforge.cilib.games.measurement

Classes in net.sourceforge.cilib.games.measurement that implement Cloneable

class	AgentMeasure
class	AverageItemDistanceMeasure
class	RecordItemLocationMeasure Record each location an Agent has occupied at each timestep in the game.
class	SingleAgentMeasure This defines an AgentMeasure that only records information for a specified Agent As specified by the given GameToken

Uses of Cloneable in net.sourceforge.cilib.games.random

Classes in net.sourceforge.cilib.games.random that implement Cloneable

class	FixedListSeedingStrategy This class is similar to the ListSeedingStrategy but differs in the following way.
class	FixedSeedStrategy This seeding strategy always uses the same seed.
class	GameSeedingStrategy This class is used to generate random numbers for Game's.
class	ListSeedingStrategy This class contains a list of seed values to use.
class	RandomListSeedingStrategy
class	UniqueSeedingStrategy This is a seeding strategy that generates a unique seed everytime the seedGenerator method is called.

Uses of Cloneable in net.sourceforge.cilib.games.result

Classes in net.sourceforge.cilib.games.result that implement Cloneable

class	AbstractGameResult
class	DrawResult
class	ScoreGameResult
class	WinGameResult

Uses of Cloneable in net.sourceforge.cilib.games.states

Classes in net.sourceforge.cilib.games.states that implement Cloneable

class	GameState
class	GridGameState This is a GameState where all the GameItem's are stored in a matrix.
class	ListGameState This is a GameState where GameItem's are stored in a list of items.

Uses of Cloneable in net.sourceforge.cilib.hs

Classes in net.sourceforge.cilib.hs that implement Cloneable

class

HS Harmony Search as published in K.S.

Uses of Cloneable in net.sourceforge.cilib.math.random

Classes in net.sourceforge.cilib.math.random that implement Cloneable

class

RandomNumber This class provides the needed functionality to sample random numbers from different continuous valued distributions.

Uses of Cloneable in net.sourceforge.cilib.math.random.generator

Classes in net.sourceforge.cilib.math.random.generator that implement Cloneable

class	KnuthSubtractive An implementation of Knuth's subtractive random number generator.
class	MersenneTwister This is an implementation of the MT19937 random number generator.
class	Random
class	RANLUX This is an implementation of Martin Luescher's second generation double-precision (48-bit) version of the RANLUX generator.
class	Tausworthe This is a maximally equidistributed combined Tausworthe generator by L'Ecuyer.
class	ZiffGFSR4 The GFSR4 generator is like a lagged-fibonacci generator, and produces each number as an `xor''d sum of four previous values.

Uses of Cloneable in net.sourceforge.cilib.math.random.generator.quasi

Classes in net.sourceforge.cilib.math.random.generator.quasi that implement Cloneable

class	QuasiRandom TODO: Need to complete javadoc.
class	Sobol Implementation adapted from http://people.scs.fsu.edu/~burkardt/f_src/sobol/sobol.html.

Uses of Cloneable in net.sourceforge.cilib.measurement

Subinterfaces of Cloneable in net.sourceforge.cilib.measurement

interface

Measurement All measurements must implement this interface.

Classes in net.sourceforge.cilib.measurement that implement Cloneable

class

StateAwareMeasurement This class serves as the base class for all state based measurements.

Uses of Cloneable in net.sourceforge.cilib.measurement.generic

Classes in net.sourceforge.cilib.measurement.generic that implement Cloneable

class	Iterations
class	PercentageComplete
class	Restarts
class	Time

Uses of Cloneable in net.sourceforge.cilib.measurement.multiple

Classes in net.sourceforge.cilib.measurement.multiple that implement Cloneable

class	CompositeMeasurement Measurement to perform measurements on a set of contained Algorithm instances.
class	MultipleFitness Deprecated. This class is no longer valid. A combination of the CompositeMeasurement and Fitness should be used instead
class	MultipleSolutions Deprecated. This class is no longer valid. A combination of the CompositeMeasurement and Solution should be used instead
class	MultiPopulationFitness
class	ParetoOptimalFront Measures the set of non-dominated objective vectors withing an archive.
class	ParetoOptimalSet Measures the set of non-dominated decision vectors within an archive.

Uses of Cloneable in net.sourceforge.cilib.measurement.single

Classes in net.sourceforge.cilib.measurement.single that implement Cloneable

class	BestParticlePosition Print the position of the best particle in the swarm.
class	BestPositionBoundViolations Checks of the best position in the current population violates boundary constraints.
class	ConvergedDimensions Calculates the average number of dimensions over all particles that have converged within a specified error from the specified optimum.
class	Diameter Calculates the swarm diameter as the maximum euclidean distance between any two particles.
class	DimensionBoundViolationsPerParticle Calculates the average number of violations of boundary constraints with respect to each dimension.
class	Diversity Function to calculate the diversity of a swarm according to the definition of Krink et al
class	EuclideanDiversityAroundGBest TODO: Complete this javadoc.
class	Fitness
class	FitnessEvaluations
class	FunctionOptimisationError
class	GenericFunctionMeasurement
class	NormalisedDiversity TODO: Rather let this extend Diversity, call super.getValue, but how to type-cast this back to a double?
class	NumberOfClustersFormed This measurement measures the number of clusters that were formed during a particular clustering.
class	ParticleBoundViolations Calculates the average number of particles in the current swarm that violates boundary constraints.
class	ParticlePositions
class	PbestBoundViolations Calculates the average number of personal best positions in the current swarm that violates boundary constraints.
class	Solution
class	SpatialExtent Function to calculate the diversity measure, spatial extent as defined by Blackwell
class	StoredFitness This measurement only works for PSO.

Uses of Cloneable in net.sourceforge.cilib.measurement.single.diversity

Classes in net.sourceforge.cilib.measurement.single.diversity that implement Cloneable

class

AverageDiversityAroundAllEntities

Uses of Cloneable in net.sourceforge.cilib.moo.archive.solutionweighing

Subinterfaces of Cloneable in net.sourceforge.cilib.moo.archive.solutionweighing

interface

SolutionWeighing Weighs an optimisation solution for selection to be either removed from the Archive or selected to be used as guide during the search process.

Classes in net.sourceforge.cilib.moo.archive.solutionweighing that implement Cloneable

class

AntiClusterWeighing An implementation of SolutionWeighing that weighs a collection of OptimisationSolutions based on how closely clustered these solutions are to one another.

Uses of Cloneable in net.sourceforge.cilib.moo.criterion

Classes in net.sourceforge.cilib.moo.criterion that implement Cloneable

class

CriterionBasedMOProblemAdapter Serves as an adapter for a MOOptimisationProblem and converts it to a single-objective optimisation problem by selecting one of the sub-objectives as its active objective.

Uses of Cloneable in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies

interface

ObjectiveAssignmentStrategy Used by MultiPopulationCriterionBasedAlgorithm to assign the different sub-objectives in a MOOptimisationProblem to specific PopulationBasedAlgorithms.

Classes in net.sourceforge.cilib.moo.criterion.objectiveassignmentstrategies that implement Cloneable

class	RandomObjectiveAssignmentStrategy Randomly assigns the sub-objectives of a MOOptimisationProblem to different PopulationBasedAlgorithms.
class	SequentialObjectiveAssignmentStrategy Sequentially assigns the sub-objectives of a MOOptimisationProblem to different PopulationBasedAlgorithm instances.

Uses of Cloneable in net.sourceforge.cilib.moo.iterationstrategies

Classes in net.sourceforge.cilib.moo.iterationstrategies that implement Cloneable

class

ArchivingIterationStrategy<E extends PopulationBasedAlgorithm> A generic multi-objective IterationStrategy class that wraps another IterationStrategy and is responsible for populating the Archive of Pareto optimal solutions after the execution of the inner IterationStrategy class.

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.foundation

Subinterfaces of Cloneable in net.sourceforge.cilib.neuralnetwork.foundation

interface	NeuralNetworkDataIterator TODO: Complete the javadoc.
interface	NNError TODO: Complete this javadoc.
interface	NNPattern TODO: Complete this javadoc.

Classes in net.sourceforge.cilib.neuralnetwork.foundation that implement Cloneable

class	EvaluationMediator
class	NeuralNetworkController Deprecated. This class is no longer viable - Please see EvaluationMediator
class	NeuralNetworkProblem Deprecated. This class is no longer really valid.

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.foundation.measurements

Classes in net.sourceforge.cilib.neuralnetwork.foundation.measurements that implement Cloneable

class	AreaUnderROC TODO: Fill in some javadoc.
class	DcPatternCount TODO: Complete this javadoc.
class	DgPatternCount TODO: Complete this javadoc.
class	DtPatternCount TODO: Complete the javadoc.
class	DvPatternCount TODO: Complete this javadoc.
class	ErrorDg TODO: Complete this javadoc.
class	ErrorDt TODO: complete this javadoc.
class	ErrorDv TODO: Complete this javadoc.
class	NNOutput Measurement to determine the output of a Neural Network.
class	RobelOverfittingRho TODO: Complete this javadoc.

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.generic

Classes in net.sourceforge.cilib.neuralnetwork.generic that implement Cloneable

class

Weight

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.generic.datacontainers

Classes in net.sourceforge.cilib.neuralnetwork.generic.datacontainers that implement Cloneable

class	LinearDataIterator
class	StandardPattern

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.generic.errorfunctions

Classes in net.sourceforge.cilib.neuralnetwork.generic.errorfunctions that implement Cloneable

class	ClassificationErrorReal
class	MSEErrorFunction

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators

Classes in net.sourceforge.cilib.neuralnetwork.generic.evaluationmediators that implement Cloneable

class	FFNNEvaluationMediator Deprecated.
class	SAILAEvaluationMediator

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.generic.neuron

Subinterfaces of Cloneable in net.sourceforge.cilib.neuralnetwork.generic.neuron

interface

NeuronFunction This is the interface that a Neuron output function needs to conform to.

Classes in net.sourceforge.cilib.neuralnetwork.generic.neuron that implement Cloneable

class	HyperbollicTangentOutputFunction Hyperbollic Tangent Function.
class	LinearOutputFunction
class	SigmoidOutputFunction Deprecated. This class should be replaced by Sigmoid
class	TanHOutputFunction Hyperbollic Tangent Function.

Uses of Cloneable in net.sourceforge.cilib.neuralnetwork.testarea

Classes in net.sourceforge.cilib.neuralnetwork.testarea that implement Cloneable

class

NNFunctionAdapter TODO: Complete this javadoc.

Uses of Cloneable in net.sourceforge.cilib.problem

Subinterfaces of Cloneable in net.sourceforge.cilib.problem

interface	Fitness This interface is an abstraction for the fitness of a solution to an optimisation problem.
interface	OptimisationProblem Optimisation problems are characterized by a domain that specifies the search space and a fitness given a potential solution.
interface	Problem This is a common abstraction for all problem classes.

Classes in net.sourceforge.cilib.problem that implement Cloneable

class	ClusteringProblem This class is used to setup/configure a problem that is capable of clustering the data in a dataset, more specifically the data contained in an AssociatedPairDataSetBuilder.
class	CooperativeOptimisationProblemAdapter TODO test this class.
class	DeratingFunctionMaximisationProblem Title: DeratingFunctionMaximisationProblem
class	DiscreteOptimisationProblem This class further extends the logical separation between a standard type of problem, usually placed in the real valued space, to enable Discrete problems.
class	FunctionLearningProblem
class	FunctionMaximisationProblem
class	FunctionMinimisationProblem An implementation of OptimisationProblemAdapter that can be used to find the minimum of any Function.
class	FunctionOptimisationProblem This class serves as a base class for function optimisation problems using a Function.
class	GradientFunctionMinimisationProblem
class	InferiorFitness This class is used to represent a fitness value that is always inferior.
class	MaximisationFitness
class	MinimisationFitness This class implements the Comparable interface for a minimisation problem.
class	MOFitness
class	MOOptimisationProblem
class	OptimisationProblemAdapter This is a convenience class that keeps track of the number of fitness evaluations.

Uses of Cloneable in net.sourceforge.cilib.problem.boundaryconstraint

Subinterfaces of Cloneable in net.sourceforge.cilib.problem.boundaryconstraint

interface

BoundaryConstraint Enforce predefined boundary constraints on Entity instances that are operating in the current search space.

Classes in net.sourceforge.cilib.problem.boundaryconstraint that implement Cloneable

class	BouncingBoundaryConstraint Instead of making use of reactive boundary constraints that reinitialise an entire Particle (or components thereof), this class is a proactive approach to prevent the Particle from moving outside of the domain.
class	ClampingBoundaryConstraint Prevent any Entity from over-shooting the problem search space.
class	DeflectionBoundaryConstraint Particles that overstep the boundary get re-initialised to simulate a bouncing effect by flipping the velocity (multiplying it with -1.0).
class	NearestBoundaryConstraint If a particle oversteps the boundary it gets re-initialised and placed on the overstepped boundary.
class	PerElementReinitialisation Reinitialise each element within the provided Type element if it is no longer within the valid search space.
class	PeriodicBoundaryConstraint If a particle oversteps the upper boundary it gets re-initialised and placed near the lower boundary and vice versa.
class	RandomBoundaryConstraint If a particle oversteps the boundary it gets randomly re-initialised within the boundary and its velocity gets updated.
class	ReinitialisationBoundary Once the entity has over shot the search space boundaries, re-initialise the Entity once again to be witihin the search space of the problem at a random position.
class	UnconstrainedBoundary This is the default boundary constraint, whereby no boundary checking is performed.

Uses of Cloneable in net.sourceforge.cilib.problem.coevolution

Classes in net.sourceforge.cilib.problem.coevolution that implement Cloneable

class	CompetitiveCoevolutionGameLearningOptimizationProblem This class is used by CoevolutionAlgorithm to optimize a Game.
class	CompetitiveCoevolutionProblemAdapter This class is used by the sub populations of a competitive coevolution algorithm.
class	GameLearningOptimizationProblem Optimize either a single player game or a game against hand coded opponents
class	PerformanceEvaluationOptimizationProblem

Uses of Cloneable in net.sourceforge.cilib.problem.dataset

Classes in net.sourceforge.cilib.problem.dataset that implement Cloneable

class	AssociatedPairDataSetBuilder This class "collects" and holds all the patterns of the DataSets specified through the AssociatedPairDataSetBuilder.addDataSet(DataSet) method.
class	BinaryDataSetBuilder TODO: COmplete this javadoc.
static class	ClusterableDataSet.Pattern TODO: Complete this javadoc.
class	DataSet This interface provides an abstraction for accessing data sets.
class	DataSetBuilder
class	LocalDataSet This class represents a local dataset, i.e.
class	MatrixDataSetBuilder TODO: This needs to implement the reading of a matrix as needed by MappingProblem.
class	StringDataSetBuilder
class	TextDataSetBuilder TODO: Complete this javadoc.

Uses of Cloneable in net.sourceforge.cilib.problem.mappingproblem

Classes in net.sourceforge.cilib.problem.mappingproblem that implement Cloneable

class	FunctionDimensionMappingProblem TODO: Complete this javadoc.
class	LinearMappingProblem This class provides an adapter for implementation of NonlinearMapping evaluation functions.
class	MappingProblem Abstract MappingProblem class that allows for implementing methods of mapping high-dimensional data onto lower dimensions.

Uses of Cloneable in net.sourceforge.cilib.pso

Classes in net.sourceforge.cilib.pso that implement Cloneable

class	LFPSO An implementation of the LeapFrog PSO algorithm, a modified Particle Swarm Optimiser based upon the improved leapfrog dynamic method for unconstrained minimization.
class	PSO An implementation of the standard PSO algorithm.

Uses of Cloneable in net.sourceforge.cilib.pso.dynamic

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.dynamic

interface

ChargedParticleInitialisationStrategy Interface for ChargedParticle intialisation.

Classes in net.sourceforge.cilib.pso.dynamic that implement Cloneable

class	ChargedParticle Charged Particle used by charged PSO (ChargedVelocityUpdate).
class	ChargedVelocityUpdateStrategy Velocity update strategy that the so called Charged PSO makes use of.
class	DynamicIterationStrategy<E extends PopulationBasedAlgorithm> Dynamic iteration strategy for PSO in dynamic environments.
class	DynamicParticle Special particle type to use with dynamic algorithms.
class	MovingPeaksOfflineErrorMeasurement
class	MovingPeaksOfflinePerformanceMeasurement
class	QuantumPositionUpdateStrategy Position update strategy for QSO (Quantum PSO).
class	QuantumVelocityUpdateStrategy Velocity update strategy for QSO (Quantum PSO).
class	StandardChargedParticleInitialisationStrategy

Uses of Cloneable in net.sourceforge.cilib.pso.dynamic.detectionstrategies

Classes in net.sourceforge.cilib.pso.dynamic.detectionstrategies that implement Cloneable

class	EnvironmentChangeDetectionStrategy<E extends PopulationBasedAlgorithm> This abstract class defines the interface that detection strategies have to adhere to.
class	NeighbourhoodBestSentriesDetectionStrategy<E extends PopulationBasedAlgorithm>
class	PeriodicDetectionStrategy<E extends PopulationBasedAlgorithm>
class	RandomSentriesDetectionStrategy<E extends PopulationBasedAlgorithm> This class defines a detection strategy that uses a user-specified number of sentry entities and an value to detect whether a change has occured in the environment.
class	RandomSentryDetectionStrategy<E extends PopulationBasedAlgorithm> Deprecated. rather use RandomSentriesDetectionStrategy
class	RandomSentryPointsDetectionStrategy<E extends PopulationBasedAlgorithm> This class defines a detection strategy that uses a user-specified number of sentry points and an value to detect whether a change has occured in the environment within a number of consecutive iterations.
class	TopologyBestSentryDetectionStrategy<E extends PopulationBasedAlgorithm>

Uses of Cloneable in net.sourceforge.cilib.pso.dynamic.responsestrategies

Classes in net.sourceforge.cilib.pso.dynamic.responsestrategies that implement Cloneable

class	ArchiveReevaluationResponseStrategy
class	CompetitiveCoevolutionParticleReevaluationResponseStrategy<E extends PopulationBasedAlgorithm> This class re-calculates all the personal best positions in the population.
class	DualReactionStrategy<E extends PopulationBasedAlgorithm> This reaction strategy wraps both a ReinitializationReactionStrategy and a ReevaluationReactionStrategy.
class	EnvironmentChangeResponseStrategy<E extends PopulationBasedAlgorithm> TODO: Complete this Javadoc.
class	NeighbourhoodBestSentriesReactionStrategy<E extends PopulationBasedAlgorithm>
class	PartialReinitialisationResponseStrategy<E extends PopulationBasedAlgorithm>
class	ParticleReevaluationResponseStrategy<E extends PopulationBasedAlgorithm> Deprecated. Rather use ReevaluationReactionStrategy
class	ReevaluationReactionStrategy<E extends PopulationBasedAlgorithm> This reaction strategy reevaluates the specified ratio of randomly chosen entities in the given Topology.
class	ReinitializationReactionStrategy<E extends PopulationBasedAlgorithm> This reaction strategy reinitializes the specified ratio of randomly chosen entities in the given Topology.

Uses of Cloneable in net.sourceforge.cilib.pso.iterationstrategies

Classes in net.sourceforge.cilib.pso.iterationstrategies that implement Cloneable

class	ASynchronousIterationStrategy Implementation of the asynchrounous iteration strategy for PSO.
class	SynchronousIterationStrategy Implementation of the synchronous iteration strategy for PSO.

Uses of Cloneable in net.sourceforge.cilib.pso.moo.guideselectionstrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.moo.guideselectionstrategies

interface

GuideSelectionStrategy With Multi-objective PSOs the pBest and lBest (or gBest) particles are replaced with the concept of local and global guides respectively.

Classes in net.sourceforge.cilib.pso.moo.guideselectionstrategies that implement Cloneable

class	DNGuideSelectionStrategy Dynamic Neighbourhood Guide Selection Strategy Placeholder class for anybody interested in implementing this Multi-objective PSO.
class	NBestGuideSelectionStrategy A concrete implementation of GuideSelectionStrategy where the neighbourhood best position of a particle gets selected as a guide (usually global guide).
class	PBestGuideSelectionStrategy A concrete implementation of GuideSelectionStrategy where the personal best position of a particle gets selected as a guide (usually local guide).
class	VEPSOGuideSelectionStrategy Vector-Evaluated Particle Swarm Optimisation Guide Selection Strategy

Uses of Cloneable in net.sourceforge.cilib.pso.moo.guideupdatestrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.moo.guideupdatestrategies

interface

GuideUpdateStrategy This class is used in combination with GuideSelectionStrategy to determine when and if a particle's guides get updated.

Classes in net.sourceforge.cilib.pso.moo.guideupdatestrategies that implement Cloneable

class	DominantGuideUpdateStrategy Implementation of GuideUpdateStrategy where a particle's guide gets updated if and only if the new guide dominates the previous guide.
class	StandardGuideUpdateStrategy This the standard GuideUpdateStrategy in that it always updates the given particle's guide.

Uses of Cloneable in net.sourceforge.cilib.pso.niching

Classes in net.sourceforge.cilib.pso.niching that implement Cloneable

class

Niche

Uses of Cloneable in net.sourceforge.cilib.pso.particle

Classes in net.sourceforge.cilib.pso.particle that implement Cloneable

class	AbstractParticle This class defines the common behaviour available for all Particle instances.
class	CoherenceParticle
class	DeviationDecorator
class	LFDecorator LFDecorator.
class	MultiObjectiveParticle TODO: Complete this javadoc.
class	ParticleDecorator
class	StandardParticle

Uses of Cloneable in net.sourceforge.cilib.pso.particle.initialisation

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.particle.initialisation

interface	PositionInitialisationStrategy TODO: Complete this javadoc.
interface	VelocityInitialisationStrategy Interface defining the valid tasks available for velocity intialisation.

Classes in net.sourceforge.cilib.pso.particle.initialisation that implement Cloneable

class	DataSetBasedPositionInitialisationStrategy This strategy initializes the position as well as the best position of a Particle using the DataSetBasedCentroidsInitialisationStrategy.
class	DomainPercentageVelocityInitialisationStrategy TODO: this class should be refactored to use the RandomInitialVelocityStrategy or to be a compound operation where the velocity is first randomised and then scaled by a percentage.
class	RandomBoundedInitialVelocityStrategy
class	RandomInitialVelocityStrategy
class	RandomizedPositionInitialisationStrategy Deprecated. This class is a temporary measure until we can get the DomainParser working as intended. the idea is to be able to specify particle contents via the string and have the randomness applied on initialisation. A specific example is to use this new string when initialising positions with Polar coordinates for example
class	ZeroInitialVelocityStrategy

Uses of Cloneable in net.sourceforge.cilib.pso.positionupdatestrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.positionupdatestrategies

interface	NeighbourhoodBestUpdateStrategy Interface specifying the manner in which the neighbourhood best of the Entity is obtained.
interface	PersonalBestUpdateStrategy Update the personal best of the particle.
interface	PositionUpdateStrategy TODO: Complete this javadoc.

Classes in net.sourceforge.cilib.pso.positionupdatestrategies that implement Cloneable

class	BareBonesPositionUpdateStrategy Deprecated. Refer to the replacing class.
class	BinaryPositionUpdateStrategy Binary position update strategy to enable the BinaryPSO.
class	BoundedPersonalBestUpdateStrategy Update the personal best of the particle, if it is a valid update.
class	DEPositionUpdateStrategy Implementation of the DE PSO of Hendtlass.
class	GaussianPositionUpdateStrategy TODO: Complete this javadoc.
class	IterationNeighbourhoodBestUpdateStrategy
class	LinearPositionUpdateStrategy This sets the position to the velocity.
class	MemoryNeighbourhoodBestUpdateStrategy This class.....
class	StandardPersonalBestUpdateStrategy Update the personal best of the particle, based on the standard PSO definition of the process.
class	StandardPositionUpdateStrategy This is the normal position update as described by Kennedy and Eberhart.

Uses of Cloneable in net.sourceforge.cilib.pso.velocityupdatestrategies

Subinterfaces of Cloneable in net.sourceforge.cilib.pso.velocityupdatestrategies

interface

VelocityUpdateStrategy

Classes in net.sourceforge.cilib.pso.velocityupdatestrategies that implement Cloneable

class	BareBonesDEVelocityUpdate The VelocityUpdateStrategy strategy which uses a DE strategy where the trial vector is the bare bones attractor point.
class	BareBonesExploitVelocityUpdateStrategy The VelocityUpdateStrategy strategy for the Bare Bones PSO as adapted by Kennedy.
class	BareBonesVelocityUpdateStrategy The VelocityUpdateStrategy strategy for the Bare Bones PSO as defined by Kennedy.
class	CoherenceVelocityUpdate Velocity update for the Coherence PSO.
class	ConstrictionVelocityUpdate A velocity update strategy that utilizes the constriction coefficient as developed by Clerc.
class	FDRVelocityUpdateStrategy Implementation of the FDR-PSO velocity update equation.
class	FIPSVelocityUpdate
class	GCVelocityUpdateStrategy An implementation of the Guaranteed Convergence PSO algorithm.
class	LFVelocityUpdate
class	LinearVelocityUpdate TODO: test this.
class	MOVelocityUpdateStrategy With Multi-objective PSOs the pBest and lBest (or gBest) particles are replaced with the concept of local and global guides respectively.
class	StandardVelocityUpdate Implementation of the standard / default velocity update equation.

Uses of Cloneable in net.sourceforge.cilib.simulator

Classes in net.sourceforge.cilib.simulator that implement Cloneable

class

Simulation This class represents a single simulation experiment.

Uses of Cloneable in net.sourceforge.cilib.stoppingcondition

Subinterfaces of Cloneable in net.sourceforge.cilib.stoppingcondition

interface

StoppingCondition A class that implements this interface can be used to measure the progress of an algorithm.

Classes in net.sourceforge.cilib.stoppingcondition that implement Cloneable

class	MaximumFitnessEvaluations
class	MaximumIterations
class	MaximumRestarts The maximum number of allowed restarts.
class	MinimumDiversity A stopping condition that is based on the Diversity of the population.
class	MinimumFunctionMinimisationError
class	MinimumSwarmDiameter
class	OptimiserStalled used to check if optimisation algorithm has stalled.
class	SingleIteration

Uses of Cloneable in net.sourceforge.cilib.type

Subinterfaces of Cloneable in net.sourceforge.cilib.type

interface

DomainRegistry

Classes in net.sourceforge.cilib.type that implement Cloneable

class

StringBasedDomainRegistry Class to perform the needed mappings between a top level domain string and the built representation.

Uses of Cloneable in net.sourceforge.cilib.type.types

Subinterfaces of Cloneable in net.sourceforge.cilib.type.types

interface

Type Type interface for all type-objects that are used within CIlib.

Classes in net.sourceforge.cilib.type.types that implement Cloneable

class	Bit Implemetantation of the Bit object.
class	Blackboard<K,V extends Type> Simple Blackboard implementation.
class	Int
class	Long
class	Numeric Definition of the Numeric type.
class	Real
class	StringType

Uses of Cloneable in net.sourceforge.cilib.type.types.container

Classes in net.sourceforge.cilib.type.types.container with type parameters of type Cloneable

class	AbstractTree<E extends Cloneable & Comparable<? super E>> Base class for all Tree objects.
class	BinaryTree<E extends Comparable<? super E> & Cloneable> Implementation of a BinaryTree.
class	GeneralTree<E extends Comparable<? super E> & Cloneable> Implementation of the General Tree data structure.
class	NaryTree<E extends Comparable<? super E> & Cloneable> Implementation of a Nary Tree data structure.
interface	Tree<E extends Cloneable> Definition of the Tree type.

Subinterfaces of Cloneable in net.sourceforge.cilib.type.types.container

interface	Graph<E> Definition of Graph operations.
interface	StructuredType<E> Description for all objects that maintain a structure or collection of objects.
interface	Tree<E extends Cloneable> Definition of the Tree type.

Classes in net.sourceforge.cilib.type.types.container that implement Cloneable

class	AbstractList<E extends Type> The basic definition for all Type objects that are based on a list.
class	AbstractTree<E extends Cloneable & Comparable<? super E>> Base class for all Tree objects.
class	BinaryTree<E extends Comparable<? super E> & Cloneable> Implementation of a BinaryTree.
class	GeneralTree<E extends Comparable<? super E> & Cloneable> Implementation of the General Tree data structure.
class	NaryTree<E extends Comparable<? super E> & Cloneable> Implementation of a Nary Tree data structure.
class	Set<E> TODO: Fix the copy constructor.
class	StandardGraph<E extends Comparable<E>> TODO: Complete this javadoc.
class	TypeList General list container for all Type instances.
class	Vector

Fields in net.sourceforge.cilib.type.types.container declared as Cloneable

protected E

AbstractTree.key

Uses of Cloneable in net.sourceforge.cilib.util.calculator

Subinterfaces of Cloneable in net.sourceforge.cilib.util.calculator

interface

FitnessCalculator<T> Perform the calculation of the fitness for the given Entity, decoupling the Entity from the Problem.

Classes in net.sourceforge.cilib.util.calculator that implement Cloneable

class	EntityBasedFitnessCalculator A fitness calculator tht is specialised to determine the fitness of an Entity instance.
class	PropertyBasedFitnessCalculator
class	StructuredTypeFitnessCalculator<T extends StructuredType<?>> A fitness calculator that determines the fitness value of a StructuredType.

Uses of Cloneable in net.sourceforge.cilib.util.selection.recipes

Subinterfaces of Cloneable in net.sourceforge.cilib.util.selection.recipes

interface

SelectionRecipe<E> A recipe is a series of steps that need to be followed to achieve a selection.

Classes in net.sourceforge.cilib.util.selection.recipes that implement Cloneable

class	ElitistSelection<E extends Comparable> A recipe for Elitist selection.
class	RandomSelection<E> Perform a random selection from the provided list of elements.
class	RankBasedSelection<E extends Comparable> A recipe for Rank based selection.
class	RingBasedPopulationSelection
class	RouletteWheelSelection<E extends Comparable> A recipe for Roulette wheel selection.
class	TournamentSelection<E extends Comparable> A recipe for Tournament selection.

Uses of Cloneable in net.sourceforge.cilib.util.selection.weighing

Subinterfaces of Cloneable in net.sourceforge.cilib.util.selection.weighing

interface

Weighing<E> Interface defining how weighing for selections are to operate.

Classes in net.sourceforge.cilib.util.selection.weighing that implement Cloneable

class	FixedWeighing<E> Apply a fixed weighing to a list of elements.
class	LinearWeighing<E> Apply a weighting to the provided list of elements.

Uses of Cloneable in net.sourceforge.cilib.util.selection.weighing.entity

Classes in net.sourceforge.cilib.util.selection.weighing.entity that implement Cloneable

class

EntityWeighing<E extends Entity> Apply a weighing based on the Fitness of Entity instances.